Wall clock time and date at job start Tue Mar 31 2020 09:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42894 * 109.47068 * 2 1 4 4 C 1.42901 * 114.00223 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46817 * 60.00392 * 4 3 2 6 6 C 1.52992 * 109.46952 * 300.00424 * 4 3 2 7 7 C 1.52996 * 109.47320 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.47225 * 65.00170 * 7 4 3 9 9 C 1.34778 * 120.00321 * 179.97438 * 8 7 4 10 10 O 1.21285 * 119.99689 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00150 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47276 * 60.00374 * 11 9 8 13 13 C 1.50701 * 109.47254 * 300.00433 * 11 9 8 14 14 H 1.07998 * 119.99934 * 124.62155 * 13 11 9 15 15 C 1.37884 * 119.99511 * 304.34086 * 13 11 9 16 16 N 1.31510 * 120.00292 * 6.38394 * 15 13 11 17 17 Si 1.86804 * 119.99581 * 186.38490 * 15 13 11 18 18 H 1.48504 * 109.47332 * 89.99892 * 17 15 13 19 19 H 1.48502 * 109.46926 * 210.00218 * 17 15 13 20 20 H 1.48498 * 109.47001 * 329.99745 * 17 15 13 21 21 C 1.50707 * 109.47057 * 180.02562 * 11 9 8 22 22 C 1.38231 * 119.99747 * 313.11361 * 21 11 9 23 23 C 1.38239 * 119.99587 * 179.81056 * 22 21 11 24 24 C 1.38234 * 120.00152 * 0.39676 * 23 22 21 25 25 C 1.38241 * 119.99706 * 359.85520 * 24 23 22 26 26 C 1.38232 * 120.00142 * 359.96190 * 25 24 23 27 27 H 1.08993 * 109.47267 * 299.99877 * 1 2 3 28 28 H 1.09005 * 109.47126 * 59.99655 * 1 2 3 29 29 H 1.09000 * 109.46713 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46912 * 240.00463 * 2 1 3 31 31 H 1.08995 * 109.47214 * 120.00232 * 2 1 3 32 32 H 1.08996 * 109.46976 * 180.02562 * 5 4 3 33 33 H 1.09007 * 109.46939 * 300.00190 * 5 4 3 34 34 H 1.09000 * 109.47198 * 60.00142 * 5 4 3 35 35 H 1.09004 * 109.47142 * 299.99510 * 6 4 3 36 36 H 1.09004 * 109.47327 * 60.00095 * 6 4 3 37 37 H 1.09006 * 109.47274 * 179.97438 * 6 4 3 38 38 H 1.08999 * 109.47000 * 304.99983 * 7 4 3 39 39 H 1.08997 * 109.46936 * 185.00333 * 7 4 3 40 40 H 0.97001 * 120.00258 * 359.97438 * 8 7 4 41 41 H 0.97000 * 120.00092 * 179.97438 * 16 15 13 42 42 H 1.07999 * 120.00205 * 0.02562 * 22 21 11 43 43 H 1.07999 * 119.99763 * 180.23613 * 23 22 21 44 44 H 1.07991 * 120.00266 * 179.83487 * 24 23 22 45 45 H 1.08005 * 119.99490 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.99947 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9968 0.7813 -1.2484 6 6 3.9957 0.7815 1.2501 7 6 3.8254 2.9384 0.0012 8 7 3.3869 3.5603 1.2530 9 6 3.6284 4.8672 1.4769 10 8 4.2083 5.5285 0.6418 11 6 3.1767 5.5071 2.7644 12 1 3.6516 5.0036 3.6065 13 6 1.6795 5.3873 2.8868 14 1 1.2444 4.9255 3.7608 15 6 0.8650 5.8723 1.8855 16 7 1.3933 6.3250 0.7695 17 14 -0.9889 5.8866 2.1145 18 1 -1.4016 7.1724 2.7323 19 1 -1.6518 5.7365 0.7941 20 1 -1.3871 4.7621 2.9989 21 6 3.5654 6.9632 2.7650 22 6 4.8433 7.3376 2.3939 23 6 5.1986 8.6735 2.3907 24 6 4.2786 9.6343 2.7665 25 6 3.0022 9.2594 3.1427 26 6 2.6458 7.9238 3.1422 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.0834 0.8670 -1.2478 33 1 3.7157 -0.2719 -1.2484 34 1 3.5944 1.2648 -2.1386 35 1 3.5926 1.2652 2.1399 36 1 3.7147 -0.2717 1.2500 37 1 5.0824 0.8672 1.2503 38 1 3.3499 3.4416 -0.8407 39 1 4.9082 3.0254 -0.0880 40 1 2.9228 3.0315 1.9207 41 1 0.8202 6.6659 0.0650 42 1 5.5630 6.5867 2.1031 43 1 6.1958 8.9663 2.0972 44 1 4.5569 10.6777 2.7666 45 1 2.2835 10.0101 3.4367 46 1 1.6485 7.6310 3.4356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435906748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:00 Heat of formation + Delta-G solvation = -83.076157 kcal Electronic energy + Delta-G solvation = -26256.819699 eV Core-core repulsion = 22724.523667 eV Total energy + Delta-G solvation = -3532.296032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84641 -40.04800 -38.88774 -35.77284 -35.43052 -33.28722 -32.61722 -31.47415 -31.36615 -29.26206 -28.36528 -27.16394 -25.53179 -23.64726 -22.94812 -22.17696 -21.02450 -20.78904 -18.67974 -17.87498 -17.40127 -16.97265 -16.73676 -16.68636 -16.32183 -15.76973 -15.62020 -15.34576 -14.92012 -14.69601 -14.33514 -14.11741 -14.01936 -13.92658 -13.62138 -13.43500 -13.22216 -13.03411 -12.97828 -12.86315 -12.74492 -12.67076 -12.53080 -12.35722 -12.25936 -11.94830 -11.76844 -11.42624 -11.38060 -11.14564 -10.65643 -10.39908 -10.07975 -9.55355 -9.38577 -9.10089 -8.07732 -6.24020 0.87284 0.91667 1.39980 1.43395 1.50461 2.35406 2.48797 2.75955 2.88291 3.21588 3.36002 3.73509 3.95670 4.03849 4.21625 4.33907 4.36062 4.37421 4.49239 4.50372 4.57628 4.61204 4.66555 4.67530 4.72874 4.83922 4.90593 4.95484 5.01251 5.04575 5.08811 5.11637 5.16481 5.17131 5.28842 5.37921 5.45780 5.53788 5.71365 5.88491 5.93343 5.98121 6.04781 6.42441 6.44391 6.52496 6.77782 7.16396 7.44281 8.01572 8.92700 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.005198 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.157776 B = 5385.352592 C = 6753.480785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.046 3.954 3 O -0.401 6.401 4 C 0.105 3.895 5 C -0.169 4.169 6 C -0.172 4.172 7 C 0.145 3.855 8 N -0.718 5.718 9 C 0.551 3.449 10 O -0.589 6.589 11 C 0.046 3.954 12 H 0.067 0.933 13 C -0.535 4.535 14 H 0.069 0.931 15 C 0.044 3.956 16 N -0.873 5.873 17 Si 0.936 3.064 18 H -0.275 1.275 19 H -0.298 1.298 20 H -0.261 1.261 21 C -0.037 4.037 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.097 4.097 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.254 0.746 42 H 0.101 0.899 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -11.437 1.070 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.322 6.322 4 C 0.066 3.934 5 C -0.227 4.227 6 C -0.229 4.229 7 C 0.021 3.979 8 N -0.370 5.370 9 C 0.341 3.659 10 O -0.469 6.469 11 C 0.025 3.975 12 H 0.085 0.915 13 C -0.572 4.572 14 H 0.088 0.912 15 C -0.161 4.161 16 N -0.507 5.507 17 Si 0.762 3.238 18 H -0.200 1.200 19 H -0.225 1.225 20 H -0.185 1.185 21 C -0.038 4.038 22 C -0.135 4.135 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.169 4.169 26 C -0.115 4.115 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.995 -10.743 0.282 11.465 hybrid contribution -1.409 -0.118 -0.221 1.431 sum 2.586 -10.861 0.061 11.165 Atomic orbital electron populations 1.21777 0.94054 1.03127 1.01922 1.22685 0.95407 0.83580 1.01262 1.88102 1.20894 1.27918 1.95237 1.21709 0.81326 0.93542 0.96849 1.22317 1.02517 1.01522 0.96339 1.22364 1.02366 1.01388 0.96769 1.21091 0.98437 0.91257 0.87136 1.45611 1.61103 1.10370 1.19935 1.20937 0.74885 0.80684 0.89441 1.90477 1.44871 1.62795 1.48757 1.17993 0.97199 0.90329 0.91956 0.91507 1.20860 0.89155 1.41586 1.05615 0.91245 1.25531 1.01627 0.94299 0.94603 1.70189 1.35702 1.39526 1.05264 0.85889 0.82020 0.78894 0.76969 1.20034 1.22468 1.18533 1.19971 0.92364 0.96488 0.94934 1.21060 0.96548 0.96396 0.99499 1.21223 1.00255 0.92842 1.01950 1.21195 0.93635 0.99689 1.01386 1.21330 0.97273 0.95863 1.02442 1.21176 0.99074 0.92577 0.98663 0.93331 0.93340 0.88563 0.91843 0.91770 0.89864 0.89785 0.92793 0.92499 0.90011 0.90204 0.95605 0.90874 0.76293 0.93691 0.88101 0.85080 0.84257 0.85482 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 10.28 71.99 0.74 -2.63 16 2 C 0.05 1.05 5.86 71.99 0.42 1.47 16 3 O -0.40 -12.76 9.93 -148.98 -1.48 -14.24 16 4 C 0.11 2.90 0.80 -10.80 -0.01 2.89 16 5 C -0.17 -3.61 8.25 71.98 0.59 -3.01 16 6 C -0.17 -3.78 8.02 71.98 0.58 -3.20 16 7 C 0.15 5.39 4.84 86.38 0.42 5.80 16 8 N -0.72 -30.28 5.09 -463.08 -2.36 -32.64 16 9 C 0.55 27.49 5.28 87.66 0.46 27.95 16 10 O -0.59 -33.16 13.86 -3.04 -0.04 -33.20 16 11 C 0.05 2.28 2.78 -13.03 -0.04 2.25 16 12 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 13 C -0.53 -27.15 7.11 25.60 0.18 -26.97 16 14 H 0.07 3.39 7.82 -2.91 -0.02 3.37 16 15 C 0.04 2.33 3.90 84.66 0.33 2.66 16 16 N -0.87 -50.57 11.11 21.45 0.24 -50.33 16 17 Si 0.94 42.72 29.54 68.60 2.03 44.75 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 21 C -0.04 -1.81 4.63 -19.86 -0.09 -1.90 16 22 C -0.12 -5.42 8.21 22.27 0.18 -5.24 16 23 C -0.14 -5.80 10.05 22.27 0.22 -5.58 16 24 C -0.14 -5.32 10.05 22.27 0.22 -5.09 16 25 C -0.15 -6.22 10.05 22.27 0.22 -6.00 16 26 C -0.10 -4.63 8.46 22.27 0.19 -4.45 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.19 6.42 -2.38 -0.02 1.18 16 31 H 0.06 1.23 6.41 -2.39 -0.02 1.21 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.39 6.54 -2.38 -0.02 1.38 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.41 6.57 -2.38 -0.02 1.39 16 36 H 0.08 1.41 6.54 -2.38 -0.02 1.39 16 37 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.40 15.90 6.87 -92.71 -0.64 15.27 16 41 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.10 4.71 6.99 -2.91 -0.02 4.69 16 43 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 44 H 0.14 4.13 8.06 -2.92 -0.02 4.10 16 45 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 46 H 0.11 5.58 6.05 -2.91 -0.02 5.56 16 Total: -1.00 -68.53 365.39 3.35 -65.18 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: 0.33 Total: 41.52 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 4.63 Total: -21.04 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.12 Total: -82.97 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -1.52 Total: -47.44 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -68.53 3.35 -65.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435906748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.896 kcal (2) G-P(sol) polarization free energy of solvation -68.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds