Wall clock time and date at job start Tue Mar 31 2020 08:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46992 * 2 1 4 4 C 1.46497 * 120.00141 * 270.00259 * 3 2 1 5 5 C 1.50705 * 109.46899 * 269.99956 * 4 3 2 6 6 H 1.07995 * 120.00267 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99944 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99975 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00156 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46917 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47503 * 119.99712 * 9 7 5 12 12 H 1.48508 * 109.47078 * 239.99848 * 9 7 5 13 13 C 1.34779 * 119.99900 * 89.99733 * 3 2 1 14 14 O 1.21280 * 119.99859 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00083 * 0.02562 * 13 3 2 16 16 C 1.52999 * 109.47154 * 179.97438 * 15 13 3 17 17 C 1.53002 * 109.47334 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47157 * 180.02562 * 17 16 15 19 19 C 1.50707 * 109.46986 * 180.02562 * 18 17 16 20 20 C 1.38289 * 119.96926 * 270.01927 * 19 18 17 21 21 C 1.38240 * 120.11036 * 180.02562 * 20 19 18 22 22 C 1.38173 * 120.05812 * 359.67646 * 21 20 19 23 23 C 1.38709 * 119.93675 * 0.57760 * 22 21 20 24 24 O 1.35905 * 120.05346 * 179.72475 * 23 22 21 25 25 C 1.38116 * 119.97322 * 89.99956 * 19 18 17 26 26 H 1.09007 * 109.47085 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47424 * 299.99497 * 1 2 3 28 28 H 1.08997 * 109.47081 * 60.00250 * 1 2 3 29 29 H 1.09000 * 109.47809 * 240.00131 * 2 1 3 30 30 H 1.09006 * 109.47332 * 119.99874 * 2 1 3 31 31 H 1.08999 * 109.47072 * 29.99549 * 4 3 2 32 32 H 1.08997 * 109.47481 * 149.99954 * 4 3 2 33 33 H 0.97010 * 120.00134 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47272 * 60.00007 * 15 13 3 35 35 H 1.09002 * 109.47466 * 299.99690 * 15 13 3 36 36 H 1.09002 * 109.47204 * 59.99846 * 16 15 13 37 37 H 1.08995 * 109.47231 * 300.00077 * 16 15 13 38 38 H 1.09002 * 109.47179 * 59.99735 * 17 16 15 39 39 H 1.09007 * 109.46916 * 299.99776 * 17 16 15 40 40 H 1.09002 * 109.47572 * 59.99634 * 18 17 16 41 41 H 1.09000 * 109.47040 * 299.99288 * 18 17 16 42 42 H 1.08001 * 119.94341 * 0.02562 * 20 19 18 43 43 H 1.08006 * 119.97312 * 179.97438 * 21 20 19 44 44 H 1.07996 * 120.03009 * 180.29712 * 22 21 20 45 45 H 0.96705 * 113.99576 * 269.72355 * 24 23 22 46 46 H 1.08003 * 120.03068 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3492 3.1267 -3.6175 9 14 5.9133 2.0966 -3.4170 10 1 6.6006 1.2405 -2.4171 11 1 5.9203 1.4184 -4.7381 12 1 6.6214 3.3975 -3.5246 13 6 2.2428 2.0166 1.1672 14 8 2.6466 3.1602 1.1672 15 6 1.9922 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 6 2.0701 1.5216 4.9602 18 6 2.4014 2.4591 6.1231 19 6 2.1519 1.7480 7.4283 20 6 0.9075 1.8199 8.0272 21 6 0.6756 1.1692 9.2247 22 6 1.6852 0.4397 9.8228 23 6 2.9357 0.3705 9.2266 24 8 3.9321 -0.3417 9.8157 25 6 3.1661 1.0249 8.0249 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0283 32 1 2.0954 3.1411 -1.1384 33 1 3.6753 3.5173 -4.4435 34 1 2.6227 0.4188 2.5299 35 1 0.9443 1.0115 2.5303 36 1 1.6938 3.1308 3.5778 37 1 3.3719 2.5375 3.5771 38 1 2.7007 0.6343 5.0174 39 1 1.0222 1.2271 5.0186 40 1 1.7705 3.3462 6.0658 41 1 3.4491 2.7539 6.0650 42 1 0.1155 2.3853 7.5587 43 1 -0.2970 1.2272 9.6908 44 1 1.5021 -0.0723 10.7558 45 1 4.4750 0.1737 10.4279 46 1 4.1378 0.9692 7.5568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518998908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:25 Heat of formation + Delta-G solvation = -104.452415 kcal Electronic energy + Delta-G solvation = -23940.706577 eV Core-core repulsion = 20407.483600 eV Total energy + Delta-G solvation = -3533.222976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = -0.15 seconds Orbital eigenvalues (eV) -40.79774 -40.62335 -38.04172 -37.01586 -36.16714 -34.91680 -33.19711 -31.59446 -30.87269 -30.04432 -28.73118 -26.10994 -24.66209 -23.95606 -23.48125 -22.35720 -21.74693 -19.77171 -18.89202 -18.62888 -17.76064 -17.28825 -17.18202 -16.99903 -16.53501 -16.18851 -16.00959 -15.48416 -14.89529 -14.75779 -14.60363 -14.44328 -14.32068 -13.87815 -13.71590 -13.53124 -13.23338 -13.22389 -12.96635 -12.86918 -12.70624 -12.55331 -12.47757 -12.24570 -12.15492 -12.11614 -11.95816 -11.78350 -11.68565 -11.40389 -11.28605 -10.66217 -10.53184 -9.75466 -9.48105 -9.41413 -8.23431 -6.38499 0.33135 0.40664 1.34728 1.37195 1.49208 1.89561 2.32097 2.47864 2.72046 3.05551 3.31015 3.68023 3.88081 3.95733 4.03662 4.10656 4.16196 4.25270 4.37784 4.44168 4.45807 4.53955 4.61722 4.67195 4.69318 4.75560 4.85864 4.93068 4.99893 5.02167 5.05840 5.06440 5.10585 5.21404 5.24520 5.34567 5.40997 5.49458 5.50544 5.51715 5.58486 5.71280 5.88020 5.96451 6.06419 6.69933 6.84810 6.86574 7.27977 7.53676 8.83735 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.002311 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.243028 B =12114.893304 C =12686.081648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.260 3.740 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.491 3.509 14 O -0.603 6.603 15 C -0.125 4.125 16 C -0.098 4.098 17 C -0.099 4.099 18 C -0.082 4.082 19 C -0.066 4.066 20 C -0.135 4.135 21 C -0.102 4.102 22 C -0.162 4.162 23 C 0.095 3.905 24 O -0.514 6.514 25 C -0.159 4.159 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.020 0.980 32 H -0.006 1.006 33 H 0.267 0.733 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.139 0.861 45 H 0.408 0.592 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 -8.639 26.759 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.139 3.861 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.207 1.207 13 C 0.280 3.720 14 O -0.484 6.484 15 C -0.165 4.165 16 C -0.137 4.137 17 C -0.137 4.137 18 C -0.119 4.119 19 C -0.066 4.066 20 C -0.153 4.153 21 C -0.120 4.120 22 C -0.180 4.180 23 C 0.051 3.949 24 O -0.327 6.327 25 C -0.178 4.178 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.038 0.962 32 H 0.012 0.988 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.157 0.843 45 H 0.267 0.733 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.266 -8.438 26.248 28.274 hybrid contribution 1.228 0.722 -0.665 1.572 sum -5.038 -7.715 25.582 27.191 Atomic orbital electron populations 1.22150 0.94577 1.03473 1.01669 1.21740 0.95323 0.81348 1.03849 1.48347 1.63936 1.15144 1.06363 1.18682 0.95243 0.91451 0.80744 1.21738 0.97873 1.31831 1.06479 0.92975 1.25899 1.02540 0.94501 0.96468 1.70067 1.37731 1.34302 1.14833 0.85346 0.78873 0.78030 0.78420 1.19099 1.19313 1.20724 1.21607 0.76810 0.86580 0.86958 1.90620 1.48458 1.21050 1.88321 1.21745 1.05281 0.99862 0.89601 1.21280 1.01417 0.97909 0.93053 1.21473 1.02704 0.98011 0.91481 1.20633 1.02705 0.98095 0.90482 1.19902 0.93603 0.96897 0.96247 1.21364 0.96805 1.00912 0.96190 1.21338 0.99682 0.95755 0.95191 1.21639 0.93286 1.01261 1.01858 1.18641 0.89102 0.93900 0.93296 1.84774 1.45385 1.39428 1.63143 1.21466 1.00526 0.98983 0.96818 0.88635 0.91883 0.94540 0.91326 0.87968 0.96226 0.98782 0.92411 0.87337 0.86557 0.92545 0.93362 0.91410 0.90386 0.90145 0.91159 0.84293 0.83319 0.84274 0.73277 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.24 71.98 0.74 -3.24 16 2 C 0.10 3.06 5.93 86.38 0.51 3.58 16 3 N -0.61 -26.27 2.46 -826.16 -2.03 -28.30 16 4 C 0.26 14.49 5.16 85.64 0.44 14.93 16 5 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 9 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 13 C 0.49 20.67 7.67 87.65 0.67 21.34 16 14 O -0.60 -31.99 15.56 -3.03 -0.05 -32.03 16 15 C -0.13 -3.39 4.25 29.85 0.13 -3.26 16 16 C -0.10 -2.54 4.50 30.59 0.14 -2.40 16 17 C -0.10 -1.82 5.20 30.59 0.16 -1.66 16 18 C -0.08 -1.43 5.34 29.85 0.16 -1.27 16 19 C -0.07 -1.14 5.13 -19.88 -0.10 -1.25 16 20 C -0.13 -2.01 9.70 22.28 0.22 -1.79 16 21 C -0.10 -1.35 10.04 22.25 0.22 -1.13 16 22 C -0.16 -2.39 9.99 22.37 0.22 -2.17 16 23 C 0.09 1.64 6.70 22.51 0.15 1.79 16 24 O -0.51 -8.01 13.50 -92.48 -1.25 -9.26 16 25 C -0.16 -2.90 9.64 22.36 0.22 -2.68 16 26 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.06 1.42 7.22 -2.39 -0.02 1.40 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 30 H 0.10 2.39 6.44 -2.38 -0.02 2.37 16 31 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 32 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 33 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 34 H 0.11 2.48 7.40 -2.39 -0.02 2.46 16 35 H 0.12 2.44 7.19 -2.39 -0.02 2.42 16 36 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 37 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 41 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 42 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 44 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.41 2.37 9.06 -74.05 -0.67 1.69 16 46 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -79.99 384.18 3.85 -76.14 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.28 Total: 12.98 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.58 Total: -10.22 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.74 Total: -85.41 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.30 Total: -41.30 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -79.99 3.85 -76.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518998908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.308 kcal (2) G-P(sol) polarization free energy of solvation -79.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.14 seconds