Wall clock time and date at job start Tue Mar 31 2020 09:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46962 * 2 1 4 4 H 1.09002 * 109.47219 * 304.99564 * 3 2 1 5 5 C 1.53009 * 109.46780 * 184.99743 * 3 2 1 6 6 O 1.42900 * 109.47546 * 65.00081 * 3 2 1 7 7 C 1.35547 * 116.99687 * 209.99926 * 6 3 2 8 8 C 1.38919 * 120.46200 * 180.25297 * 7 6 3 9 9 C 1.39234 * 118.28715 * 180.25857 * 8 7 6 10 10 N 1.38611 * 120.49788 * 179.76380 * 9 8 7 11 11 C 1.46499 * 120.00310 * 359.44565 * 10 9 8 12 12 C 1.52994 * 109.47429 * 179.54405 * 11 10 9 13 13 C 1.50701 * 115.55025 * 39.67642 * 12 11 10 14 14 H 1.08005 * 119.99777 * 264.66162 * 13 12 11 15 15 C 1.37875 * 119.99936 * 84.66229 * 13 12 11 16 16 N 1.31516 * 120.00166 * 352.58781 * 15 13 12 17 17 Si 1.86800 * 119.99878 * 172.59602 * 15 13 12 18 18 H 1.48503 * 109.47378 * 89.99688 * 17 15 13 19 19 H 1.48500 * 109.47114 * 209.99857 * 17 15 13 20 20 H 1.48504 * 109.47216 * 329.99494 * 17 15 13 21 21 C 1.52998 * 117.49900 * 253.97092 * 12 11 10 22 22 C 1.53003 * 117.49868 * 185.34413 * 12 11 10 23 23 N 1.33146 * 119.00491 * 359.48945 * 9 8 7 24 24 C 1.31723 * 120.83788 * 0.24936 * 23 9 8 25 25 C 1.50696 * 119.06055 * 180.02562 * 24 23 9 26 26 N 1.31781 * 121.88967 * 0.02562 * 24 23 9 27 27 H 1.09000 * 109.47056 * 60.00511 * 1 2 3 28 28 H 1.09005 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47644 * 300.00370 * 1 2 3 30 30 H 1.08998 * 109.47122 * 239.99630 * 2 1 3 31 31 H 1.09000 * 109.46691 * 120.00176 * 2 1 3 32 32 H 1.09000 * 109.46895 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47065 * 299.99435 * 5 3 2 34 34 H 1.09004 * 109.47172 * 60.00102 * 5 3 2 35 35 H 1.08001 * 120.85815 * 359.97438 * 8 7 6 36 36 H 0.97001 * 119.99633 * 179.71835 * 10 9 8 37 37 H 1.09004 * 109.46770 * 299.54265 * 11 10 9 38 38 H 1.08998 * 109.46752 * 59.53985 * 11 10 9 39 39 H 0.96998 * 120.00061 * 185.02218 * 16 15 13 40 40 H 1.09003 * 117.49830 * 359.97438 * 21 12 11 41 41 H 1.09000 * 117.50173 * 145.01864 * 21 12 11 42 42 H 1.08996 * 117.49716 * 214.97527 * 22 12 11 43 43 H 1.09001 * 117.49817 * 359.97438 * 22 12 11 44 44 H 1.09000 * 109.47182 * 89.99734 * 25 24 23 45 45 H 1.08998 * 109.47366 * 210.00474 * 25 24 23 46 46 H 1.09007 * 109.46870 * 330.00198 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 8 1.6619 2.0814 1.2210 7 6 1.4508 3.4196 1.1755 8 6 1.0857 4.1143 2.3218 9 6 0.8750 5.4870 2.2223 10 7 0.5046 6.2244 3.3360 11 6 0.3203 5.5581 4.6276 12 6 -0.0731 6.5927 5.6838 13 6 -1.0337 7.6586 5.2233 14 1 -0.6589 8.6117 4.8804 15 6 -2.3911 7.4171 5.2399 16 7 -2.8414 6.2130 5.5171 17 14 -3.5904 8.8003 4.8686 18 1 -3.8663 8.8380 3.4099 19 1 -4.8580 8.5677 5.6063 20 1 -3.0003 10.0948 5.2944 21 6 0.9887 6.9935 6.7099 22 6 -0.1901 6.1142 7.1323 23 7 1.0398 6.0817 1.0425 24 6 1.3922 5.3876 -0.0202 25 6 1.5682 6.1015 -1.3355 26 7 1.5952 4.0866 0.0340 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 3.9281 2.4719 -0.1261 33 1 3.9994 0.9053 0.7162 34 1 3.8533 0.9569 -1.0571 35 1 0.9640 3.6022 3.2648 36 1 0.3636 7.1811 3.2593 37 1 -0.4674 4.8096 4.5411 38 1 1.2511 5.0736 4.9225 39 1 -3.7911 6.0248 5.4577 40 1 1.9673 6.5197 6.6328 41 1 0.9926 8.0284 7.0521 42 1 -0.9616 6.5707 7.7523 43 1 0.0127 5.0621 7.3327 44 1 2.6007 6.4374 -1.4313 45 1 1.3300 5.4211 -2.1530 46 1 0.9009 6.9627 -1.3736 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858525607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:23 Heat of formation + Delta-G solvation = 18.742628 kcal Electronic energy + Delta-G solvation = -25198.755179 eV Core-core repulsion = 21703.167091 eV Total energy + Delta-G solvation = -3495.588087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.73696 -38.77647 -37.25157 -34.99588 -34.43001 -32.07829 -31.81306 -31.13869 -30.00858 -27.98907 -26.18390 -25.29304 -24.19793 -22.80655 -21.92238 -21.22405 -20.69313 -19.46254 -18.13657 -17.58632 -16.12352 -15.73413 -15.28498 -14.99321 -14.78578 -14.64003 -14.42597 -14.27031 -13.91102 -13.57816 -13.37492 -13.19060 -13.06290 -12.92140 -12.67736 -12.33258 -12.13325 -11.91147 -11.82685 -11.65465 -11.21885 -11.08615 -11.03637 -10.91765 -10.78250 -10.57229 -10.36714 -10.13658 -10.07860 -9.68336 -9.01940 -8.87086 -8.72952 -8.56648 -8.25678 -7.40638 -6.16757 -4.25614 1.56307 1.94416 3.07448 3.23095 3.30846 3.33390 3.76526 4.30005 4.30699 4.32436 4.64557 4.87022 4.89713 5.03107 5.12951 5.20820 5.28641 5.40173 5.47695 5.51922 5.60774 5.68527 5.71144 5.80482 5.81940 5.85351 5.89249 5.90149 6.03509 6.09556 6.13861 6.17452 6.21604 6.32094 6.38986 6.53405 6.64534 6.79257 6.97479 7.13831 7.25309 7.37183 7.57523 7.73681 7.92727 8.24393 8.36744 8.76286 8.80018 9.42768 10.90893 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.003628 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.528733 B = 7716.171054 C = 8071.898954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.091 0.909 5 C -0.167 4.167 6 O -0.296 6.296 7 C 0.387 3.613 8 C -0.329 4.329 9 C 0.466 3.534 10 N -0.664 5.664 11 C 0.163 3.837 12 C 0.029 3.971 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.079 3.921 16 N -0.871 5.871 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.209 4.209 22 C -0.150 4.150 23 N -0.600 5.600 24 C 0.387 3.613 25 C -0.080 4.080 26 N -0.627 5.627 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.141 0.859 36 H 0.416 0.584 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.002 -8.592 -10.896 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.028 3.972 4 H 0.109 0.891 5 C -0.225 4.225 6 O -0.202 6.202 7 C 0.205 3.795 8 C -0.358 4.358 9 C 0.222 3.778 10 N -0.291 5.291 11 C 0.039 3.961 12 C 0.028 3.972 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.126 4.126 16 N -0.507 5.507 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.246 4.246 22 C -0.188 4.188 23 N -0.330 5.330 24 C 0.117 3.883 25 C -0.138 4.138 26 N -0.364 5.364 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.159 0.841 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.864 -8.570 -11.110 16.597 hybrid contribution -0.929 0.493 0.565 1.194 sum 7.936 -8.077 -10.544 15.473 Atomic orbital electron populations 1.21759 0.95188 1.01642 1.02558 1.21678 0.96841 0.94440 1.02838 1.22383 0.95057 0.92946 0.86789 0.89122 1.22200 0.95270 1.02902 1.02086 1.86262 1.81994 1.16320 1.35635 1.19499 0.86868 0.83948 0.89142 1.20883 1.21059 0.93968 0.99932 1.18306 0.85282 0.87472 0.86787 1.44851 1.67495 1.11427 1.05358 1.21074 0.97816 0.95527 0.81642 1.18944 0.95559 0.95899 0.86784 1.20294 0.89775 0.98805 1.45461 0.92008 1.24965 0.98253 0.95438 0.93947 1.69960 1.14537 1.19621 1.46534 0.86631 0.80618 0.82643 0.78453 1.20505 1.21115 1.19671 1.23098 0.92877 0.99556 1.09104 1.22515 0.98890 0.96672 1.00736 1.67808 1.25893 1.40601 0.98690 1.22403 0.86897 0.85197 0.93818 1.20487 1.03206 0.99807 0.90329 1.67750 1.30180 1.10944 1.27519 0.92805 0.92599 0.91950 0.90262 0.91054 0.91878 0.92181 0.91359 0.84114 0.74505 0.91336 0.94337 0.92781 0.91535 0.90250 0.89796 0.91623 0.90050 0.90160 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 37.16 0.36 -1.25 16 2 C -0.12 -1.18 5.64 -26.73 -0.15 -1.34 16 3 C 0.08 1.03 2.50 -26.73 -0.07 0.96 16 4 H 0.09 1.18 7.01 -51.93 -0.36 0.81 16 5 C -0.17 -1.77 9.53 37.16 0.35 -1.41 16 6 O -0.30 -4.62 9.31 -18.33 -0.17 -4.79 16 7 C 0.39 6.79 7.48 -16.79 -0.13 6.66 16 8 C -0.33 -6.21 9.35 -38.96 -0.36 -6.57 16 9 C 0.47 9.30 7.70 -154.72 -1.19 8.11 16 10 N -0.66 -13.78 5.51 -60.32 -0.33 -14.11 16 11 C 0.16 3.46 5.00 -4.05 -0.02 3.44 16 12 C 0.03 0.66 1.71 -155.66 -0.27 0.39 16 13 C -0.51 -12.74 7.41 -34.44 -0.26 -13.00 16 14 H 0.06 1.56 7.83 -52.48 -0.41 1.15 16 15 C 0.08 2.05 5.38 -17.82 -0.10 1.96 16 16 N -0.87 -23.51 12.98 55.43 0.72 -22.79 16 17 Si 0.89 20.43 29.55 -169.99 -5.02 15.41 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.21 -4.26 9.88 -26.73 -0.26 -4.53 16 22 C -0.15 -3.29 9.52 -26.72 -0.25 -3.54 16 23 N -0.60 -11.44 10.36 -10.02 -0.10 -11.55 16 24 C 0.39 6.46 7.64 -157.27 -1.20 5.26 16 25 C -0.08 -0.95 10.32 36.00 0.37 -0.58 16 26 N -0.63 -10.46 8.70 -10.86 -0.09 -10.55 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.14 2.59 6.85 -52.49 -0.36 2.23 16 36 H 0.42 8.92 7.54 -40.82 -0.31 8.62 16 37 H 0.07 1.59 8.01 -51.93 -0.42 1.17 16 38 H 0.04 0.75 7.73 -51.93 -0.40 0.35 16 39 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 40 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 LS Contribution 381.66 15.07 5.75 5.75 Total: -1.00 -27.59 381.66 -10.14 -37.73 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.72 Total: 10.34 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.17 Total: -5.43 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.19 Total: -59.00 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.17 Total: -4.79 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.59 -10.14 -37.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858525607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.469 kcal (2) G-P(sol) polarization free energy of solvation -27.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds