Wall clock time and date at job start Tue Mar 31 2020 09:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38046 * 126.29511 * 2 1 4 4 C 1.47427 * 126.41252 * 0.03649 * 3 2 1 5 5 O 1.21605 * 119.99947 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99648 * 179.72442 * 4 3 2 7 7 C 1.46504 * 120.00032 * 180.27854 * 6 4 3 8 8 C 1.52994 * 109.47581 * 182.69591 * 7 6 4 9 9 C 1.52997 * 115.55180 * 268.87742 * 8 7 6 10 10 C 1.53001 * 109.47030 * 297.04526 * 9 8 7 11 11 C 1.53009 * 109.47098 * 57.03956 * 9 8 7 12 12 C 1.53001 * 117.50178 * 123.16271 * 8 7 6 13 13 C 1.52999 * 60.00380 * 252.51155 * 12 8 7 14 14 C 1.41289 * 107.16829 * 180.29848 * 3 2 1 15 15 N 1.30448 * 108.02649 * 359.55990 * 14 3 2 16 16 N 1.34262 * 126.28592 * 180.02562 * 2 1 3 17 17 C 1.46495 * 125.75920 * 359.94027 * 16 2 1 18 18 C 1.50703 * 109.47353 * 89.99936 * 17 16 2 19 19 H 1.08005 * 119.99567 * 0.02562 * 18 17 16 20 20 C 1.37866 * 120.00157 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00394 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00080 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47100 * 59.99478 * 22 20 18 24 24 H 1.48499 * 109.46936 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46599 * 299.99573 * 22 20 18 26 26 H 1.09001 * 109.47646 * 89.97100 * 1 2 3 27 27 H 1.08997 * 109.47532 * 209.97706 * 1 2 3 28 28 H 1.09008 * 109.46781 * 329.97149 * 1 2 3 29 29 H 0.96997 * 120.00461 * 0.27623 * 6 4 3 30 30 H 1.09010 * 109.46771 * 302.69642 * 7 6 4 31 31 H 1.09005 * 109.47158 * 62.69001 * 7 6 4 32 32 H 1.08995 * 109.47780 * 177.04414 * 9 8 7 33 33 H 1.08997 * 109.47327 * 65.82425 * 10 9 8 34 34 H 1.09000 * 109.47450 * 185.83043 * 10 9 8 35 35 H 1.09003 * 109.46993 * 305.83174 * 10 9 8 36 36 H 1.08996 * 109.46538 * 60.00611 * 11 9 8 37 37 H 1.09002 * 109.47085 * 180.02562 * 11 9 8 38 38 H 1.08993 * 109.47247 * 300.00285 * 11 9 8 39 39 H 1.08997 * 117.49940 * 0.02562 * 12 8 7 40 40 H 1.08998 * 117.49698 * 145.02016 * 12 8 7 41 41 H 1.08996 * 117.50388 * 252.51060 * 13 12 8 42 42 H 1.09002 * 117.49389 * 107.48207 * 13 12 8 43 43 H 1.07997 * 125.98422 * 179.73118 * 14 3 2 44 44 H 1.09001 * 109.47483 * 210.00533 * 17 16 2 45 45 H 1.09004 * 109.47077 * 330.00131 * 17 16 2 46 46 H 0.97000 * 119.99980 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 0.0008 5 8 0.6996 2.7877 0.0019 6 7 2.8000 3.5105 0.0063 7 6 2.3646 4.9094 0.0132 8 6 3.5888 5.8249 -0.0494 9 6 4.1619 6.2538 1.3028 10 6 3.1192 7.0784 2.0603 11 6 4.5224 5.0120 2.1209 12 6 3.6596 6.8324 -1.1987 13 6 4.5760 5.6072 -1.1979 14 6 3.6590 0.6497 -0.0070 15 7 3.6340 -0.6545 -0.0014 16 7 2.3015 -1.0822 -0.0005 17 6 1.8499 -2.4759 0.0001 18 6 1.6939 -2.9540 -1.4205 19 1 1.9099 -2.2866 -2.2417 20 6 1.2753 -4.2433 -1.6718 21 7 1.0127 -5.0563 -0.6718 22 14 1.0825 -4.8363 -3.4328 23 1 2.3883 -4.7400 -4.1332 24 1 0.6246 -6.2489 -3.4321 25 1 0.0818 -3.9914 -4.1327 26 1 -0.3634 0.0005 -1.0276 27 1 -0.3634 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5143 29 1 3.7463 3.2972 0.0057 30 1 1.7270 5.0957 -0.8511 31 1 1.8060 5.1115 0.9271 32 1 5.0561 6.8564 1.1439 33 1 2.2673 6.4460 2.3100 34 1 3.5614 7.4706 2.9761 35 1 2.7859 7.9061 1.4343 36 1 5.2653 4.4246 1.5813 37 1 4.9303 5.3176 3.0845 38 1 3.6282 4.4095 2.2799 39 1 2.8338 6.8432 -1.9100 40 1 4.1143 7.8011 -0.9915 41 1 5.6335 5.7697 -0.9903 42 1 4.3531 4.8116 -1.9090 43 1 4.5448 1.2674 -0.0129 44 1 2.5849 -3.0958 0.5135 45 1 0.8917 -2.5470 0.5148 46 1 0.7178 -5.9633 -0.8487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826715708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:02 Heat of formation + Delta-G solvation = 34.815253 kcal Electronic energy + Delta-G solvation = -25068.212214 eV Core-core repulsion = 21573.321088 eV Total energy + Delta-G solvation = -3494.891126 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.77410 -39.68643 -38.12529 -34.05562 -33.73098 -33.59309 -32.03372 -31.11204 -28.17281 -27.39529 -26.80900 -26.07090 -23.42776 -22.82121 -22.66185 -21.73239 -19.77224 -19.40713 -18.49825 -16.97481 -16.73238 -16.14148 -15.77075 -15.21320 -14.93075 -14.76601 -14.47694 -14.09802 -13.89225 -13.70869 -13.41863 -13.03823 -12.88303 -12.62216 -12.46581 -12.35463 -12.27854 -12.07191 -11.76945 -11.75386 -11.48502 -11.45555 -11.43377 -11.12660 -10.86426 -10.78247 -10.36923 -10.36249 -10.23269 -10.07728 -9.94437 -9.31792 -8.86414 -8.70011 -8.56822 -7.87858 -6.32808 -4.40738 2.22883 2.82215 3.11401 3.20501 3.24412 3.27870 3.42490 3.82717 3.96581 4.24906 4.28293 4.44209 4.56329 4.67533 5.00905 5.04108 5.10388 5.12784 5.18435 5.29105 5.39805 5.45855 5.50237 5.56433 5.64851 5.66509 5.70842 5.75135 5.76912 5.81969 5.88686 5.97633 6.01424 6.07330 6.15131 6.19034 6.44648 6.58425 6.69126 6.82041 6.92003 7.18207 7.56916 7.78116 7.79321 7.83905 8.40158 8.63924 8.67925 9.26113 10.75373 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.002868 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.542678 B = 9759.531428 C = 9858.883491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.164 3.836 3 C -0.332 4.332 4 C 0.602 3.398 5 O -0.558 6.558 6 N -0.730 5.730 7 C 0.162 3.838 8 C -0.136 4.136 9 C -0.055 4.055 10 C -0.148 4.148 11 C -0.150 4.150 12 C -0.164 4.164 13 C -0.171 4.171 14 C 0.057 3.943 15 N -0.296 5.296 16 N -0.314 5.314 17 C 0.252 3.748 18 C -0.540 4.540 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.398 0.602 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.174 0.826 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.538 21.928 3.357 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.027 3.973 3 C -0.347 4.347 4 C 0.392 3.608 5 O -0.438 6.438 6 N -0.382 5.382 7 C 0.038 3.962 8 C -0.137 4.137 9 C -0.074 4.074 10 C -0.205 4.205 11 C -0.207 4.207 12 C -0.201 4.201 13 C -0.208 4.208 14 C -0.130 4.130 15 N -0.116 5.116 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.528 5.528 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.232 0.768 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.191 0.809 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.305 20.659 3.427 21.603 hybrid contribution 0.080 0.169 -1.012 1.029 sum 5.385 20.829 2.415 21.649 Atomic orbital electron populations 1.20564 0.86855 1.03743 1.03887 1.21476 0.94942 0.86552 0.94307 1.19688 0.93078 0.92582 1.29400 1.17315 0.85018 0.83912 0.74521 1.90688 1.16761 1.84518 1.51826 1.45779 1.09772 1.05219 1.77466 1.20698 0.93679 0.79537 1.02261 1.21769 0.98780 1.01965 0.91137 1.20638 0.97799 0.96688 0.92240 1.21841 0.99079 0.99831 0.99729 1.21867 1.02048 0.97445 0.99344 1.23031 1.02675 0.94222 1.00211 1.23038 0.96487 1.00527 1.00752 1.23694 0.96325 0.92607 1.00351 1.77134 0.98628 1.12272 1.23560 1.49358 1.02479 1.08284 1.48998 1.19838 0.96387 0.70947 0.99391 1.21213 1.47487 0.98158 0.91018 0.91724 1.24918 0.94441 0.95977 0.98287 1.69906 1.44448 1.07229 1.31169 0.86381 0.78881 0.77753 0.83515 1.19906 1.20861 1.19837 0.89890 0.90924 0.88826 0.76766 0.91661 0.91158 0.91222 0.92262 0.92739 0.92574 0.92583 0.92747 0.91834 0.88569 0.88660 0.88599 0.88339 0.80918 0.92543 0.92580 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.57 36.00 0.34 -1.36 16 2 C 0.16 3.39 7.01 -81.60 -0.57 2.81 16 3 C -0.33 -6.11 6.13 -105.07 -0.64 -6.75 16 4 C 0.60 10.03 7.81 -12.52 -0.10 9.93 16 5 O -0.56 -10.73 14.84 5.27 0.08 -10.65 16 6 N -0.73 -8.96 4.64 -61.38 -0.28 -9.24 16 7 C 0.16 1.74 4.85 -4.04 -0.02 1.72 16 8 C -0.14 -1.09 1.19 -154.51 -0.18 -1.28 16 9 C -0.06 -0.40 2.74 -90.62 -0.25 -0.65 16 10 C -0.15 -1.06 8.93 37.16 0.33 -0.73 16 11 C -0.15 -1.19 8.49 37.16 0.32 -0.87 16 12 C -0.16 -1.18 9.90 -26.73 -0.26 -1.45 16 13 C -0.17 -1.29 9.42 -26.73 -0.25 -1.54 16 14 C 0.06 1.00 11.50 -16.98 -0.20 0.81 16 15 N -0.30 -6.40 12.50 30.86 0.39 -6.01 16 16 N -0.31 -7.16 3.56 -57.77 -0.21 -7.36 16 17 C 0.25 6.31 5.97 -5.19 -0.03 6.27 16 18 C -0.54 -14.65 9.39 -34.44 -0.32 -14.97 16 19 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 20 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.71 13.29 55.43 0.74 -23.98 16 22 Si 0.91 20.90 29.54 -169.99 -5.02 15.87 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 28 H 0.09 1.65 6.50 -51.92 -0.34 1.31 16 29 H 0.40 4.15 6.86 -40.82 -0.28 3.87 16 30 H 0.07 0.77 7.87 -51.92 -0.41 0.36 16 31 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 32 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 33 H 0.06 0.48 6.84 -51.93 -0.36 0.12 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.60 7.07 -51.93 -0.37 0.24 16 39 H 0.10 0.71 8.03 -51.93 -0.42 0.30 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.17 2.19 7.50 -52.49 -0.39 1.80 16 44 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -30.33 376.78 -7.97 -38.30 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.40 Total: 3.73 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.94 Total: -6.33 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.63 Total: -46.60 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.33 -7.97 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.114 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds