Wall clock time and date at job start Tue Mar 31 2020 08:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47319 * 2 1 4 4 C 1.38675 * 120.41668 * 90.00226 * 3 2 1 5 5 C 1.38624 * 118.42148 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.16076 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.61968 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47294 * 124.99654 * 7 6 5 9 9 O 1.21280 * 119.99922 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99913 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99688 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47175 * 35.00864 * 11 10 8 13 13 C 1.52994 * 109.47279 * 275.00066 * 11 10 8 14 14 C 1.52999 * 109.46721 * 155.00527 * 11 10 8 15 15 N 1.46508 * 109.47098 * 304.99903 * 14 11 10 16 16 C 1.46497 * 120.00006 * 269.99911 * 15 14 11 17 17 C 1.36931 * 119.99723 * 90.00234 * 15 14 11 18 18 H 1.07999 * 120.00228 * 22.02826 * 17 15 14 19 19 C 1.38813 * 119.99928 * 202.02519 * 17 15 14 20 20 N 1.31619 * 119.99911 * 11.43946 * 19 17 15 21 21 Si 1.86801 * 120.00144 * 191.43485 * 19 17 15 22 22 H 1.48500 * 109.47150 * 60.00573 * 21 19 17 23 23 H 1.48503 * 109.46844 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47052 * 299.99909 * 21 19 17 25 25 N 1.31853 * 120.76151 * 0.02562 * 6 5 4 26 26 C 1.31887 * 121.72932 * 359.70632 * 25 6 5 27 27 H 1.09004 * 109.46646 * 299.99592 * 1 2 3 28 28 H 1.08998 * 109.47229 * 59.99494 * 1 2 3 29 29 H 1.09001 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47052 * 240.00233 * 2 1 3 31 31 H 1.09003 * 109.47657 * 120.00720 * 2 1 3 32 32 H 1.08002 * 120.78615 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.42202 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46924 * 245.00485 * 7 6 5 35 35 H 1.09001 * 109.46799 * 4.99606 * 7 6 5 36 36 H 0.96997 * 120.00312 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.46977 * 60.00536 * 13 11 10 38 38 H 1.08997 * 109.47328 * 179.97438 * 13 11 10 39 39 H 1.08995 * 109.47668 * 300.00495 * 13 11 10 40 40 H 1.09001 * 109.47459 * 64.99770 * 14 11 10 41 41 H 1.08996 * 109.47041 * 185.00000 * 14 11 10 42 42 H 1.09000 * 109.46806 * 94.04376 * 16 15 14 43 43 H 1.08997 * 109.47381 * 214.04596 * 16 15 14 44 44 H 1.09005 * 109.47288 * 334.04798 * 16 15 14 45 45 H 0.97003 * 120.00315 * 180.02562 * 20 19 17 46 46 H 1.07996 * 119.62172 * 180.31400 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2665 2.0827 1.1959 5 6 2.7278 3.3891 1.1476 6 6 2.9381 3.9841 -0.0822 7 6 3.4390 5.4040 -0.1467 8 6 4.6922 5.4572 -0.9819 9 8 5.1348 4.4421 -1.4764 10 7 5.3205 6.6330 -1.1801 11 6 6.5386 6.6847 -1.9924 12 1 6.4658 5.9596 -2.8030 13 6 7.7493 6.3525 -1.1181 14 6 6.7020 8.0889 -2.5775 15 7 5.4908 8.4540 -3.3166 16 6 5.3801 8.1387 -4.7430 17 6 4.4623 9.0900 -2.6742 18 1 4.6507 9.6345 -1.7607 19 6 3.1777 9.0351 -3.1971 20 7 2.8998 8.1971 -4.1733 21 14 1.8432 10.1504 -2.5154 22 1 2.2435 11.5689 -2.6960 23 1 0.5707 9.8988 -3.2384 24 1 1.6543 9.8695 -1.0694 25 7 2.7047 3.3240 -1.1995 26 6 2.2705 2.0787 -1.1916 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0934 1.5921 2.1423 33 1 2.9204 3.9350 2.0593 34 1 2.6753 6.0385 -0.5965 35 1 3.6583 5.7579 0.8606 36 1 4.9663 7.4448 -0.7848 37 1 7.6329 5.3521 -0.7012 38 1 8.6555 6.3906 -1.7226 39 1 7.8221 7.0776 -0.3075 40 1 6.8636 8.8027 -1.7697 41 1 7.5578 8.1040 -3.2523 42 1 4.8709 7.1827 -4.8652 43 1 4.8104 8.9206 -5.2449 44 1 6.3769 8.0779 -5.1801 45 1 2.0021 8.1589 -4.5390 46 1 2.0953 1.5685 -2.1272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:53 Heat of formation + Delta-G solvation = 8.780671 kcal Electronic energy + Delta-G solvation = -25437.515899 eV Core-core repulsion = 21941.495829 eV Total energy + Delta-G solvation = -3496.020070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.28489 -38.78678 -36.25114 -34.88344 -33.82405 -32.20452 -31.54312 -30.97488 -29.86188 -27.40965 -26.10648 -25.55293 -23.80354 -23.43034 -21.85087 -21.12089 -20.14648 -19.48058 -16.93754 -16.62146 -16.31165 -16.00900 -15.41235 -15.04437 -14.78944 -14.53650 -14.03783 -13.91901 -13.67525 -13.47848 -13.14098 -12.90685 -12.80425 -12.71023 -12.61132 -12.09636 -12.03399 -11.89746 -11.47374 -11.40617 -11.31278 -11.18053 -11.07443 -10.81530 -10.68405 -10.33710 -10.17380 -10.03584 -9.78495 -9.61443 -9.17974 -8.97091 -8.58386 -8.52795 -8.10703 -6.73309 -5.69389 -3.15486 1.24310 1.48367 3.34246 3.42363 3.43903 3.48003 3.83304 4.20071 4.46446 4.48697 4.72044 4.76294 4.93095 5.02345 5.19351 5.27057 5.34141 5.39492 5.50887 5.56192 5.62633 5.64473 5.70171 5.74948 5.79029 5.93705 5.97419 6.00532 6.06401 6.09478 6.23293 6.24572 6.32089 6.36495 6.51447 6.59653 6.80694 6.87124 6.97673 7.42648 7.45091 7.73892 7.85430 8.32607 8.40288 8.46255 9.13252 9.24546 9.88807 10.39274 11.34648 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.004081 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.964476 B = 6859.110788 C = 7889.921908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.078 4.078 5 C -0.170 4.170 6 C 0.152 3.848 7 C -0.096 4.096 8 C 0.525 3.475 9 O -0.546 6.546 10 N -0.691 5.691 11 C 0.121 3.879 12 H 0.075 0.925 13 C -0.158 4.158 14 C 0.142 3.858 15 N -0.598 5.598 16 C 0.165 3.835 17 C -0.258 4.258 18 H 0.066 0.934 19 C 0.008 3.992 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.283 1.283 25 N -0.444 5.444 26 C 0.108 3.892 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.402 0.598 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.028 0.972 43 H 0.044 0.956 44 H -0.006 1.006 45 H 0.253 0.747 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 -10.780 11.312 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.150 4.150 4 C -0.104 4.104 5 C -0.189 4.189 6 C 0.013 3.987 7 C -0.137 4.137 8 C 0.310 3.690 9 O -0.424 6.424 10 N -0.341 5.341 11 C 0.012 3.988 12 H 0.093 0.907 13 C -0.218 4.218 14 C 0.014 3.986 15 N -0.320 5.320 16 C 0.020 3.980 17 C -0.388 4.388 18 H 0.083 0.917 19 C -0.191 4.191 20 N -0.541 5.541 21 Si 0.727 3.273 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.210 1.210 25 N -0.151 5.151 26 C -0.051 4.051 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.237 0.763 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.013 0.987 45 H 0.063 0.937 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.136 -11.068 10.011 14.925 hybrid contribution -1.255 0.531 1.289 1.876 sum -1.120 -10.538 11.300 15.492 Atomic orbital electron populations 1.21760 0.94756 1.01608 1.02315 1.20426 0.96054 0.92118 1.02904 1.20871 1.02004 0.97664 0.94452 1.21317 0.96970 0.94226 0.97850 1.21895 1.02386 0.96021 0.98643 1.20660 0.94307 0.95263 0.88426 1.20620 0.98050 0.93286 1.01714 1.19907 0.84206 0.83881 0.80992 1.90642 1.66741 1.34444 1.50544 1.45657 1.27154 1.09333 1.51938 1.21752 0.82838 1.01333 0.92829 0.90710 1.22152 0.98351 1.01120 1.00140 1.21177 0.90350 0.91950 0.95121 1.43866 1.15102 1.67649 1.05382 1.20790 0.93949 1.00271 0.82996 1.19013 0.86664 1.24750 1.08376 0.91676 1.24991 0.96960 0.98160 0.99038 1.70066 1.19715 1.36084 1.28194 0.86479 0.81725 0.80781 0.78339 1.21175 1.21730 1.20975 1.67537 1.08626 1.08161 1.30798 1.22649 0.94600 0.90597 0.97217 0.92701 0.92380 0.92410 0.90793 0.91145 0.85330 0.85051 0.86731 0.88192 0.76255 0.93124 0.92459 0.93120 0.93454 0.93166 0.95389 0.93696 0.98705 0.93694 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.08 -0.70 6.09 -27.88 -0.17 -0.87 16 3 C -0.15 -1.85 5.15 -104.48 -0.54 -2.39 16 4 C -0.08 -0.93 9.86 -39.28 -0.39 -1.32 16 5 C -0.17 -2.28 9.71 -39.44 -0.38 -2.66 16 6 C 0.15 2.59 5.76 -82.59 -0.48 2.12 16 7 C -0.10 -1.62 6.10 -29.04 -0.18 -1.80 16 8 C 0.53 10.74 7.73 -10.99 -0.08 10.65 16 9 O -0.55 -12.98 15.00 5.56 0.08 -12.89 16 10 N -0.69 -13.52 4.49 -53.81 -0.24 -13.76 16 11 C 0.12 2.32 2.88 -67.93 -0.20 2.13 16 12 H 0.07 1.70 7.58 -51.93 -0.39 1.31 16 13 C -0.16 -2.49 9.48 37.15 0.35 -2.13 16 14 C 0.14 2.80 5.36 -4.04 -0.02 2.77 16 15 N -0.60 -14.44 2.82 -181.12 -0.51 -14.95 16 16 C 0.16 4.11 9.01 59.85 0.54 4.65 16 17 C -0.26 -6.58 8.02 -15.06 -0.12 -6.70 16 18 H 0.07 1.59 7.84 -52.49 -0.41 1.17 16 19 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 20 N -0.90 -25.74 10.57 55.49 0.59 -25.15 16 21 Si 0.90 20.97 29.57 -169.99 -5.03 15.95 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 N -0.44 -8.50 9.23 -9.47 -0.09 -8.58 16 26 C 0.11 1.67 10.86 -17.55 -0.19 1.48 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.63 8.09 -51.92 -0.42 0.21 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.37 7.95 -52.49 -0.42 0.95 16 34 H 0.11 2.05 8.14 -51.93 -0.42 1.62 16 35 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 36 H 0.40 7.60 7.40 -40.82 -0.30 7.30 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 41 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 42 H 0.03 0.78 7.44 -51.93 -0.39 0.39 16 43 H 0.04 1.19 7.16 -51.93 -0.37 0.82 16 44 H -0.01 -0.12 7.85 -51.93 -0.41 -0.53 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -33.06 378.62 -8.77 -41.83 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.70 Total: 6.65 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.58 Total: 5.20 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.25 Total: -62.44 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.06 -8.77 -41.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.608 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds