Wall clock time and date at job start Tue Mar 31 2020 10:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 N 1.46493 * 109.47417 * 120.00388 * 2 1 3 5 5 C 1.35532 * 125.67815 * 305.15910 * 4 2 1 6 6 C 1.35449 * 108.87374 * 180.13464 * 5 4 2 7 7 C 1.39834 * 107.86449 * 359.60098 * 6 5 4 8 8 C 1.37654 * 125.67946 * 124.84590 * 4 2 1 9 9 C 1.46677 * 126.23119 * 0.02562 * 8 4 2 10 10 O 1.21689 * 119.99840 * 356.14082 * 9 8 4 11 11 N 1.34774 * 119.99921 * 176.13306 * 9 8 4 12 12 C 1.46497 * 119.99947 * 185.01265 * 11 9 8 13 13 H 1.09001 * 109.49831 * 35.00593 * 12 11 9 14 14 C 1.53040 * 109.49652 * 155.07058 * 12 11 9 15 15 C 1.53044 * 109.54043 * 181.31750 * 14 12 11 16 16 C 1.53191 * 109.30944 * 298.63349 * 15 14 12 17 17 N 1.46924 * 108.77744 * 54.63330 * 16 15 14 18 18 C 1.36941 * 120.63538 * 126.39070 * 17 16 15 19 19 H 1.08001 * 120.00319 * 217.60970 * 18 17 16 20 20 C 1.38816 * 119.99634 * 37.59926 * 18 17 16 21 21 N 1.31621 * 120.00206 * 10.62450 * 20 18 17 22 22 Si 1.86803 * 119.99909 * 190.62096 * 20 18 17 23 23 H 1.48496 * 109.46978 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46756 * 120.00346 * 22 20 18 25 25 H 1.48496 * 109.46984 * 240.00311 * 22 20 18 26 26 C 1.46931 * 118.76564 * 306.41108 * 17 16 15 27 27 H 1.08994 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46681 * 299.99603 * 1 2 3 29 29 H 1.09001 * 109.47460 * 59.99395 * 1 2 3 30 30 H 1.08999 * 109.46681 * 240.00397 * 2 1 3 31 31 H 1.09004 * 109.47104 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47527 * 300.00564 * 3 2 1 33 33 H 1.08999 * 109.47099 * 60.00653 * 3 2 1 34 34 H 1.08005 * 125.56768 * 0.02562 * 5 4 2 35 35 H 1.08005 * 126.06889 * 179.86579 * 6 5 4 36 36 H 1.08004 * 126.45772 * 180.24234 * 7 6 5 37 37 H 0.97005 * 119.99923 * 5.01792 * 11 9 8 38 38 H 1.08996 * 109.46003 * 301.33389 * 14 12 11 39 39 H 1.09007 * 109.46330 * 61.29708 * 14 12 11 40 40 H 1.09002 * 109.49484 * 58.57957 * 15 14 12 41 41 H 1.08998 * 109.49784 * 178.65130 * 15 14 12 42 42 H 1.08999 * 109.58864 * 174.41815 * 16 15 14 43 43 H 1.08998 * 109.58883 * 294.70374 * 16 15 14 44 44 H 0.96999 * 120.00409 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.56662 * 293.78252 * 26 17 16 46 46 H 1.08997 * 109.61847 * 173.35569 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.6842 -0.3895 2.4745 6 6 2.3314 -1.2386 3.3081 7 6 3.0935 -2.1110 2.5249 8 6 2.8884 -1.7573 1.2082 9 6 3.4881 -2.4004 0.0342 10 8 3.1730 -2.0396 -1.0845 11 7 4.3880 -3.3907 0.1944 12 6 5.0685 -3.9580 -0.9723 13 1 5.2439 -3.1733 -1.7083 14 6 6.4069 -4.5611 -0.5399 15 6 7.1335 -5.1248 -1.7632 16 6 6.2835 -6.2342 -2.3906 17 7 4.9451 -5.6999 -2.6767 18 6 4.4067 -5.8017 -3.9318 19 1 3.8132 -4.9931 -4.3321 20 6 4.6241 -6.9443 -4.6895 21 7 5.1638 -8.0090 -4.1350 22 14 4.1506 -6.9709 -6.4964 23 1 3.5676 -5.6585 -6.8746 24 1 5.3579 -7.2318 -7.3206 25 1 3.1503 -8.0432 -6.7302 26 6 4.1948 -5.0536 -1.5913 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.0129 0.3998 2.7791 35 1 2.2668 -1.2438 4.3862 36 1 3.7239 -2.9112 2.8838 37 1 4.5852 -3.7280 1.0824 38 1 7.0208 -3.7884 -0.0771 39 1 6.2294 -5.3620 0.1780 40 1 7.2893 -4.3296 -2.4922 41 1 8.0971 -5.5327 -1.4581 42 1 6.7482 -6.5708 -3.3173 43 1 6.2045 -7.0708 -1.6965 44 1 5.3154 -8.8076 -4.6644 45 1 3.9428 -5.7931 -0.8311 46 1 3.2820 -4.6112 -1.9902 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009540284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:53 Heat of formation + Delta-G solvation = 22.199809 kcal Electronic energy + Delta-G solvation = -25619.379346 eV Core-core repulsion = 22123.941174 eV Total energy + Delta-G solvation = -3495.438173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50543 -39.15634 -37.16699 -35.59863 -34.19815 -32.42990 -30.40527 -29.92525 -29.85474 -27.98626 -27.53657 -25.23108 -23.39524 -22.38994 -22.07332 -21.38758 -20.15322 -19.71855 -18.85262 -17.59217 -16.69896 -15.78632 -15.46517 -15.30770 -14.84725 -14.67234 -14.37950 -14.07745 -13.90666 -13.76508 -13.39546 -13.07708 -12.84853 -12.71786 -12.46713 -12.41817 -12.34451 -12.33988 -12.17334 -11.79036 -11.51991 -11.23541 -11.02933 -10.86967 -10.79772 -10.27656 -10.18146 -9.92973 -9.89385 -9.62784 -9.46691 -8.80150 -8.79865 -8.43208 -8.19371 -6.49601 -5.76723 -3.29900 1.54774 2.62907 2.72437 3.38941 3.46269 3.49196 3.53812 3.56381 4.47368 4.52344 4.73950 4.83309 4.92261 5.00505 5.22392 5.23897 5.31243 5.33577 5.42612 5.43414 5.48990 5.56701 5.64460 5.68680 5.75317 5.81422 5.89500 6.00966 6.10292 6.14564 6.22060 6.28043 6.55334 6.63188 6.68990 6.72086 6.78017 6.90221 7.00402 7.06529 7.21102 7.35265 7.62262 7.79367 7.87291 8.44800 8.56214 9.26406 9.84873 10.46968 11.31518 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.003570 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.641530 B = 7841.136033 C = 8817.257439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 C -0.158 4.158 4 N -0.400 5.400 5 C 0.011 3.989 6 C -0.210 4.210 7 C -0.147 4.147 8 C -0.043 4.043 9 C 0.584 3.416 10 O -0.546 6.546 11 N -0.709 5.709 12 C 0.129 3.871 13 H 0.085 0.915 14 C -0.115 4.115 15 C -0.139 4.139 16 C 0.172 3.828 17 N -0.586 5.586 18 C -0.256 4.256 19 H 0.062 0.938 20 C 0.011 3.989 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.142 3.858 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.397 0.603 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.021 0.979 44 H 0.253 0.747 45 H 0.017 0.983 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 15.344 14.628 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 C -0.215 4.215 4 N -0.073 5.073 5 C -0.125 4.125 6 C -0.234 4.234 7 C -0.173 4.173 8 C -0.157 4.157 9 C 0.372 3.628 10 O -0.425 6.425 11 N -0.358 5.358 12 C 0.024 3.976 13 H 0.103 0.897 14 C -0.153 4.153 15 C -0.179 4.179 16 C 0.047 3.953 17 N -0.309 5.309 18 C -0.386 4.386 19 H 0.080 0.920 20 C -0.188 4.188 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.015 3.985 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.231 0.769 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.148 15.608 13.360 20.960 hybrid contribution -0.179 -0.279 -0.278 0.433 sum -4.327 15.329 13.081 20.611 Atomic orbital electron populations 1.22133 0.93484 1.03207 1.02804 1.22008 0.95318 0.94196 0.88414 1.22134 1.02192 0.94485 1.02729 1.44193 1.32935 1.23706 1.06438 1.21844 1.04497 1.03298 0.82826 1.20759 1.03760 0.99796 0.99095 1.21319 1.03302 1.01824 0.90840 1.20208 1.03751 0.96846 0.94933 1.17004 0.79136 0.79720 0.86988 1.90737 1.61492 1.64655 1.25625 1.45812 1.42135 1.36736 1.11153 1.21773 0.92435 0.97195 0.86180 0.89704 1.21677 0.95177 0.99469 0.98960 1.22183 0.98388 1.00940 0.96415 1.20728 0.84491 0.91107 0.99013 1.43884 1.13267 1.67527 1.06220 1.19177 1.30246 0.98585 0.90614 0.92007 1.25305 0.99831 0.94708 0.98975 1.70001 1.47197 1.02373 1.34833 0.86230 0.77862 0.77646 0.85114 1.20067 1.21502 1.21572 1.21221 0.94081 0.92092 0.91124 0.91647 0.92188 0.90505 0.84784 0.91859 0.90574 0.92241 0.82068 0.84335 0.84066 0.76889 0.93024 0.92111 0.92453 0.92705 0.90499 0.96076 0.93672 0.96468 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.16 37.16 0.34 -1.12 16 2 C 0.10 1.16 3.48 -67.93 -0.24 0.93 16 3 C -0.16 -1.44 9.30 37.16 0.35 -1.10 16 4 N -0.40 -4.96 2.64 -105.81 -0.28 -5.24 16 5 C 0.01 0.11 10.33 -16.91 -0.17 -0.06 16 6 C -0.21 -2.19 10.81 -39.98 -0.43 -2.62 16 7 C -0.15 -1.72 10.35 -39.12 -0.41 -2.13 16 8 C -0.04 -0.61 6.89 -81.98 -0.56 -1.18 16 9 C 0.58 9.72 7.74 -12.85 -0.10 9.62 16 10 O -0.55 -10.85 14.08 5.20 0.07 -10.78 16 11 N -0.71 -10.84 5.06 -55.00 -0.28 -11.12 16 12 C 0.13 2.37 2.57 -67.81 -0.17 2.19 16 13 H 0.08 1.76 7.66 -51.93 -0.40 1.36 16 14 C -0.11 -1.86 5.35 -26.69 -0.14 -2.01 16 15 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 16 C 0.17 4.08 5.23 -3.71 -0.02 4.06 16 17 N -0.59 -15.10 2.94 -172.32 -0.51 -15.61 16 18 C -0.26 -7.29 9.50 -15.06 -0.14 -7.43 16 19 H 0.06 1.78 7.85 -52.49 -0.41 1.37 16 20 C 0.01 0.32 5.01 -17.43 -0.09 0.23 16 21 N -0.90 -26.42 11.54 55.49 0.64 -25.78 16 22 Si 0.90 22.12 29.57 -169.99 -5.03 17.09 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 C 0.14 3.19 6.09 -3.71 -0.02 3.17 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.45 7.70 -51.93 -0.40 0.05 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.13 1.96 5.33 -51.93 -0.28 1.68 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.46 8.02 -51.93 -0.42 0.04 16 34 H 0.16 1.17 7.90 -52.48 -0.41 0.76 16 35 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.14 1.35 7.44 -52.48 -0.39 0.96 16 37 H 0.40 4.87 7.50 -40.82 -0.31 4.56 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 2.02 6.61 -51.93 -0.34 1.68 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 1.43 7.93 -51.93 -0.41 1.02 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -32.46 366.78 -9.38 -41.84 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.55 Total: 4.28 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.98 Total: -0.20 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.42 Total: -57.76 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.46 -9.38 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009540284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.038 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds