Wall clock time and date at job start Tue Mar 31 2020 09:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46865 * 2 1 4 4 C 1.42903 * 113.99472 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47127 * 60.00401 * 4 3 2 6 6 C 1.53001 * 109.47364 * 299.99909 * 4 3 2 7 7 C 1.53000 * 109.46877 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.46980 * 65.00251 * 7 4 3 9 9 C 1.34779 * 120.00328 * 180.02562 * 8 7 4 10 10 O 1.21283 * 119.99419 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00080 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47295 * 299.99387 * 11 9 8 13 13 C 1.50696 * 109.47530 * 59.99483 * 11 9 8 14 14 H 1.07997 * 120.00260 * 235.33651 * 13 11 9 15 15 C 1.37879 * 119.99977 * 55.33425 * 13 11 9 16 16 N 1.31516 * 119.99735 * 1.97120 * 15 13 11 17 17 Si 1.86800 * 120.00111 * 181.96775 * 15 13 11 18 18 H 1.48495 * 109.47133 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46977 * 120.00228 * 17 15 13 20 20 H 1.48496 * 109.47065 * 239.99944 * 17 15 13 21 21 C 1.50707 * 109.46942 * 179.97438 * 11 9 8 22 22 C 1.38224 * 120.00104 * 47.22099 * 21 11 9 23 23 C 1.38237 * 120.00255 * 180.02562 * 22 21 11 24 24 C 1.38238 * 119.99745 * 359.95072 * 23 22 21 25 25 C 1.38236 * 119.99912 * 0.02562 * 24 23 22 26 26 C 1.38232 * 119.99717 * 227.19961 * 21 11 9 27 27 H 1.09006 * 109.47197 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47330 * 299.99961 * 1 2 3 29 29 H 1.09004 * 109.46838 * 60.00206 * 1 2 3 30 30 H 1.09000 * 109.46847 * 239.99958 * 2 1 3 31 31 H 1.08996 * 109.46932 * 120.00132 * 2 1 3 32 32 H 1.09003 * 109.46993 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.46848 * 299.99595 * 5 4 3 34 34 H 1.08997 * 109.47084 * 59.99636 * 5 4 3 35 35 H 1.08994 * 109.46955 * 300.00148 * 6 4 3 36 36 H 1.08997 * 109.46915 * 59.99981 * 6 4 3 37 37 H 1.09003 * 109.47151 * 180.02562 * 6 4 3 38 38 H 1.09000 * 109.47119 * 305.00549 * 7 4 3 39 39 H 1.09001 * 109.47533 * 184.99856 * 7 4 3 40 40 H 0.97004 * 120.00070 * 359.97438 * 8 7 4 41 41 H 0.97003 * 120.00319 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.00315 * 359.97438 * 22 21 11 43 43 H 1.07994 * 120.00683 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00281 * 179.72897 * 24 23 22 45 45 H 1.07996 * 120.00326 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.00068 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9967 0.7812 -1.2484 6 6 3.9957 0.7815 1.2502 7 6 3.8254 2.9383 -0.0001 8 7 3.3868 3.5614 1.2512 9 6 3.6273 4.8687 1.4736 10 8 4.2073 5.5293 0.6380 11 6 3.1766 5.5094 2.7610 12 1 2.0938 5.4220 2.8508 13 6 3.8349 4.8149 3.9251 14 1 3.2306 4.3996 4.7181 15 6 5.2086 4.7097 3.9780 16 7 5.9463 5.2491 3.0322 17 14 6.0220 3.8010 5.3929 18 1 4.9788 3.2898 6.3179 19 1 6.8122 2.6618 4.8606 20 1 6.9218 4.7283 6.1247 21 6 3.5651 6.9656 2.7603 22 6 3.3058 7.7495 1.6518 23 6 3.6626 9.0850 1.6509 24 6 4.2778 9.6368 2.7591 25 6 4.5366 8.8529 3.8679 26 6 4.1803 7.5172 3.8684 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.0833 0.8676 -1.2481 33 1 3.7156 -0.2720 -1.2483 34 1 3.5943 1.2646 -2.1385 35 1 3.5926 1.2652 2.1398 36 1 3.7146 -0.2716 1.2502 37 1 5.0823 0.8680 1.2508 38 1 3.3499 3.4409 -0.8424 39 1 4.9082 3.0254 -0.0892 40 1 2.9226 3.0331 1.9194 41 1 6.9128 5.1754 3.0694 42 1 2.8252 7.3185 0.7859 43 1 3.4605 9.6975 0.7847 44 1 4.5606 10.6791 2.7569 45 1 5.0176 9.2838 4.7335 46 1 4.3822 6.9049 4.7348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435906743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:51 Heat of formation + Delta-G solvation = -66.062676 kcal Electronic energy + Delta-G solvation = -26171.139568 eV Core-core repulsion = 22639.581296 eV Total energy + Delta-G solvation = -3531.558272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.38265 -38.59477 -37.20540 -34.41418 -33.54107 -31.93321 -30.75610 -30.54126 -29.61025 -27.55272 -27.36122 -25.65663 -23.72962 -22.65910 -21.20713 -20.48648 -19.84745 -19.06436 -16.87042 -16.55676 -15.90185 -15.60140 -15.19614 -15.10295 -14.75417 -14.36490 -13.87646 -13.79537 -13.55115 -13.28043 -13.04369 -12.75706 -12.42124 -12.32652 -12.23610 -12.10783 -12.00436 -11.90367 -11.68533 -11.47589 -11.30707 -11.21255 -10.99942 -10.94826 -10.70634 -10.40567 -10.31135 -9.99504 -9.60667 -9.42908 -9.30145 -8.67388 -8.22058 -7.85187 -7.62493 -7.33136 -6.09458 -4.25243 2.61262 2.67705 3.19368 3.30162 3.31557 3.71659 4.21750 4.30893 4.48726 4.83260 4.96690 5.07210 5.09045 5.16692 5.20501 5.23830 5.33807 5.46774 5.57743 5.72295 5.83007 5.90508 5.91070 5.98640 6.03726 6.04983 6.10984 6.12348 6.19925 6.29388 6.38820 6.48349 6.68199 6.74589 6.88172 6.99053 7.20078 7.28035 7.36465 7.60314 7.65743 7.71152 7.73488 7.86242 8.23213 8.33866 8.69276 8.90836 9.40673 9.80781 10.90881 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.004863 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.892259 B = 5756.463073 C = 6795.085740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.370 6.370 4 C 0.103 3.897 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.146 3.854 8 N -0.729 5.729 9 C 0.551 3.449 10 O -0.551 6.551 11 C 0.055 3.945 12 H 0.056 0.944 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.075 3.925 16 N -0.841 5.841 17 Si 0.883 3.117 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.282 1.282 21 C -0.012 4.012 22 C -0.100 4.100 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.065 4.065 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.398 0.602 41 H 0.263 0.737 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -8.347 -4.221 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.290 6.290 4 C 0.064 3.936 5 C -0.232 4.232 6 C -0.235 4.235 7 C 0.021 3.979 8 N -0.383 5.383 9 C 0.340 3.660 10 O -0.428 6.428 11 C 0.034 3.966 12 H 0.074 0.926 13 C -0.575 4.575 14 H 0.084 0.916 15 C -0.133 4.133 16 N -0.474 5.474 17 Si 0.711 3.289 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.013 4.013 22 C -0.118 4.118 23 C -0.163 4.163 24 C -0.164 4.164 25 C -0.167 4.167 26 C -0.083 4.083 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.232 0.768 41 H 0.073 0.927 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.638 -7.662 -4.910 10.705 hybrid contribution 0.940 -1.102 0.953 1.733 sum -4.698 -8.764 -3.958 10.702 Atomic orbital electron populations 1.21730 0.94080 1.01756 1.03172 1.22463 0.95167 0.85003 0.99951 1.88040 1.20398 1.25605 1.94982 1.21750 0.81028 0.96254 0.94585 1.22349 1.02028 1.00655 0.98201 1.22398 1.02278 1.00106 0.98698 1.21014 0.99344 0.88631 0.88943 1.45728 1.62172 1.11314 1.19075 1.20947 0.76855 0.80592 0.87612 1.90529 1.41601 1.63031 1.47681 1.17887 0.96176 0.89916 0.92619 0.92598 1.20731 0.91428 1.39125 1.06261 0.91555 1.25043 0.97572 0.94855 0.95839 1.70096 1.05530 1.40402 1.31349 0.86663 0.79742 0.79839 0.82699 1.19521 1.21026 1.20836 1.19816 0.94376 0.94853 0.92291 1.20978 1.00230 0.92966 0.97620 1.20816 1.02211 0.95637 0.97622 1.20761 1.02336 0.98522 0.94766 1.20981 1.02689 0.95121 0.97884 1.21138 0.94868 0.92954 0.99360 0.91575 0.91730 0.92063 0.93566 0.93239 0.91238 0.92163 0.91616 0.90765 0.92623 0.91271 0.92177 0.91134 0.76771 0.92665 0.87494 0.88158 0.88281 0.88119 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.05 0.56 5.86 37.16 0.22 0.78 16 3 O -0.37 -5.31 9.93 -35.23 -0.35 -5.66 16 4 C 0.10 1.46 0.80 -90.62 -0.07 1.38 16 5 C -0.17 -2.02 8.25 37.16 0.31 -1.71 16 6 C -0.18 -2.43 8.02 37.16 0.30 -2.13 16 7 C 0.15 2.60 4.84 -4.04 -0.02 2.58 16 8 N -0.73 -14.86 5.09 -60.29 -0.31 -15.17 16 9 C 0.55 13.27 5.45 -10.99 -0.06 13.21 16 10 O -0.55 -14.94 13.95 5.55 0.08 -14.86 16 11 C 0.06 1.32 2.78 -94.08 -0.26 1.06 16 12 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 13 C -0.54 -13.18 7.12 -34.44 -0.25 -13.43 16 14 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.07 1.88 3.99 -17.82 -0.07 1.81 16 16 N -0.84 -22.95 10.88 55.43 0.60 -22.35 16 17 Si 0.88 19.76 29.54 -169.99 -5.02 14.74 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.01 -0.30 4.52 -104.63 -0.47 -0.77 16 22 C -0.10 -2.32 8.21 -39.59 -0.33 -2.65 16 23 C -0.14 -3.05 10.05 -39.58 -0.40 -3.45 16 24 C -0.15 -2.96 10.05 -39.58 -0.40 -3.35 16 25 C -0.15 -3.18 10.05 -39.58 -0.40 -3.58 16 26 C -0.07 -1.55 8.20 -39.58 -0.32 -1.88 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.46 6.42 -51.93 -0.33 0.12 16 31 H 0.05 0.52 6.41 -51.93 -0.33 0.18 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.13 6.58 -51.93 -0.34 0.78 16 36 H 0.05 0.64 6.54 -51.93 -0.34 0.30 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.40 7.64 6.88 -40.82 -0.28 7.36 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.11 2.48 7.01 -52.49 -0.37 2.11 16 43 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 46 H 0.13 3.11 6.02 -52.49 -0.32 2.79 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -29.77 365.17 -8.61 -38.38 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -7.27 Total: 12.58 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.84 Total: -13.17 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.30 Total: -37.52 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.27 Total: -20.51 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.77 -8.61 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435906743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.683 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds