Wall clock time and date at job start Tue Mar 31 2020 09:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38046 * 126.29511 * 2 1 4 4 C 1.47427 * 126.41252 * 0.03649 * 3 2 1 5 5 O 1.21605 * 119.99947 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99648 * 179.72442 * 4 3 2 7 7 C 1.46504 * 120.00032 * 180.27854 * 6 4 3 8 8 C 1.52994 * 109.47581 * 182.69591 * 7 6 4 9 9 C 1.52997 * 115.55180 * 268.87742 * 8 7 6 10 10 C 1.53001 * 109.47030 * 297.04526 * 9 8 7 11 11 C 1.53009 * 109.47098 * 57.03956 * 9 8 7 12 12 C 1.53001 * 117.50178 * 123.16271 * 8 7 6 13 13 C 1.52999 * 60.00380 * 252.51155 * 12 8 7 14 14 C 1.41289 * 107.16829 * 180.29848 * 3 2 1 15 15 N 1.30448 * 108.02649 * 359.55990 * 14 3 2 16 16 N 1.34262 * 126.28592 * 180.02562 * 2 1 3 17 17 C 1.46495 * 125.75920 * 359.94027 * 16 2 1 18 18 C 1.50703 * 109.47353 * 89.99936 * 17 16 2 19 19 H 1.08005 * 119.99567 * 0.02562 * 18 17 16 20 20 C 1.37866 * 120.00157 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00394 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00080 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47100 * 59.99478 * 22 20 18 24 24 H 1.48499 * 109.46936 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46599 * 299.99573 * 22 20 18 26 26 H 1.09001 * 109.47646 * 89.97100 * 1 2 3 27 27 H 1.08997 * 109.47532 * 209.97706 * 1 2 3 28 28 H 1.09008 * 109.46781 * 329.97149 * 1 2 3 29 29 H 0.96997 * 120.00461 * 0.27623 * 6 4 3 30 30 H 1.09010 * 109.46771 * 302.69642 * 7 6 4 31 31 H 1.09005 * 109.47158 * 62.69001 * 7 6 4 32 32 H 1.08995 * 109.47780 * 177.04414 * 9 8 7 33 33 H 1.08997 * 109.47327 * 65.82425 * 10 9 8 34 34 H 1.09000 * 109.47450 * 185.83043 * 10 9 8 35 35 H 1.09003 * 109.46993 * 305.83174 * 10 9 8 36 36 H 1.08996 * 109.46538 * 60.00611 * 11 9 8 37 37 H 1.09002 * 109.47085 * 180.02562 * 11 9 8 38 38 H 1.08993 * 109.47247 * 300.00285 * 11 9 8 39 39 H 1.08997 * 117.49940 * 0.02562 * 12 8 7 40 40 H 1.08998 * 117.49698 * 145.02016 * 12 8 7 41 41 H 1.08996 * 117.50388 * 252.51060 * 13 12 8 42 42 H 1.09002 * 117.49389 * 107.48207 * 13 12 8 43 43 H 1.07997 * 125.98422 * 179.73118 * 14 3 2 44 44 H 1.09001 * 109.47483 * 210.00533 * 17 16 2 45 45 H 1.09004 * 109.47077 * 330.00131 * 17 16 2 46 46 H 0.97000 * 119.99980 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 0.0008 5 8 0.6996 2.7877 0.0019 6 7 2.8000 3.5105 0.0063 7 6 2.3646 4.9094 0.0132 8 6 3.5888 5.8249 -0.0494 9 6 4.1619 6.2538 1.3028 10 6 3.1192 7.0784 2.0603 11 6 4.5224 5.0120 2.1209 12 6 3.6596 6.8324 -1.1987 13 6 4.5760 5.6072 -1.1979 14 6 3.6590 0.6497 -0.0070 15 7 3.6340 -0.6545 -0.0014 16 7 2.3015 -1.0822 -0.0005 17 6 1.8499 -2.4759 0.0001 18 6 1.6939 -2.9540 -1.4205 19 1 1.9099 -2.2866 -2.2417 20 6 1.2753 -4.2433 -1.6718 21 7 1.0127 -5.0563 -0.6718 22 14 1.0825 -4.8363 -3.4328 23 1 2.3883 -4.7400 -4.1332 24 1 0.6246 -6.2489 -3.4321 25 1 0.0818 -3.9914 -4.1327 26 1 -0.3634 0.0005 -1.0276 27 1 -0.3634 -0.8901 0.5134 28 1 -0.3633 0.8898 0.5143 29 1 3.7463 3.2972 0.0057 30 1 1.7270 5.0957 -0.8511 31 1 1.8060 5.1115 0.9271 32 1 5.0561 6.8564 1.1439 33 1 2.2673 6.4460 2.3100 34 1 3.5614 7.4706 2.9761 35 1 2.7859 7.9061 1.4343 36 1 5.2653 4.4246 1.5813 37 1 4.9303 5.3176 3.0845 38 1 3.6282 4.4095 2.2799 39 1 2.8338 6.8432 -1.9100 40 1 4.1143 7.8011 -0.9915 41 1 5.6335 5.7697 -0.9903 42 1 4.3531 4.8116 -1.9090 43 1 4.5448 1.2674 -0.0129 44 1 2.5849 -3.0958 0.5135 45 1 0.8917 -2.5470 0.5148 46 1 0.7178 -5.9633 -0.8487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826715708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:01 Heat of formation + Delta-G solvation = 17.621091 kcal Electronic energy + Delta-G solvation = -25068.957809 eV Core-core repulsion = 21573.321088 eV Total energy + Delta-G solvation = -3495.636721 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.30921 -40.62379 -39.23562 -35.82806 -35.04608 -34.20250 -33.76038 -32.73443 -29.65829 -28.48621 -27.99181 -27.30480 -25.29153 -23.62561 -23.36806 -22.88452 -21.16698 -20.74384 -19.53933 -18.85847 -18.22163 -16.95389 -16.89656 -16.68469 -16.36038 -16.10159 -15.79677 -15.36817 -15.17203 -14.67674 -14.42014 -14.29207 -14.05476 -13.97241 -13.69951 -13.59821 -13.50417 -13.38629 -13.08950 -12.97434 -12.95140 -12.69298 -12.31160 -12.30062 -12.09846 -12.01867 -11.88251 -11.73841 -11.41565 -11.00165 -10.93392 -10.76349 -10.54533 -10.26484 -10.03124 -9.41463 -8.38178 -6.54840 0.69281 1.33033 1.38348 1.38916 1.47425 1.65646 2.29128 2.33559 2.57120 2.93763 3.00614 3.64941 3.74696 3.77247 3.79584 3.89981 4.08899 4.14764 4.24741 4.42299 4.50233 4.51276 4.58094 4.61839 4.75164 4.79815 4.85575 4.86363 4.88483 4.91907 5.05455 5.07789 5.10272 5.11853 5.17383 5.19364 5.33247 5.38181 5.46797 5.48498 5.57143 5.59210 5.68606 5.74400 6.04655 6.54010 6.67096 6.85535 7.16296 7.39852 8.69557 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.002868 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.542678 B = 9759.531428 C = 9858.883491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 C -0.330 4.330 4 C 0.602 3.398 5 O -0.587 6.587 6 N -0.708 5.708 7 C 0.162 3.838 8 C -0.138 4.138 9 C -0.050 4.050 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.167 4.167 14 C 0.080 3.920 15 N -0.335 5.335 16 N -0.338 5.338 17 C 0.268 3.732 18 C -0.557 4.557 19 H 0.052 0.948 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.273 1.273 25 H -0.267 1.267 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.409 0.591 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.224 0.776 44 H 0.031 0.969 45 H 0.050 0.950 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 23.958 2.546 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 C -0.345 4.345 4 C 0.392 3.608 5 O -0.469 6.469 6 N -0.359 5.359 7 C 0.039 3.961 8 C -0.139 4.139 9 C -0.069 4.069 10 C -0.205 4.205 11 C -0.207 4.207 12 C -0.195 4.195 13 C -0.204 4.204 14 C -0.107 4.107 15 N -0.155 5.155 16 N -0.115 5.115 17 C 0.149 3.851 18 C -0.595 4.595 19 H 0.070 0.930 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.192 1.192 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.246 0.754 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.240 0.760 44 H 0.050 0.950 45 H 0.068 0.932 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.666 22.726 2.625 23.828 hybrid contribution -0.296 -0.317 -0.713 0.834 sum 6.371 22.409 1.913 23.375 Atomic orbital electron populations 1.20539 0.85985 1.03978 1.03857 1.21959 0.95899 0.86783 0.94560 1.19972 0.93255 0.93108 1.28173 1.17147 0.85096 0.83882 0.74703 1.90676 1.18061 1.84775 1.53346 1.45623 1.09717 1.05212 1.75381 1.20761 0.95044 0.78823 1.01451 1.21639 0.97994 1.02149 0.92076 1.20625 0.98219 0.96532 0.91493 1.21840 0.98655 0.99735 1.00240 1.21869 1.01313 0.97582 0.99976 1.23106 1.02461 0.94788 0.99155 1.23087 0.97201 1.00395 0.99766 1.24449 0.97572 0.91587 0.97119 1.77090 0.98293 1.14390 1.25726 1.49098 1.03380 1.07723 1.51315 1.19357 0.95258 0.72367 0.98129 1.21371 1.48029 0.98534 0.91574 0.92995 1.25730 0.93789 0.95907 1.02301 1.69991 1.44753 1.07634 1.33105 0.85408 0.78847 0.77693 0.78598 1.19783 1.19719 1.19155 0.89991 0.91085 0.88056 0.75381 0.92703 0.91819 0.89720 0.93676 0.91986 0.92084 0.91944 0.92175 0.93741 0.88965 0.87071 0.87065 0.89215 0.75989 0.95049 0.93224 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 9.57 71.23 0.68 -2.54 16 2 C 0.14 6.00 7.01 42.14 0.30 6.29 16 3 C -0.33 -11.88 6.13 -20.15 -0.12 -12.00 16 4 C 0.60 19.46 7.81 86.66 0.68 20.14 16 5 O -0.59 -22.35 14.84 -4.05 -0.06 -22.41 16 6 N -0.71 -16.13 4.64 -466.36 -2.16 -18.29 16 7 C 0.16 3.26 4.85 86.38 0.42 3.68 16 8 C -0.14 -1.88 1.19 -52.18 -0.06 -1.94 16 9 C -0.05 -0.60 2.74 -10.79 -0.03 -0.63 16 10 C -0.15 -1.83 8.93 71.98 0.64 -1.19 16 11 C -0.15 -2.03 8.49 71.99 0.61 -1.42 16 12 C -0.16 -1.84 9.90 30.59 0.30 -1.54 16 13 C -0.17 -2.01 9.42 30.60 0.29 -1.73 16 14 C 0.08 2.65 11.50 85.65 0.99 3.64 16 15 N -0.34 -14.48 12.50 -56.28 -0.70 -15.18 16 16 N -0.34 -15.77 3.56 -336.70 -1.20 -16.97 16 17 C 0.27 13.95 5.97 85.63 0.51 14.46 16 18 C -0.56 -30.93 9.39 25.60 0.24 -30.69 16 19 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 20 C 0.02 1.31 5.46 84.65 0.46 1.78 16 21 N -0.92 -51.60 13.29 21.44 0.28 -51.31 16 22 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 27 H 0.07 2.64 7.05 -2.39 -0.02 2.62 16 28 H 0.10 3.61 6.50 -2.38 -0.02 3.60 16 29 H 0.41 7.40 6.86 -92.71 -0.64 6.77 16 30 H 0.05 1.25 7.87 -2.38 -0.02 1.23 16 31 H 0.06 1.41 6.51 -2.38 -0.02 1.39 16 32 H 0.08 0.82 8.11 -2.39 -0.02 0.80 16 33 H 0.04 0.68 6.84 -2.39 -0.02 0.67 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.04 0.77 7.07 -2.39 -0.02 0.75 16 39 H 0.09 1.17 8.03 -2.39 -0.02 1.15 16 40 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.22 4.81 7.50 -2.91 -0.02 4.79 16 44 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.05 2.60 7.02 -2.38 -0.02 2.58 16 46 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -66.36 376.78 4.43 -61.93 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.34 Total: 21.09 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 5.90 Total: -3.69 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -3.78 Total: -101.75 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.06 Total: -22.41 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -66.36 4.43 -61.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.550 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds