Wall clock time and date at job start Tue Mar 31 2020 09:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46865 * 2 1 4 4 C 1.42903 * 113.99472 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47127 * 60.00401 * 4 3 2 6 6 C 1.53001 * 109.47364 * 299.99909 * 4 3 2 7 7 C 1.53000 * 109.46877 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.46980 * 65.00251 * 7 4 3 9 9 C 1.34779 * 120.00328 * 180.02562 * 8 7 4 10 10 O 1.21283 * 119.99419 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00080 * 180.02562 * 9 8 7 12 12 H 1.09001 * 109.47295 * 299.99387 * 11 9 8 13 13 C 1.50696 * 109.47530 * 59.99483 * 11 9 8 14 14 H 1.07997 * 120.00260 * 235.33651 * 13 11 9 15 15 C 1.37879 * 119.99977 * 55.33425 * 13 11 9 16 16 N 1.31516 * 119.99735 * 1.97120 * 15 13 11 17 17 Si 1.86800 * 120.00111 * 181.96775 * 15 13 11 18 18 H 1.48495 * 109.47133 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46977 * 120.00228 * 17 15 13 20 20 H 1.48496 * 109.47065 * 239.99944 * 17 15 13 21 21 C 1.50707 * 109.46942 * 179.97438 * 11 9 8 22 22 C 1.38224 * 120.00104 * 47.22099 * 21 11 9 23 23 C 1.38237 * 120.00255 * 180.02562 * 22 21 11 24 24 C 1.38238 * 119.99745 * 359.95072 * 23 22 21 25 25 C 1.38236 * 119.99912 * 0.02562 * 24 23 22 26 26 C 1.38232 * 119.99717 * 227.19961 * 21 11 9 27 27 H 1.09006 * 109.47197 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47330 * 299.99961 * 1 2 3 29 29 H 1.09004 * 109.46838 * 60.00206 * 1 2 3 30 30 H 1.09000 * 109.46847 * 239.99958 * 2 1 3 31 31 H 1.08996 * 109.46932 * 120.00132 * 2 1 3 32 32 H 1.09003 * 109.46993 * 179.97438 * 5 4 3 33 33 H 1.09006 * 109.46848 * 299.99595 * 5 4 3 34 34 H 1.08997 * 109.47084 * 59.99636 * 5 4 3 35 35 H 1.08994 * 109.46955 * 300.00148 * 6 4 3 36 36 H 1.08997 * 109.46915 * 59.99981 * 6 4 3 37 37 H 1.09003 * 109.47151 * 180.02562 * 6 4 3 38 38 H 1.09000 * 109.47119 * 305.00549 * 7 4 3 39 39 H 1.09001 * 109.47533 * 184.99856 * 7 4 3 40 40 H 0.97004 * 120.00070 * 359.97438 * 8 7 4 41 41 H 0.97003 * 120.00319 * 179.97438 * 16 15 13 42 42 H 1.08000 * 120.00315 * 359.97438 * 22 21 11 43 43 H 1.07994 * 120.00683 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.00281 * 179.72897 * 24 23 22 45 45 H 1.07996 * 120.00326 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.00068 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9967 0.7812 -1.2484 6 6 3.9957 0.7815 1.2502 7 6 3.8254 2.9383 -0.0001 8 7 3.3868 3.5614 1.2512 9 6 3.6273 4.8687 1.4736 10 8 4.2073 5.5293 0.6380 11 6 3.1766 5.5094 2.7610 12 1 2.0938 5.4220 2.8508 13 6 3.8349 4.8149 3.9251 14 1 3.2306 4.3996 4.7181 15 6 5.2086 4.7097 3.9780 16 7 5.9463 5.2491 3.0322 17 14 6.0220 3.8010 5.3929 18 1 4.9788 3.2898 6.3179 19 1 6.8122 2.6618 4.8606 20 1 6.9218 4.7283 6.1247 21 6 3.5651 6.9656 2.7603 22 6 3.3058 7.7495 1.6518 23 6 3.6626 9.0850 1.6509 24 6 4.2778 9.6368 2.7591 25 6 4.5366 8.8529 3.8679 26 6 4.1803 7.5172 3.8684 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 5.0833 0.8676 -1.2481 33 1 3.7156 -0.2720 -1.2483 34 1 3.5943 1.2646 -2.1385 35 1 3.5926 1.2652 2.1398 36 1 3.7146 -0.2716 1.2502 37 1 5.0823 0.8680 1.2508 38 1 3.3499 3.4409 -0.8424 39 1 4.9082 3.0254 -0.0892 40 1 2.9226 3.0331 1.9194 41 1 6.9128 5.1754 3.0694 42 1 2.8252 7.3185 0.7859 43 1 3.4605 9.6975 0.7847 44 1 4.5606 10.6791 2.7569 45 1 5.0176 9.2838 4.7335 46 1 4.3822 6.9049 4.7348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435906743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:50 Heat of formation + Delta-G solvation = -83.119048 kcal Electronic energy + Delta-G solvation = -26171.879188 eV Core-core repulsion = 22639.581296 eV Total energy + Delta-G solvation = -3532.297892 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87669 -40.06003 -38.90221 -35.78975 -35.45334 -33.32192 -32.59794 -31.45553 -31.33868 -29.28152 -28.41509 -27.18295 -25.52910 -23.62926 -22.94118 -22.17670 -21.06288 -20.81308 -18.67291 -17.92551 -17.33318 -17.02938 -16.76762 -16.67413 -16.33492 -15.79267 -15.44527 -15.38184 -15.20296 -14.47465 -14.38972 -14.23466 -13.96165 -13.89433 -13.64898 -13.45442 -13.22445 -13.07806 -12.95377 -12.86623 -12.78752 -12.69384 -12.48120 -12.36956 -12.25655 -11.95401 -11.75660 -11.46019 -11.36675 -11.13901 -10.63648 -10.42409 -10.12807 -9.60304 -9.36635 -9.08552 -8.04882 -6.24866 0.89138 0.94559 1.39840 1.45819 1.54273 2.35206 2.48450 2.66449 2.83905 3.21894 3.37185 3.69893 3.90226 4.00708 4.23996 4.35023 4.36824 4.40725 4.49991 4.51699 4.60206 4.61036 4.61508 4.64878 4.71752 4.80603 4.89374 4.93212 5.02042 5.06552 5.08116 5.11430 5.16195 5.18278 5.32800 5.34217 5.47052 5.56038 5.72196 5.89697 5.93233 5.98901 6.01774 6.37381 6.44687 6.54505 6.77711 7.12082 7.43588 7.96147 8.94349 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014505 B = 0.004863 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.892259 B = 5756.463073 C = 6795.085740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.393 6.393 4 C 0.111 3.889 5 C -0.170 4.170 6 C -0.174 4.174 7 C 0.145 3.855 8 N -0.720 5.720 9 C 0.548 3.452 10 O -0.587 6.587 11 C 0.046 3.954 12 H 0.063 0.937 13 C -0.533 4.533 14 H 0.070 0.930 15 C 0.041 3.959 16 N -0.873 5.873 17 Si 0.939 3.061 18 H -0.260 1.260 19 H -0.286 1.286 20 H -0.287 1.287 21 C -0.034 4.034 22 C -0.119 4.119 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.152 4.152 26 C -0.087 4.087 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.403 0.597 41 H 0.255 0.745 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.139 0.861 45 H 0.127 0.873 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -9.165 -3.988 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.313 6.313 4 C 0.072 3.928 5 C -0.227 4.227 6 C -0.232 4.232 7 C 0.021 3.979 8 N -0.372 5.372 9 C 0.337 3.663 10 O -0.467 6.467 11 C 0.025 3.975 12 H 0.081 0.919 13 C -0.571 4.571 14 H 0.088 0.912 15 C -0.163 4.163 16 N -0.507 5.507 17 Si 0.765 3.235 18 H -0.183 1.183 19 H -0.213 1.213 20 H -0.213 1.213 21 C -0.035 4.035 22 C -0.137 4.137 23 C -0.164 4.164 24 C -0.159 4.159 25 C -0.170 4.170 26 C -0.105 4.105 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.239 0.761 41 H 0.065 0.935 42 H 0.115 0.885 43 H 0.147 0.853 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.947 -8.522 -4.660 11.389 hybrid contribution 0.940 -0.821 0.863 1.517 sum -5.007 -9.343 -3.797 11.260 Atomic orbital electron populations 1.21757 0.93184 1.03212 1.02414 1.22724 0.95950 0.83478 1.01105 1.88008 1.20099 1.28006 1.95216 1.21574 0.81582 0.93460 0.96184 1.22313 1.02084 1.01732 0.96599 1.22365 1.01631 1.01609 0.97557 1.21086 0.98136 0.91423 0.87302 1.45647 1.61199 1.10358 1.19988 1.20998 0.76460 0.81521 0.87287 1.90491 1.43395 1.64105 1.48748 1.18000 0.96551 0.90407 0.92590 0.91947 1.20889 0.91554 1.38368 1.06245 0.91208 1.25558 0.97948 0.95318 0.97470 1.70261 1.05044 1.42199 1.33225 0.85786 0.78844 0.78474 0.80358 1.18331 1.21270 1.21345 1.19919 0.95465 0.95027 0.93097 1.21030 1.01311 0.94260 0.97128 1.21187 1.01262 0.94946 0.99029 1.21177 1.00837 1.00257 0.93633 1.21317 1.02028 0.94297 0.99338 1.21124 0.96245 0.94229 0.98885 0.89007 0.92791 0.92531 0.91876 0.92446 0.90939 0.89719 0.91618 0.92640 0.89776 0.91989 0.93210 0.92927 0.76127 0.93540 0.88531 0.85281 0.84347 0.85520 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 10.28 71.98 0.74 -1.83 16 2 C 0.04 0.86 5.86 71.98 0.42 1.28 16 3 O -0.39 -10.87 9.93 -148.98 -1.48 -12.35 16 4 C 0.11 3.07 0.80 -10.79 -0.01 3.06 16 5 C -0.17 -3.64 8.25 71.98 0.59 -3.04 16 6 C -0.17 -4.59 8.02 71.98 0.58 -4.01 16 7 C 0.15 5.34 4.84 86.38 0.42 5.76 16 8 N -0.72 -30.22 5.09 -463.05 -2.36 -32.58 16 9 C 0.55 27.33 5.45 87.66 0.48 27.81 16 10 O -0.59 -33.09 13.95 -3.04 -0.04 -33.13 16 11 C 0.05 2.25 2.78 -13.03 -0.04 2.22 16 12 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 13 C -0.53 -26.48 7.12 25.60 0.18 -26.30 16 14 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 15 C 0.04 2.11 3.99 84.65 0.34 2.45 16 16 N -0.87 -48.73 10.88 21.45 0.23 -48.50 16 17 Si 0.94 40.78 29.54 68.60 2.03 42.80 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 21 C -0.03 -1.70 4.52 -19.87 -0.09 -1.79 16 22 C -0.12 -5.63 8.21 22.27 0.18 -5.45 16 23 C -0.15 -5.98 10.05 22.27 0.22 -5.75 16 24 C -0.14 -5.39 10.05 22.27 0.22 -5.17 16 25 C -0.15 -6.29 10.05 22.27 0.22 -6.07 16 26 C -0.09 -4.16 8.20 22.27 0.18 -3.98 16 27 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.04 6.42 -2.39 -0.02 1.03 16 31 H 0.06 1.04 6.41 -2.39 -0.02 1.03 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.41 6.54 -2.38 -0.02 1.40 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.05 1.66 6.58 -2.39 -0.02 1.64 16 36 H 0.08 1.71 6.54 -2.39 -0.02 1.70 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.40 15.85 6.88 -92.70 -0.64 15.21 16 41 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.10 4.65 7.01 -2.91 -0.02 4.63 16 43 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 44 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 45 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 46 H 0.11 5.59 6.02 -2.91 -0.02 5.57 16 Total: -1.00 -65.18 365.17 3.36 -61.82 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: 0.33 Total: 42.75 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.65 Total: -20.81 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -2.12 Total: -81.08 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.52 Total: -45.48 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -65.18 3.36 -61.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435906743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.302 kcal (2) G-P(sol) polarization free energy of solvation -65.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds