Wall clock time and date at job start Tue Mar 31 2020 08:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46913 * 2 1 4 4 C 1.46509 * 119.99856 * 272.63676 * 3 2 1 5 5 C 1.52995 * 109.46984 * 270.00365 * 4 3 2 6 6 H 1.08997 * 109.47840 * 59.99867 * 5 4 3 7 7 C 1.53003 * 109.46743 * 180.02562 * 5 4 3 8 8 O 1.42901 * 109.47011 * 299.99423 * 5 4 3 9 9 C 1.42909 * 113.99875 * 150.00169 * 8 5 4 10 10 C 1.34768 * 120.00403 * 92.63823 * 3 2 1 11 11 O 1.21283 * 120.00319 * 185.51866 * 10 3 2 12 12 C 1.50703 * 119.99646 * 5.51988 * 10 3 2 13 13 H 1.08994 * 109.47549 * 37.06686 * 12 10 3 14 14 C 1.50698 * 109.46812 * 277.06421 * 12 10 3 15 15 H 1.07995 * 120.00423 * 333.40516 * 14 12 10 16 16 C 1.37878 * 119.99703 * 153.39862 * 14 12 10 17 17 N 1.31518 * 120.00035 * 6.26753 * 16 14 12 18 18 Si 1.86804 * 120.00070 * 186.26758 * 16 14 12 19 19 H 1.48507 * 109.47124 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47014 * 299.99850 * 18 16 14 21 21 H 1.48493 * 109.47311 * 60.00271 * 18 16 14 22 22 C 1.50706 * 109.47240 * 157.07095 * 12 10 3 23 23 C 1.38235 * 120.00010 * 66.06366 * 22 12 10 24 24 C 1.38230 * 119.99719 * 179.79004 * 23 22 12 25 25 C 1.38233 * 120.00399 * 0.44581 * 24 23 22 26 26 C 1.38230 * 119.99720 * 359.80967 * 25 24 23 27 27 C 1.38237 * 120.00396 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46894 * 305.28964 * 1 2 3 29 29 H 1.08998 * 109.46840 * 65.29436 * 1 2 3 30 30 H 1.09002 * 109.46533 * 185.29292 * 1 2 3 31 31 H 1.08997 * 109.47364 * 239.99734 * 2 1 3 32 32 H 1.08996 * 109.47533 * 119.99856 * 2 1 3 33 33 H 1.08999 * 109.46820 * 30.00242 * 4 3 2 34 34 H 1.08997 * 109.46941 * 149.99682 * 4 3 2 35 35 H 1.08994 * 109.47186 * 299.99432 * 7 5 4 36 36 H 1.08998 * 109.47451 * 59.99794 * 7 5 4 37 37 H 1.09002 * 109.46662 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47013 * 180.02562 * 9 8 5 39 39 H 1.08995 * 109.46813 * 300.00634 * 9 8 5 40 40 H 1.09004 * 109.46806 * 60.00495 * 9 8 5 41 41 H 0.96995 * 120.00046 * 355.06577 * 17 16 14 42 42 H 1.08006 * 120.00099 * 0.02562 * 23 22 12 43 43 H 1.08005 * 120.00163 * 180.28128 * 24 23 22 44 44 H 1.07999 * 120.00270 * 179.83097 * 25 24 23 45 45 H 1.08002 * 120.00063 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.00742 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2074 2.0914 -1.2675 5 6 3.6318 1.8582 -1.7751 6 1 3.7927 0.7912 -1.9289 7 6 3.8294 2.6003 -3.0984 8 8 4.5668 2.3468 -0.8113 9 6 5.8094 1.6411 -0.7972 10 6 2.2936 1.9988 1.1658 11 8 2.6014 3.1719 1.1729 12 6 2.2189 1.2315 2.4608 13 1 2.5806 0.2156 2.3026 14 6 0.7898 1.1875 2.9369 15 1 0.1015 1.9696 2.6524 16 6 0.3609 0.1486 3.7355 17 7 1.2246 -0.7365 4.1832 18 14 -1.4468 -0.0019 4.1815 19 1 -1.6466 -1.1952 5.0426 20 1 -1.8790 1.2155 4.9138 21 1 -2.2521 -0.1461 2.9422 22 6 3.0732 1.9131 3.4985 23 6 2.7300 3.1705 3.9590 24 6 3.5112 3.7937 4.9140 25 6 4.6407 3.1636 5.4018 26 6 4.9868 1.9084 4.9375 27 6 4.2032 1.2832 3.9857 28 1 -0.3633 0.5937 0.8388 29 1 -0.3633 0.4295 -0.9336 30 1 -0.3632 -1.0233 0.0948 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.4941 1.7187 -2.0026 34 1 2.0465 3.1584 -1.1137 35 1 3.1162 2.2280 -3.8337 36 1 3.6687 3.6673 -2.9442 37 1 4.8443 2.4345 -3.4598 38 1 6.4634 2.0720 -0.0392 39 1 5.6284 0.5914 -0.5664 40 1 6.2840 1.7216 -1.7753 41 1 2.1498 -0.7004 3.8944 42 1 1.8494 3.6643 3.5753 43 1 3.2406 4.7743 5.2771 44 1 5.2526 3.6517 6.1460 45 1 5.8695 1.4162 5.3183 46 1 4.4737 0.3027 3.6226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361690714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:18 Heat of formation + Delta-G solvation = -79.705891 kcal Electronic energy + Delta-G solvation = -26874.481141 eV Core-core repulsion = 23342.331255 eV Total energy + Delta-G solvation = -3532.149886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18459 -39.74549 -38.83457 -36.71144 -35.81069 -33.34428 -32.54652 -31.62562 -30.97518 -29.25341 -27.68650 -26.94749 -25.33974 -24.19201 -23.24792 -22.78020 -21.96072 -20.08430 -18.86759 -18.05168 -17.67192 -17.37047 -17.11473 -16.45738 -15.94860 -15.88373 -15.64124 -15.50486 -15.21140 -14.70942 -14.56847 -14.13665 -14.05344 -13.96091 -13.78507 -13.53371 -13.36455 -13.19456 -13.12746 -12.96722 -12.88016 -12.61379 -12.39449 -12.27281 -12.05961 -11.89168 -11.81687 -11.68690 -11.64063 -10.85018 -10.64989 -10.52895 -10.32604 -9.63283 -9.45236 -9.29114 -8.57209 -6.28630 0.66172 0.73091 1.54899 1.59506 1.79383 2.03972 2.27723 2.58955 2.90470 3.10972 3.24941 3.91864 4.00680 4.07676 4.12648 4.20297 4.22499 4.26005 4.34798 4.38072 4.41149 4.47717 4.52297 4.56058 4.60459 4.73246 4.73867 4.79029 4.84614 4.88462 4.92889 4.97242 4.99856 5.14336 5.26626 5.28341 5.35901 5.57626 5.69774 5.74333 5.81038 5.88324 6.10090 6.18937 6.32697 6.36705 6.54630 6.70716 7.44532 7.57293 8.81701 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.007084 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.978935 B = 3951.506234 C = 5699.339424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 N -0.611 5.611 4 C 0.114 3.886 5 C 0.066 3.934 6 H 0.071 0.929 7 C -0.162 4.162 8 O -0.402 6.402 9 C 0.032 3.968 10 C 0.538 3.462 11 O -0.579 6.579 12 C 0.052 3.948 13 H 0.046 0.954 14 C -0.571 4.571 15 H 0.034 0.966 16 C -0.001 4.001 17 N -0.918 5.918 18 Si 1.096 2.904 19 H -0.283 1.283 20 H -0.285 1.285 21 H -0.261 1.261 22 C -0.052 4.052 23 C -0.100 4.100 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.128 4.128 27 C -0.147 4.147 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.060 0.940 41 H 0.263 0.737 42 H 0.089 0.911 43 H 0.133 0.867 44 H 0.149 0.851 45 H 0.143 0.857 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 0.290 -11.141 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.343 5.343 4 C -0.008 4.008 5 C 0.007 3.993 6 H 0.089 0.911 7 C -0.220 4.220 8 O -0.321 6.321 9 C -0.065 4.065 10 C 0.329 3.671 11 O -0.459 6.459 12 C 0.031 3.969 13 H 0.063 0.937 14 C -0.608 4.608 15 H 0.052 0.948 16 C -0.202 4.202 17 N -0.554 5.554 18 Si 0.919 3.081 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.053 4.053 23 C -0.118 4.118 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.146 4.146 27 C -0.165 4.165 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.151 0.849 44 H 0.166 0.834 45 H 0.161 0.839 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.074 0.154 -10.149 10.937 hybrid contribution 1.070 0.685 -0.785 1.494 sum 5.144 0.839 -10.934 12.113 Atomic orbital electron populations 1.22148 0.95493 1.02514 1.02098 1.21502 0.95192 0.81371 1.02486 1.47837 1.66208 1.14932 1.05330 1.21697 0.95655 0.97900 0.85583 1.22733 0.89287 0.98130 0.89136 0.91138 1.22156 1.03264 1.00839 0.95726 1.88106 1.26116 1.58476 1.59422 1.22803 0.85868 0.95940 1.01870 1.20956 0.73363 0.86863 0.85943 1.90531 1.49719 1.18066 1.87581 1.18032 0.96435 0.94086 0.88361 0.93667 1.21376 0.92794 1.10579 1.36094 0.94775 1.26751 1.08385 0.92306 0.92806 1.70876 1.05265 1.38449 1.40828 0.83205 0.71187 0.76292 0.77410 1.20837 1.21159 1.18597 1.20302 0.93436 0.94265 0.97315 1.20815 0.98938 0.95224 0.96858 1.21349 0.96141 1.00581 0.97538 1.21284 0.97518 0.95655 1.01326 1.21294 1.00105 0.95902 0.97263 1.21123 0.95645 0.99886 0.99873 0.93318 0.91631 0.91210 0.88545 0.92384 0.86482 0.92243 0.89057 0.92922 0.91466 0.90667 0.94393 0.92106 0.92558 0.89271 0.84884 0.83352 0.83943 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 10.13 71.98 0.73 -4.57 16 2 C 0.12 3.87 5.85 86.38 0.50 4.37 16 3 N -0.61 -23.04 2.43 -821.81 -1.99 -25.03 16 4 C 0.11 3.49 5.22 86.38 0.45 3.95 16 5 C 0.07 1.77 2.99 30.59 0.09 1.86 16 6 H 0.07 1.66 7.79 -2.39 -0.02 1.64 16 7 C -0.16 -3.23 9.53 71.98 0.69 -2.54 16 8 O -0.40 -13.97 9.20 -147.75 -1.36 -15.33 16 9 C 0.03 0.85 10.82 113.37 1.23 2.08 16 10 C 0.54 25.53 6.19 87.66 0.54 26.07 16 11 O -0.58 -30.77 14.16 -1.81 -0.03 -30.79 16 12 C 0.05 2.61 1.16 -13.03 -0.02 2.59 16 13 H 0.05 2.33 4.82 -2.39 -0.01 2.32 16 14 C -0.57 -30.22 5.48 25.60 0.14 -30.08 16 15 H 0.03 1.91 7.80 -2.91 -0.02 1.89 16 16 C 0.00 -0.04 5.45 84.65 0.46 0.42 16 17 N -0.92 -51.57 13.63 21.45 0.29 -51.27 16 18 Si 1.10 48.01 29.91 68.60 2.05 50.06 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 22 C -0.05 -2.60 4.43 -19.86 -0.09 -2.69 16 23 C -0.10 -4.92 8.01 22.27 0.18 -4.74 16 24 C -0.14 -5.64 10.05 22.27 0.22 -5.42 16 25 C -0.14 -5.05 10.05 22.27 0.22 -4.83 16 26 C -0.13 -4.83 10.05 22.27 0.22 -4.61 16 27 C -0.15 -6.59 9.48 22.27 0.21 -6.38 16 28 H 0.05 1.96 6.23 -2.39 -0.01 1.94 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.10 2.38 8.09 -2.39 -0.02 2.36 16 32 H 0.06 2.28 5.77 -2.39 -0.01 2.26 16 33 H 0.12 2.63 8.07 -2.39 -0.02 2.61 16 34 H 0.06 2.15 7.35 -2.39 -0.02 2.14 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 0.98 8.08 -2.39 -0.02 0.96 16 40 H 0.06 1.26 7.87 -2.38 -0.02 1.24 16 41 H 0.26 14.87 6.46 -92.71 -0.60 14.27 16 42 H 0.09 4.72 7.68 -2.91 -0.02 4.70 16 43 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 46 H 0.11 4.63 7.96 -2.91 -0.02 4.60 16 Total: -1.00 -70.55 372.23 5.87 -64.68 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 1.11 Total: 32.20 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 5.79 Total: -24.52 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -1.70 Total: -76.30 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -1.38 Total: -46.12 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.05 Total: 50.06 kcal Total: -70.55 5.87 -64.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361690714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.025 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds