Wall clock time and date at job start Tue Mar 31 2020 10:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 N 1.46493 * 109.47417 * 120.00388 * 2 1 3 5 5 C 1.35532 * 125.67815 * 305.15910 * 4 2 1 6 6 C 1.35449 * 108.87374 * 180.13464 * 5 4 2 7 7 C 1.39834 * 107.86449 * 359.60098 * 6 5 4 8 8 C 1.37654 * 125.67946 * 124.84590 * 4 2 1 9 9 C 1.46677 * 126.23119 * 0.02562 * 8 4 2 10 10 O 1.21689 * 119.99840 * 356.14082 * 9 8 4 11 11 N 1.34774 * 119.99921 * 176.13306 * 9 8 4 12 12 C 1.46497 * 119.99947 * 185.01265 * 11 9 8 13 13 H 1.09001 * 109.49831 * 35.00593 * 12 11 9 14 14 C 1.53040 * 109.49652 * 155.07058 * 12 11 9 15 15 C 1.53044 * 109.54043 * 181.31750 * 14 12 11 16 16 C 1.53191 * 109.30944 * 298.63349 * 15 14 12 17 17 N 1.46924 * 108.77744 * 54.63330 * 16 15 14 18 18 C 1.36941 * 120.63538 * 126.39070 * 17 16 15 19 19 H 1.08001 * 120.00319 * 217.60970 * 18 17 16 20 20 C 1.38816 * 119.99634 * 37.59926 * 18 17 16 21 21 N 1.31621 * 120.00206 * 10.62450 * 20 18 17 22 22 Si 1.86803 * 119.99909 * 190.62096 * 20 18 17 23 23 H 1.48496 * 109.46978 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46756 * 120.00346 * 22 20 18 25 25 H 1.48496 * 109.46984 * 240.00311 * 22 20 18 26 26 C 1.46931 * 118.76564 * 306.41108 * 17 16 15 27 27 H 1.08994 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46681 * 299.99603 * 1 2 3 29 29 H 1.09001 * 109.47460 * 59.99395 * 1 2 3 30 30 H 1.08999 * 109.46681 * 240.00397 * 2 1 3 31 31 H 1.09004 * 109.47104 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47527 * 300.00564 * 3 2 1 33 33 H 1.08999 * 109.47099 * 60.00653 * 3 2 1 34 34 H 1.08005 * 125.56768 * 0.02562 * 5 4 2 35 35 H 1.08005 * 126.06889 * 179.86579 * 6 5 4 36 36 H 1.08004 * 126.45772 * 180.24234 * 7 6 5 37 37 H 0.97005 * 119.99923 * 5.01792 * 11 9 8 38 38 H 1.08996 * 109.46003 * 301.33389 * 14 12 11 39 39 H 1.09007 * 109.46330 * 61.29708 * 14 12 11 40 40 H 1.09002 * 109.49484 * 58.57957 * 15 14 12 41 41 H 1.08998 * 109.49784 * 178.65130 * 15 14 12 42 42 H 1.08999 * 109.58864 * 174.41815 * 16 15 14 43 43 H 1.08998 * 109.58883 * 294.70374 * 16 15 14 44 44 H 0.96999 * 120.00409 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.56662 * 293.78252 * 26 17 16 46 46 H 1.08997 * 109.61847 * 173.35569 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 1.6842 -0.3895 2.4745 6 6 2.3314 -1.2386 3.3081 7 6 3.0935 -2.1110 2.5249 8 6 2.8884 -1.7573 1.2082 9 6 3.4881 -2.4004 0.0342 10 8 3.1730 -2.0396 -1.0845 11 7 4.3880 -3.3907 0.1944 12 6 5.0685 -3.9580 -0.9723 13 1 5.2439 -3.1733 -1.7083 14 6 6.4069 -4.5611 -0.5399 15 6 7.1335 -5.1248 -1.7632 16 6 6.2835 -6.2342 -2.3906 17 7 4.9451 -5.6999 -2.6767 18 6 4.4067 -5.8017 -3.9318 19 1 3.8132 -4.9931 -4.3321 20 6 4.6241 -6.9443 -4.6895 21 7 5.1638 -8.0090 -4.1350 22 14 4.1506 -6.9709 -6.4964 23 1 3.5676 -5.6585 -6.8746 24 1 5.3579 -7.2318 -7.3206 25 1 3.1503 -8.0432 -6.7302 26 6 4.1948 -5.0536 -1.5913 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.0129 0.3998 2.7791 35 1 2.2668 -1.2438 4.3862 36 1 3.7239 -2.9112 2.8838 37 1 4.5852 -3.7280 1.0824 38 1 7.0208 -3.7884 -0.0771 39 1 6.2294 -5.3620 0.1780 40 1 7.2893 -4.3296 -2.4922 41 1 8.0971 -5.5327 -1.4581 42 1 6.7482 -6.5708 -3.3173 43 1 6.2045 -7.0708 -1.6965 44 1 5.3154 -8.8076 -4.6644 45 1 3.9428 -5.7931 -0.8311 46 1 3.2820 -4.6112 -1.9902 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009540284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:50 Heat of formation + Delta-G solvation = 2.321722 kcal Electronic energy + Delta-G solvation = -25620.241325 eV Core-core repulsion = 22123.941174 eV Total energy + Delta-G solvation = -3496.300151 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.43296 -40.52031 -38.79801 -36.50061 -35.79967 -34.18481 -32.32196 -31.21886 -30.73730 -29.28818 -28.26188 -27.25772 -24.64766 -23.88989 -23.37683 -22.69893 -21.27335 -21.16942 -20.07061 -18.71304 -18.57155 -17.18706 -16.89771 -16.51202 -16.37059 -15.81040 -15.69443 -15.50014 -15.13380 -15.04715 -14.84887 -14.67542 -14.24270 -14.03627 -13.65367 -13.56749 -13.42231 -13.18401 -13.09943 -13.01331 -12.96767 -12.80864 -12.59292 -12.32355 -12.19517 -12.07890 -12.02192 -11.71664 -11.56710 -11.33644 -10.85247 -10.64660 -10.20411 -9.65325 -9.13167 -8.57839 -7.92847 -5.50995 0.52300 1.41550 1.42452 1.54483 1.68460 1.88478 2.33005 2.41776 2.49141 3.22005 3.66051 3.67081 3.79239 3.93508 3.95245 4.09408 4.15803 4.19490 4.24257 4.44963 4.46120 4.49101 4.56198 4.58771 4.68115 4.73446 4.79810 4.90902 4.93482 5.01966 5.03470 5.11876 5.13418 5.15790 5.24527 5.26297 5.34942 5.45047 5.51828 5.61326 5.72213 5.89311 6.08876 6.39333 6.39897 6.59415 7.12469 7.23568 7.77627 8.33682 9.11765 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.003570 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.641530 B = 7841.136033 C = 8817.257439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 C -0.149 4.149 4 N -0.408 5.408 5 C 0.024 3.976 6 C -0.218 4.218 7 C -0.134 4.134 8 C -0.089 4.089 9 C 0.579 3.421 10 O -0.591 6.591 11 N -0.697 5.697 12 C 0.147 3.853 13 H 0.057 0.943 14 C -0.104 4.104 15 C -0.129 4.129 16 C 0.177 3.823 17 N -0.606 5.606 18 C -0.276 4.276 19 H 0.046 0.954 20 C -0.034 4.034 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.285 1.285 26 C 0.147 3.853 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.197 0.803 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.415 0.585 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.007 0.993 44 H 0.254 0.746 45 H 0.017 0.983 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.902 16.960 17.227 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.005 4.005 3 C -0.207 4.207 4 N -0.081 5.081 5 C -0.112 4.112 6 C -0.241 4.241 7 C -0.161 4.161 8 C -0.201 4.201 9 C 0.369 3.631 10 O -0.473 6.473 11 N -0.348 5.348 12 C 0.041 3.959 13 H 0.075 0.925 14 C -0.142 4.142 15 C -0.168 4.168 16 C 0.052 3.948 17 N -0.330 5.330 18 C -0.407 4.407 19 H 0.064 0.936 20 C -0.231 4.231 21 N -0.570 5.570 22 Si 0.794 3.206 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.212 1.212 26 C 0.020 3.980 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.214 0.786 35 H 0.185 0.815 36 H 0.179 0.821 37 H 0.252 0.748 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.174 17.225 16.009 23.883 hybrid contribution -0.250 -0.754 -1.014 1.288 sum -4.424 16.471 14.995 22.709 Atomic orbital electron populations 1.22097 0.91707 1.02424 1.04675 1.21991 0.96687 0.94853 0.87018 1.22083 1.00937 0.93183 1.04494 1.44375 1.32816 1.23474 1.07434 1.22529 1.03667 1.03343 0.81684 1.21160 1.03230 0.99216 1.00475 1.21697 1.02659 1.01885 0.89877 1.19998 1.06498 0.99056 0.94588 1.17507 0.78702 0.79513 0.87410 1.90724 1.62968 1.66001 1.27643 1.45552 1.41763 1.36447 1.11022 1.21271 0.93037 0.94864 0.86757 0.92471 1.21616 0.93676 1.00761 0.98149 1.22020 0.99014 0.98835 0.96973 1.20618 0.84170 0.92543 0.97453 1.44113 1.14523 1.68136 1.06195 1.19322 1.30593 0.98477 0.92279 0.93612 1.26003 0.99914 0.94208 1.02965 1.70125 1.47945 1.02739 1.36228 0.85235 0.77666 0.77562 0.80145 1.19802 1.20696 1.21190 1.21207 0.93645 0.92905 0.90281 0.93695 0.89647 0.89279 0.88838 0.93721 0.89329 0.89902 0.78609 0.81534 0.82083 0.74776 0.89332 0.90490 0.93289 0.89434 0.93842 0.97504 0.93706 0.96490 0.95501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.16 71.98 0.66 -1.96 16 2 C 0.10 2.18 3.48 44.99 0.16 2.34 16 3 C -0.15 -2.56 9.30 71.98 0.67 -1.89 16 4 N -0.41 -9.70 2.64 -488.68 -1.29 -10.99 16 5 C 0.02 0.41 10.33 83.48 0.86 1.27 16 6 C -0.22 -3.76 10.81 22.01 0.24 -3.52 16 7 C -0.13 -2.85 10.35 22.57 0.23 -2.62 16 8 C -0.09 -2.46 6.89 40.35 0.28 -2.18 16 9 C 0.58 19.91 7.74 86.45 0.67 20.58 16 10 O -0.59 -25.25 14.08 -4.31 -0.06 -25.31 16 11 N -0.70 -21.27 5.06 -446.14 -2.26 -23.53 16 12 C 0.15 5.46 2.57 45.07 0.12 5.58 16 13 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 14 C -0.10 -3.18 5.35 30.62 0.16 -3.01 16 15 C -0.13 -4.67 6.08 30.67 0.19 -4.48 16 16 C 0.18 8.61 5.23 86.36 0.45 9.06 16 17 N -0.61 -32.57 2.94 -699.08 -2.06 -34.63 16 18 C -0.28 -16.46 9.50 84.03 0.80 -15.66 16 19 H 0.05 2.81 7.85 -2.91 -0.02 2.79 16 20 C -0.03 -1.97 5.01 84.86 0.43 -1.55 16 21 N -0.93 -55.86 11.54 21.65 0.25 -55.61 16 22 Si 0.97 46.72 29.57 68.60 2.03 48.74 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 26 C 0.15 6.88 6.09 86.36 0.53 7.41 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 1.02 7.70 -2.39 -0.02 1.01 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 2.95 5.33 -2.39 -0.01 2.93 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.02 8.02 -2.39 -0.02 1.00 16 34 H 0.20 1.89 7.90 -2.91 -0.02 1.87 16 35 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.16 2.59 7.44 -2.91 -0.02 2.57 16 37 H 0.41 9.51 7.50 -92.70 -0.70 8.81 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.04 2.37 6.61 -2.39 -0.02 2.35 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.03 1.39 7.93 -2.39 -0.02 1.37 16 Total: -1.00 -75.79 366.78 3.31 -72.48 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.27 Total: 19.48 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.43 Total: 9.36 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.35 Total: -124.76 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.06 Total: -25.31 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -75.79 3.31 -72.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009540284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.799 kcal (2) G-P(sol) polarization free energy of solvation -75.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds