Wall clock time and date at job start Tue Mar 31 2020 08:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47334 * 2 1 4 4 C 1.50703 * 109.47179 * 240.00114 * 2 1 3 5 5 O 1.21283 * 120.00123 * 244.92638 * 4 2 1 6 6 N 1.34774 * 120.00115 * 64.92905 * 4 2 1 7 7 C 1.46505 * 119.99969 * 5.36841 * 6 4 2 8 8 C 1.46500 * 120.00006 * 185.37795 * 6 4 2 9 9 C 1.50696 * 109.47399 * 89.99658 * 8 6 4 10 10 H 1.07999 * 120.00268 * 359.97438 * 9 8 6 11 11 C 1.37880 * 120.00175 * 179.97438 * 9 8 6 12 12 N 1.31512 * 119.99819 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47108 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46763 * 120.00029 * 13 11 9 16 16 H 1.48498 * 109.46883 * 239.99972 * 13 11 9 17 17 N 1.46899 * 109.47268 * 120.00092 * 2 1 3 18 18 C 1.46904 * 110.99897 * 58.95213 * 17 2 1 19 19 C 1.46902 * 110.99866 * 295.00032 * 17 2 1 20 20 C 1.53008 * 109.46857 * 189.99542 * 19 17 2 21 21 C 1.50698 * 109.46649 * 180.02562 * 20 19 17 22 22 C 1.38230 * 119.62162 * 124.98172 * 21 20 19 23 23 C 1.38625 * 119.16218 * 179.78530 * 22 21 20 24 24 C 1.38677 * 118.42082 * 0.47220 * 23 22 21 25 25 C 1.38178 * 119.16090 * 359.50954 * 24 23 22 26 26 N 1.31860 * 119.61991 * 304.99433 * 21 20 19 27 27 H 1.08997 * 109.46659 * 70.73407 * 1 2 3 28 28 H 1.08999 * 109.47031 * 190.73329 * 1 2 3 29 29 H 1.08999 * 109.46618 * 310.74003 * 1 2 3 30 30 H 1.08998 * 109.46706 * 96.04432 * 7 6 4 31 31 H 1.08997 * 109.47206 * 216.04769 * 7 6 4 32 32 H 1.09000 * 109.47103 * 336.04978 * 7 6 4 33 33 H 1.09001 * 109.46635 * 209.99366 * 8 6 4 34 34 H 1.08999 * 109.46972 * 329.99346 * 8 6 4 35 35 H 0.97004 * 120.00251 * 179.97438 * 12 11 9 36 36 H 1.09002 * 109.47313 * 296.05000 * 18 17 2 37 37 H 1.09000 * 109.46897 * 56.04615 * 18 17 2 38 38 H 1.09000 * 109.47450 * 176.05071 * 18 17 2 39 39 H 1.08999 * 109.47016 * 70.00030 * 19 17 2 40 40 H 1.08996 * 109.46890 * 309.99365 * 19 17 2 41 41 H 1.08999 * 109.46910 * 60.00423 * 20 19 17 42 42 H 1.08996 * 109.47225 * 299.99617 * 20 19 17 43 43 H 1.08001 * 120.41151 * 359.97438 * 22 21 20 44 44 H 1.08002 * 120.78838 * 180.23101 * 23 22 21 45 45 H 1.07995 * 120.41477 * 179.77568 * 24 23 22 46 46 H 1.08007 * 119.61451 * 180.25174 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.6542 -1.7460 -1.1215 6 7 1.7907 -0.1949 -2.4521 7 6 1.1437 1.1133 -2.5803 8 6 2.1748 -0.9428 -3.6518 9 6 1.0335 -1.8301 -4.0775 10 1 0.1142 -1.8366 -3.5109 11 6 1.1630 -2.6336 -5.1905 12 7 2.2827 -2.6261 -5.8802 13 14 -0.2514 -3.7340 -5.7177 14 1 -1.3903 -3.5592 -4.7810 15 1 -0.6796 -3.3657 -7.0911 16 1 0.1912 -5.1514 -5.7006 17 7 2.0197 -0.6925 1.1994 18 6 1.5283 -2.0761 1.2459 19 6 1.6487 0.0392 2.4180 20 6 2.3789 -0.5664 3.6186 21 6 1.9978 0.1838 4.8688 22 6 1.4846 -0.5070 5.9505 23 6 1.1414 0.1920 7.0973 24 6 1.3188 1.5673 7.1099 25 6 1.8376 2.1895 5.9906 26 7 2.1576 1.4918 4.9182 27 1 -0.3632 0.3391 -0.9701 28 1 -0.3633 -1.0097 0.1914 29 1 -0.3632 0.6707 0.7787 30 1 1.9041 1.8835 -2.7094 31 1 0.4813 1.1078 -3.4458 32 1 0.5645 1.3219 -1.6807 33 1 2.4113 -0.2447 -4.4548 34 1 3.0495 -1.5555 -3.4335 35 1 2.3740 -3.1916 -6.6630 36 1 0.4419 -2.0731 1.3347 37 1 1.8167 -2.5950 0.3317 38 1 1.9616 -2.5869 2.1058 39 1 0.5723 -0.0346 2.5726 40 1 1.9298 1.0869 2.3125 41 1 3.4554 -0.4927 3.4641 42 1 2.0978 -1.6141 3.7242 43 1 1.3556 -1.5783 5.9037 44 1 0.7417 -0.3218 7.9591 45 1 1.0587 2.1441 7.9851 46 1 1.9826 3.2598 5.9939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123856433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:10 Heat of formation + Delta-G solvation = 22.909116 kcal Electronic energy + Delta-G solvation = -25007.757101 eV Core-core repulsion = 21512.349686 eV Total energy + Delta-G solvation = -3495.407415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.48890 -39.66209 -37.10301 -34.80825 -33.72096 -32.68202 -32.53481 -30.73149 -28.69462 -27.55962 -26.33162 -25.79352 -24.44745 -23.75302 -23.02057 -21.72627 -20.27142 -18.30033 -17.18208 -16.57874 -16.51254 -16.47543 -15.87377 -15.46352 -14.97405 -14.78352 -14.59346 -14.46516 -14.13090 -13.76472 -13.57362 -13.18188 -13.06917 -12.79140 -12.55257 -12.37367 -12.08740 -11.96123 -11.85191 -11.79270 -11.29139 -11.20689 -11.06001 -10.88206 -10.80024 -10.73457 -10.54362 -10.14833 -10.11438 -9.64352 -9.57490 -9.22453 -8.66565 -8.42538 -8.00446 -7.55939 -6.02816 -4.07714 0.83197 1.00181 3.29693 3.36803 3.39844 3.49125 3.50366 3.73640 4.07232 4.28551 4.45618 4.53626 4.60033 4.78034 4.83525 5.05159 5.05821 5.14984 5.27872 5.29865 5.32897 5.37558 5.44305 5.53706 5.61533 5.68972 5.71681 5.79554 5.86755 5.91147 5.94603 6.00541 6.02899 6.07157 6.22353 6.36985 6.43719 6.61056 7.04353 7.23707 7.32230 7.51176 7.60633 7.76037 7.94514 8.25773 8.49042 8.92946 9.17743 9.57509 11.05116 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030306 B = 0.002643 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.689852 B =10589.736883 C =10879.313387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.065 3.935 3 H 0.099 0.901 4 C 0.515 3.485 5 O -0.526 6.526 6 N -0.602 5.602 7 C 0.070 3.930 8 C 0.245 3.755 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.517 5.517 18 C 0.002 3.998 19 C 0.066 3.934 20 C -0.068 4.068 21 C 0.139 3.861 22 C -0.172 4.172 23 C -0.074 4.074 24 C -0.184 4.184 25 C 0.102 3.898 26 N -0.480 5.480 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.019 0.981 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 9.477 23.755 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.047 4.047 3 H 0.117 0.883 4 C 0.300 3.700 5 O -0.403 6.403 6 N -0.335 5.335 7 C -0.074 4.074 8 C 0.126 3.874 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.240 5.240 18 C -0.146 4.146 19 C -0.063 4.063 20 C -0.106 4.106 21 C 0.001 3.999 22 C -0.191 4.191 23 C -0.100 4.100 24 C -0.204 4.204 25 C -0.055 4.055 26 N -0.189 5.189 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.943 9.254 22.862 24.839 hybrid contribution -2.129 -0.879 0.531 2.363 sum -5.072 8.375 23.393 25.359 Atomic orbital electron populations 1.22610 0.95921 1.03113 1.03393 1.21641 0.93873 0.98788 0.90427 0.88314 1.20035 0.80417 0.85521 0.83984 1.90548 1.40230 1.23931 1.85608 1.48086 1.58924 1.19219 1.07235 1.21928 0.97549 0.85209 1.02718 1.19277 0.96854 0.91203 0.80084 1.21464 1.00337 1.23710 1.10858 0.92518 1.24942 0.95984 0.96871 0.96361 1.69946 1.25130 1.39836 1.18358 0.86461 0.82252 0.80565 0.78240 1.19871 1.20987 1.20880 1.61907 1.59244 1.02648 1.00196 1.22892 0.96673 0.89629 1.05383 1.22000 0.96828 0.98681 0.88751 1.20576 1.02506 0.97993 0.89525 1.21354 0.93340 0.89952 0.95293 1.22035 1.01341 1.01544 0.94225 1.21589 0.96202 0.94366 0.97866 1.22126 1.02352 0.95573 1.00376 1.22786 0.93982 1.00264 0.88482 1.67522 1.16056 1.07910 1.27418 0.90159 0.91476 0.92175 0.93667 0.91070 0.91281 0.95085 0.93663 0.92783 0.96227 0.87280 0.92030 0.95132 0.89918 0.88811 0.90120 0.84787 0.84962 0.84979 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 7.95 37.16 0.30 -2.38 16 2 C 0.06 1.04 1.93 -68.86 -0.13 0.90 16 3 H 0.10 1.42 7.64 -51.93 -0.40 1.02 16 4 C 0.51 10.88 6.77 -10.99 -0.07 10.80 16 5 O -0.53 -13.19 13.26 5.56 0.07 -13.12 16 6 N -0.60 -12.94 2.85 -182.95 -0.52 -13.46 16 7 C 0.07 1.13 9.71 59.85 0.58 1.71 16 8 C 0.25 6.48 5.23 -5.20 -0.03 6.46 16 9 C -0.52 -14.86 9.39 -34.44 -0.32 -15.19 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 13 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 N -0.52 -7.98 4.57 -236.28 -1.08 -9.06 16 18 C 0.00 0.02 8.42 60.07 0.51 0.53 16 19 C 0.07 0.82 4.28 -3.82 -0.02 0.80 16 20 C -0.07 -0.75 5.54 -27.88 -0.15 -0.90 16 21 C 0.14 1.47 6.18 -82.58 -0.51 0.96 16 22 C -0.17 -1.49 9.71 -39.44 -0.38 -1.87 16 23 C -0.07 -0.54 10.18 -39.28 -0.40 -0.94 16 24 C -0.18 -1.31 10.11 -39.44 -0.40 -1.71 16 25 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 26 N -0.48 -5.40 9.88 -9.47 -0.09 -5.50 16 27 H 0.08 1.13 5.39 -51.93 -0.28 0.85 16 28 H 0.07 1.01 5.94 -51.93 -0.31 0.70 16 29 H 0.06 0.70 7.32 -51.93 -0.38 0.32 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 32 H 0.07 0.92 4.12 -51.93 -0.21 0.70 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.02 0.28 6.28 -51.93 -0.33 -0.04 16 37 H 0.11 2.15 5.19 -51.93 -0.27 1.88 16 38 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 39 H 0.03 0.37 7.19 -51.93 -0.37 0.00 16 40 H 0.08 1.06 7.80 -51.93 -0.41 0.65 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 0.80 6.28 -51.93 -0.33 0.48 16 43 H 0.13 0.92 7.95 -52.49 -0.42 0.50 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -33.89 364.44 -8.66 -42.56 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.91 Total: 0.72 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.33 Total: 1.50 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.96 Total: -53.99 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.89 -8.66 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123856433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.465 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds