Wall clock time and date at job start Tue Mar 31 2020 08:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46995 * 2 1 4 4 C 1.38668 * 120.41765 * 90.00013 * 3 2 1 5 5 C 1.38631 * 118.41676 * 179.97438 * 4 3 2 6 6 C 1.38223 * 119.16457 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.62063 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47143 * 124.99541 * 7 6 5 9 9 O 1.21283 * 120.00509 * 0.02562 * 8 7 6 10 10 N 1.34786 * 119.99827 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99689 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47385 * 325.00076 * 11 10 8 13 13 C 1.52995 * 109.47086 * 85.00616 * 11 10 8 14 14 C 1.52997 * 109.46780 * 205.00269 * 11 10 8 15 15 N 1.46497 * 109.47327 * 55.00448 * 14 11 10 16 16 C 1.46502 * 119.99661 * 269.99724 * 15 14 11 17 17 C 1.36937 * 120.00363 * 89.99677 * 15 14 11 18 18 H 1.07998 * 119.99655 * 23.62245 * 17 15 14 19 19 C 1.38807 * 120.00257 * 203.61453 * 17 15 14 20 20 N 1.31626 * 119.99752 * 11.31645 * 19 17 15 21 21 Si 1.86799 * 120.00216 * 191.30957 * 19 17 15 22 22 H 1.48496 * 109.47189 * 90.00387 * 21 19 17 23 23 H 1.48504 * 109.47183 * 210.00694 * 21 19 17 24 24 H 1.48502 * 109.46754 * 330.00218 * 21 19 17 25 25 N 1.31857 * 120.76092 * 359.97438 * 6 5 4 26 26 C 1.31890 * 121.72889 * 359.70653 * 25 6 5 27 27 H 1.08998 * 109.47483 * 300.00364 * 1 2 3 28 28 H 1.09002 * 109.47024 * 60.00209 * 1 2 3 29 29 H 1.08993 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47040 * 239.99711 * 2 1 3 31 31 H 1.08998 * 109.46546 * 119.99651 * 2 1 3 32 32 H 1.08001 * 120.79505 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.41896 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46862 * 244.99350 * 7 6 5 35 35 H 1.08996 * 109.47428 * 4.99657 * 7 6 5 36 36 H 0.96997 * 120.00252 * 0.02562 * 10 8 7 37 37 H 1.09010 * 109.47027 * 299.99549 * 13 11 10 38 38 H 1.08998 * 109.47449 * 59.99500 * 13 11 10 39 39 H 1.08992 * 109.47387 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.47013 * 175.00771 * 14 11 10 41 41 H 1.09002 * 109.46993 * 295.00107 * 14 11 10 42 42 H 1.09005 * 109.46919 * 94.53580 * 16 15 14 43 43 H 1.08999 * 109.47302 * 214.53306 * 16 15 14 44 44 H 1.08997 * 109.47488 * 334.53669 * 16 15 14 45 45 H 0.96999 * 119.99416 * 179.97438 * 20 19 17 46 46 H 1.07993 * 119.62307 * 180.30943 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2664 2.0828 1.1958 5 6 2.7287 3.3888 1.1474 6 6 2.9390 3.9838 -0.0824 7 6 3.4408 5.4033 -0.1470 8 6 4.6938 5.4556 -0.9826 9 8 5.1356 4.4402 -1.4775 10 7 5.3230 6.6310 -1.1809 11 6 6.5414 6.6817 -1.9929 12 1 7.1195 5.7707 -1.8380 13 6 6.1647 6.8016 -3.4709 14 6 7.3791 7.8936 -1.5802 15 7 7.6391 7.8398 -0.1394 16 6 6.7074 8.4731 0.7971 17 6 8.7529 7.1975 0.3318 18 1 9.6131 7.0683 -0.3083 19 6 8.7764 6.7127 1.6323 20 7 7.6662 6.6675 2.3380 21 14 10.3835 6.1243 2.3808 22 1 11.0602 7.2604 3.0564 23 1 10.1054 5.0537 3.3717 24 1 11.2625 5.5908 1.3094 25 7 2.7056 3.3236 -1.1997 26 6 2.2714 2.0783 -1.1917 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0934 1.5923 2.1423 33 1 2.9213 3.9349 2.0591 34 1 2.6775 6.0384 -0.5966 35 1 3.6609 5.7571 0.8602 36 1 4.9695 7.4431 -0.7855 37 1 5.5678 5.9381 -3.7649 38 1 5.5866 7.7126 -3.6258 39 1 7.0711 6.8389 -4.0750 40 1 8.3254 7.8822 -2.1209 41 1 6.8361 8.8084 -1.8175 42 1 5.9922 7.7324 1.1548 43 1 7.2624 8.8800 1.6424 44 1 6.1745 9.2780 0.2911 45 1 7.6827 6.3284 3.2466 46 1 2.0962 1.5681 -2.1272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754327932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:56 Heat of formation + Delta-G solvation = 7.884496 kcal Electronic energy + Delta-G solvation = -25292.592844 eV Core-core repulsion = 21796.533913 eV Total energy + Delta-G solvation = -3496.058931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.32910 -38.87761 -36.30096 -34.92226 -33.87798 -32.24155 -31.56462 -30.95255 -30.00473 -27.47835 -26.13925 -25.55791 -23.84981 -23.46315 -21.86998 -21.12427 -20.19479 -19.63770 -16.84822 -16.78802 -16.42283 -16.08010 -15.42682 -15.10510 -14.86579 -14.40626 -14.09171 -13.93035 -13.66444 -13.59526 -13.22681 -13.06920 -12.89438 -12.69864 -12.50239 -12.15857 -12.07479 -11.92609 -11.53342 -11.42821 -11.36574 -11.11766 -11.00275 -10.81359 -10.74719 -10.50132 -10.16563 -9.92741 -9.83065 -9.63014 -9.27892 -9.06947 -8.62922 -8.54804 -8.21907 -6.71816 -5.71488 -3.16828 1.20976 1.45510 3.39915 3.40642 3.46591 3.47707 3.75213 4.10033 4.38947 4.52701 4.69739 4.73840 4.92111 4.99855 5.16190 5.25497 5.31582 5.37126 5.47507 5.52278 5.56869 5.65523 5.68203 5.71151 5.77661 5.87211 5.91841 5.96403 6.00489 6.08627 6.17166 6.25963 6.32767 6.34693 6.54450 6.60959 6.69361 6.83523 6.97549 7.29964 7.36596 7.67116 7.82417 8.21585 8.29277 8.41498 9.02158 9.25351 9.87575 10.36000 11.33844 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.003733 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.207143 B = 7499.464083 C = 8571.090960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.076 4.076 5 C -0.161 4.161 6 C 0.149 3.851 7 C -0.094 4.094 8 C 0.525 3.475 9 O -0.536 6.536 10 N -0.702 5.702 11 C 0.120 3.880 12 H 0.083 0.917 13 C -0.158 4.158 14 C 0.143 3.857 15 N -0.597 5.597 16 C 0.162 3.838 17 C -0.253 4.253 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.905 5.905 21 Si 0.903 3.097 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.280 1.280 25 N -0.453 5.453 26 C 0.103 3.897 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.042 0.958 44 H -0.005 1.005 45 H 0.250 0.750 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.820 -5.400 -4.165 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.181 4.181 6 C 0.011 3.989 7 C -0.135 4.135 8 C 0.310 3.690 9 O -0.413 6.413 10 N -0.352 5.352 11 C 0.013 3.987 12 H 0.101 0.899 13 C -0.218 4.218 14 C 0.014 3.986 15 N -0.320 5.320 16 C 0.017 3.983 17 C -0.383 4.383 18 H 0.085 0.915 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.734 3.266 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.205 1.205 25 N -0.161 5.161 26 C -0.055 4.055 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.227 0.773 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.013 0.987 45 H 0.060 0.940 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.349 -5.737 -5.133 16.283 hybrid contribution 0.596 -0.491 1.660 1.830 sum -13.753 -6.228 -3.474 15.492 Atomic orbital electron populations 1.21753 0.94768 1.01622 1.02192 1.20435 0.96005 0.92136 1.03040 1.20857 1.01851 0.97599 0.94438 1.21370 0.96653 0.94204 0.97974 1.21974 1.01083 0.96022 0.98977 1.20587 0.94502 0.95324 0.88529 1.20622 0.96944 0.93144 1.02788 1.19932 0.84721 0.83755 0.80599 1.90671 1.66480 1.33922 1.50180 1.45733 1.27375 1.09283 1.52812 1.21779 0.85906 1.03029 0.88013 0.89914 1.22147 1.01207 1.01153 0.97252 1.21197 0.96862 0.93695 0.86799 1.43882 1.25999 1.62604 0.99485 1.20840 0.92770 0.92826 0.91829 1.19181 0.91528 1.30594 0.96985 0.91502 1.25003 0.96771 0.99115 0.98482 1.70032 1.24669 1.50169 1.10184 0.86268 0.83331 0.78041 0.78976 1.21596 1.21834 1.20538 1.67443 1.09277 1.08502 1.30871 1.22561 0.95100 0.90651 0.97158 0.92659 0.92522 0.92401 0.90805 0.91008 0.85175 0.84665 0.87796 0.87180 0.77309 0.92891 0.93307 0.92344 0.92458 0.94067 0.95066 0.93927 0.98690 0.93968 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.74 16 2 C -0.08 -0.70 6.09 -27.88 -0.17 -0.87 16 3 C -0.15 -1.78 5.15 -104.48 -0.54 -2.32 16 4 C -0.08 -0.95 9.86 -39.28 -0.39 -1.34 16 5 C -0.16 -2.29 9.71 -39.44 -0.38 -2.67 16 6 C 0.15 2.44 5.76 -82.59 -0.48 1.96 16 7 C -0.09 -1.47 6.10 -29.04 -0.18 -1.65 16 8 C 0.53 10.37 7.73 -10.98 -0.08 10.28 16 9 O -0.54 -12.72 15.00 5.55 0.08 -12.64 16 10 N -0.70 -13.04 4.41 -53.81 -0.24 -13.27 16 11 C 0.12 2.33 2.88 -67.93 -0.20 2.14 16 12 H 0.08 1.96 7.58 -51.93 -0.39 1.57 16 13 C -0.16 -2.54 9.48 37.16 0.35 -2.18 16 14 C 0.14 2.81 5.33 -4.04 -0.02 2.79 16 15 N -0.60 -14.38 2.78 -181.12 -0.50 -14.89 16 16 C 0.16 3.71 7.61 59.85 0.46 4.16 16 17 C -0.25 -6.90 9.66 -15.06 -0.15 -7.04 16 18 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 19 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 20 N -0.91 -25.80 10.66 55.49 0.59 -25.21 16 21 Si 0.90 22.19 29.57 -169.99 -5.03 17.17 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 N -0.45 -7.79 9.22 -9.48 -0.09 -7.88 16 26 C 0.10 1.47 10.86 -17.55 -0.19 1.28 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 1.68 7.95 -52.49 -0.42 1.27 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.11 1.59 7.87 -51.93 -0.41 1.18 16 36 H 0.39 6.57 7.17 -40.82 -0.29 6.28 16 37 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 41 H 0.04 0.71 7.86 -51.93 -0.41 0.31 16 42 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 43 H 0.04 1.08 7.30 -51.93 -0.38 0.70 16 44 H -0.01 -0.10 7.84 -51.93 -0.41 -0.51 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -33.77 378.17 -8.84 -42.61 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.67 Total: 4.56 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.68 Total: 3.84 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.24 Total: -61.25 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.77 -8.84 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754327932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.497 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds