Wall clock time and date at job start Tue Mar 31 2020 09:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42894 * 109.47068 * 2 1 4 4 C 1.42901 * 114.00223 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46817 * 60.00392 * 4 3 2 6 6 C 1.52992 * 109.46952 * 300.00424 * 4 3 2 7 7 C 1.52996 * 109.47320 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.47225 * 65.00170 * 7 4 3 9 9 C 1.34778 * 120.00321 * 179.97438 * 8 7 4 10 10 O 1.21285 * 119.99689 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00150 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47276 * 60.00374 * 11 9 8 13 13 C 1.50701 * 109.47254 * 300.00433 * 11 9 8 14 14 H 1.07998 * 119.99934 * 124.62155 * 13 11 9 15 15 C 1.37884 * 119.99511 * 304.34086 * 13 11 9 16 16 N 1.31510 * 120.00292 * 6.38394 * 15 13 11 17 17 Si 1.86804 * 119.99581 * 186.38490 * 15 13 11 18 18 H 1.48504 * 109.47332 * 89.99892 * 17 15 13 19 19 H 1.48502 * 109.46926 * 210.00218 * 17 15 13 20 20 H 1.48498 * 109.47001 * 329.99745 * 17 15 13 21 21 C 1.50707 * 109.47057 * 180.02562 * 11 9 8 22 22 C 1.38231 * 119.99747 * 313.11361 * 21 11 9 23 23 C 1.38239 * 119.99587 * 179.81056 * 22 21 11 24 24 C 1.38234 * 120.00152 * 0.39676 * 23 22 21 25 25 C 1.38241 * 119.99706 * 359.85520 * 24 23 22 26 26 C 1.38232 * 120.00142 * 359.96190 * 25 24 23 27 27 H 1.08993 * 109.47267 * 299.99877 * 1 2 3 28 28 H 1.09005 * 109.47126 * 59.99655 * 1 2 3 29 29 H 1.09000 * 109.46713 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46912 * 240.00463 * 2 1 3 31 31 H 1.08995 * 109.47214 * 120.00232 * 2 1 3 32 32 H 1.08996 * 109.46976 * 180.02562 * 5 4 3 33 33 H 1.09007 * 109.46939 * 300.00190 * 5 4 3 34 34 H 1.09000 * 109.47198 * 60.00142 * 5 4 3 35 35 H 1.09004 * 109.47142 * 299.99510 * 6 4 3 36 36 H 1.09004 * 109.47327 * 60.00095 * 6 4 3 37 37 H 1.09006 * 109.47274 * 179.97438 * 6 4 3 38 38 H 1.08999 * 109.47000 * 304.99983 * 7 4 3 39 39 H 1.08997 * 109.46936 * 185.00333 * 7 4 3 40 40 H 0.97001 * 120.00258 * 359.97438 * 8 7 4 41 41 H 0.97000 * 120.00092 * 179.97438 * 16 15 13 42 42 H 1.07999 * 120.00205 * 0.02562 * 22 21 11 43 43 H 1.07999 * 119.99763 * 180.23613 * 23 22 21 44 44 H 1.07991 * 120.00266 * 179.83487 * 24 23 22 45 45 H 1.08005 * 119.99490 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.99947 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9968 0.7813 -1.2484 6 6 3.9957 0.7815 1.2501 7 6 3.8254 2.9384 0.0012 8 7 3.3869 3.5603 1.2530 9 6 3.6284 4.8672 1.4769 10 8 4.2083 5.5285 0.6418 11 6 3.1767 5.5071 2.7644 12 1 3.6516 5.0036 3.6065 13 6 1.6795 5.3873 2.8868 14 1 1.2444 4.9255 3.7608 15 6 0.8650 5.8723 1.8855 16 7 1.3933 6.3250 0.7695 17 14 -0.9889 5.8866 2.1145 18 1 -1.4016 7.1724 2.7323 19 1 -1.6518 5.7365 0.7941 20 1 -1.3871 4.7621 2.9989 21 6 3.5654 6.9632 2.7650 22 6 4.8433 7.3376 2.3939 23 6 5.1986 8.6735 2.3907 24 6 4.2786 9.6343 2.7665 25 6 3.0022 9.2594 3.1427 26 6 2.6458 7.9238 3.1422 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.0834 0.8670 -1.2478 33 1 3.7157 -0.2719 -1.2484 34 1 3.5944 1.2648 -2.1386 35 1 3.5926 1.2652 2.1399 36 1 3.7147 -0.2717 1.2500 37 1 5.0824 0.8672 1.2503 38 1 3.3499 3.4416 -0.8407 39 1 4.9082 3.0254 -0.0880 40 1 2.9228 3.0315 1.9207 41 1 0.8202 6.6659 0.0650 42 1 5.5630 6.5867 2.1031 43 1 6.1958 8.9663 2.0972 44 1 4.5569 10.6777 2.7666 45 1 2.2835 10.0101 3.4367 46 1 1.6485 7.6310 3.4356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435906748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:01 Heat of formation + Delta-G solvation = -64.785225 kcal Electronic energy + Delta-G solvation = -26256.026545 eV Core-core repulsion = 22724.523667 eV Total energy + Delta-G solvation = -3531.502878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.33870 -38.58014 -37.19092 -34.37208 -33.48805 -31.88358 -30.75232 -30.46296 -29.65329 -27.53105 -27.40647 -25.62117 -23.70387 -22.58151 -21.22685 -20.49176 -19.81643 -19.03041 -16.85030 -16.50331 -15.93390 -15.53284 -15.17032 -15.01967 -14.74389 -14.28752 -14.06641 -13.61098 -13.41698 -13.31711 -13.16038 -12.59703 -12.44503 -12.31275 -12.26885 -12.09871 -11.96511 -11.90102 -11.68317 -11.41440 -11.26482 -11.22201 -10.96158 -10.88523 -10.69666 -10.36424 -10.26163 -9.99196 -9.61456 -9.35573 -9.29386 -8.64593 -8.16334 -7.79789 -7.65617 -7.35983 -6.05748 -4.19133 2.57739 2.63153 3.26921 3.35784 3.36399 3.79122 4.24849 4.36256 4.56356 4.84006 5.00000 5.04653 5.11644 5.20023 5.24408 5.30569 5.41095 5.50308 5.54467 5.74309 5.78333 5.88138 5.94394 5.98421 6.01223 6.06949 6.08493 6.18974 6.22206 6.27489 6.40458 6.47256 6.67889 6.71531 6.86608 6.99050 7.17264 7.24718 7.46202 7.57510 7.66646 7.72521 7.78092 7.86524 8.19972 8.33020 8.74056 8.95530 9.46993 9.86473 10.96229 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.005198 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.157776 B = 5385.352592 C = 6753.480785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.102 3.898 5 C -0.175 4.175 6 C -0.177 4.177 7 C 0.145 3.855 8 N -0.728 5.728 9 C 0.554 3.446 10 O -0.553 6.553 11 C 0.056 3.944 12 H 0.055 0.945 13 C -0.541 4.541 14 H 0.065 0.935 15 C 0.079 3.921 16 N -0.840 5.840 17 Si 0.885 3.115 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.014 4.014 22 C -0.099 4.099 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.074 4.074 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.264 0.736 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -10.548 0.431 11.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.062 3.938 5 C -0.232 4.232 6 C -0.234 4.234 7 C 0.020 3.980 8 N -0.381 5.381 9 C 0.343 3.657 10 O -0.430 6.430 11 C 0.035 3.965 12 H 0.073 0.927 13 C -0.579 4.579 14 H 0.083 0.917 15 C -0.129 4.129 16 N -0.472 5.472 17 Si 0.712 3.288 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.015 4.015 22 C -0.117 4.117 23 C -0.162 4.162 24 C -0.164 4.164 25 C -0.165 4.165 26 C -0.092 4.092 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.231 0.769 41 H 0.074 0.926 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.602 -9.808 -0.390 10.456 hybrid contribution -1.312 -0.395 -0.052 1.371 sum 2.290 -10.203 -0.442 10.467 Atomic orbital electron populations 1.21731 0.94085 1.01584 1.03469 1.22454 0.95300 0.85075 0.99641 1.88154 1.19940 1.25280 1.94862 1.21739 0.81520 0.96198 0.94318 1.22352 1.01757 1.00678 0.98462 1.22407 1.01789 1.00415 0.98810 1.20986 0.98399 0.88743 0.89823 1.45688 1.62079 1.11281 1.19066 1.20890 0.75235 0.79820 0.89746 1.90515 1.43074 1.61698 1.47750 1.17872 0.97592 0.89570 0.91484 0.92726 1.20654 0.88414 1.42789 1.06044 0.91661 1.25007 0.98461 0.94497 0.94935 1.70020 1.35029 1.37629 1.04526 0.86699 0.85968 0.78505 0.77600 1.20502 1.21287 1.19733 1.19886 0.91479 0.96440 0.93698 1.20994 0.96952 0.95170 0.98606 1.20838 0.98584 0.93703 1.03053 1.20773 0.94572 0.97847 1.03209 1.20999 0.95970 0.96401 1.03177 1.21191 0.99720 0.91195 0.97051 0.91602 0.92011 0.91651 0.93693 0.93419 0.91377 0.92193 0.91529 0.91123 0.92486 0.91441 0.91721 0.91668 0.76893 0.92560 0.87378 0.88081 0.88198 0.88024 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 37.16 0.38 -1.39 16 2 C 0.05 0.64 5.86 37.16 0.22 0.85 16 3 O -0.36 -5.84 9.93 -35.23 -0.35 -6.19 16 4 C 0.10 1.45 0.80 -90.62 -0.07 1.37 16 5 C -0.17 -2.02 8.25 37.16 0.31 -1.71 16 6 C -0.18 -2.13 8.02 37.15 0.30 -1.83 16 7 C 0.15 2.62 4.84 -4.05 -0.02 2.61 16 8 N -0.73 -14.95 5.09 -60.30 -0.31 -15.25 16 9 C 0.55 13.40 5.28 -10.99 -0.06 13.34 16 10 O -0.55 -15.02 13.86 5.55 0.08 -14.94 16 11 C 0.06 1.35 2.78 -94.07 -0.26 1.08 16 12 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.54 -13.56 7.11 -34.44 -0.24 -13.80 16 14 H 0.07 1.59 7.82 -52.49 -0.41 1.18 16 15 C 0.08 2.06 3.90 -17.82 -0.07 1.99 16 16 N -0.84 -23.59 11.11 55.43 0.62 -22.98 16 17 Si 0.88 20.54 29.54 -169.99 -5.02 15.52 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.01 -0.34 4.63 -104.62 -0.48 -0.83 16 22 C -0.10 -2.28 8.21 -39.58 -0.32 -2.61 16 23 C -0.14 -2.99 10.05 -39.58 -0.40 -3.39 16 24 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 25 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 26 C -0.07 -1.75 8.46 -39.59 -0.33 -2.09 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.49 6.42 -51.93 -0.33 0.15 16 31 H 0.05 0.53 6.41 -51.93 -0.33 0.19 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.59 6.54 -51.93 -0.34 0.25 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.92 6.57 -51.93 -0.34 0.58 16 36 H 0.06 0.59 6.54 -51.93 -0.34 0.25 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.40 7.71 6.87 -40.82 -0.28 7.43 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.11 2.46 6.99 -52.49 -0.37 2.09 16 43 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 44 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 45 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 46 H 0.13 3.13 6.05 -52.48 -0.32 2.81 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -30.80 365.39 -8.61 -39.41 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -7.27 Total: 12.17 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.86 Total: -13.24 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.31 Total: -38.23 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.27 Total: -21.13 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.80 -8.61 -39.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435906748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.380 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds