Wall clock time and date at job start Tue Mar 31 2020 08:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47334 * 2 1 4 4 C 1.50703 * 109.47179 * 240.00114 * 2 1 3 5 5 O 1.21283 * 120.00123 * 244.92638 * 4 2 1 6 6 N 1.34774 * 120.00115 * 64.92905 * 4 2 1 7 7 C 1.46505 * 119.99969 * 5.36841 * 6 4 2 8 8 C 1.46500 * 120.00006 * 185.37795 * 6 4 2 9 9 C 1.50696 * 109.47399 * 89.99658 * 8 6 4 10 10 H 1.07999 * 120.00268 * 359.97438 * 9 8 6 11 11 C 1.37880 * 120.00175 * 179.97438 * 9 8 6 12 12 N 1.31512 * 119.99819 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47108 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46763 * 120.00029 * 13 11 9 16 16 H 1.48498 * 109.46883 * 239.99972 * 13 11 9 17 17 N 1.46899 * 109.47268 * 120.00092 * 2 1 3 18 18 C 1.46904 * 110.99897 * 58.95213 * 17 2 1 19 19 C 1.46902 * 110.99866 * 295.00032 * 17 2 1 20 20 C 1.53008 * 109.46857 * 189.99542 * 19 17 2 21 21 C 1.50698 * 109.46649 * 180.02562 * 20 19 17 22 22 C 1.38230 * 119.62162 * 124.98172 * 21 20 19 23 23 C 1.38625 * 119.16218 * 179.78530 * 22 21 20 24 24 C 1.38677 * 118.42082 * 0.47220 * 23 22 21 25 25 C 1.38178 * 119.16090 * 359.50954 * 24 23 22 26 26 N 1.31860 * 119.61991 * 304.99433 * 21 20 19 27 27 H 1.08997 * 109.46659 * 70.73407 * 1 2 3 28 28 H 1.08999 * 109.47031 * 190.73329 * 1 2 3 29 29 H 1.08999 * 109.46618 * 310.74003 * 1 2 3 30 30 H 1.08998 * 109.46706 * 96.04432 * 7 6 4 31 31 H 1.08997 * 109.47206 * 216.04769 * 7 6 4 32 32 H 1.09000 * 109.47103 * 336.04978 * 7 6 4 33 33 H 1.09001 * 109.46635 * 209.99366 * 8 6 4 34 34 H 1.08999 * 109.46972 * 329.99346 * 8 6 4 35 35 H 0.97004 * 120.00251 * 179.97438 * 12 11 9 36 36 H 1.09002 * 109.47313 * 296.05000 * 18 17 2 37 37 H 1.09000 * 109.46897 * 56.04615 * 18 17 2 38 38 H 1.09000 * 109.47450 * 176.05071 * 18 17 2 39 39 H 1.08999 * 109.47016 * 70.00030 * 19 17 2 40 40 H 1.08996 * 109.46890 * 309.99365 * 19 17 2 41 41 H 1.08999 * 109.46910 * 60.00423 * 20 19 17 42 42 H 1.08996 * 109.47225 * 299.99617 * 20 19 17 43 43 H 1.08001 * 120.41151 * 359.97438 * 22 21 20 44 44 H 1.08002 * 120.78838 * 180.23101 * 23 22 21 45 45 H 1.07995 * 120.41477 * 179.77568 * 24 23 22 46 46 H 1.08007 * 119.61451 * 180.25174 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.6542 -1.7460 -1.1215 6 7 1.7907 -0.1949 -2.4521 7 6 1.1437 1.1133 -2.5803 8 6 2.1748 -0.9428 -3.6518 9 6 1.0335 -1.8301 -4.0775 10 1 0.1142 -1.8366 -3.5109 11 6 1.1630 -2.6336 -5.1905 12 7 2.2827 -2.6261 -5.8802 13 14 -0.2514 -3.7340 -5.7177 14 1 -1.3903 -3.5592 -4.7810 15 1 -0.6796 -3.3657 -7.0911 16 1 0.1912 -5.1514 -5.7006 17 7 2.0197 -0.6925 1.1994 18 6 1.5283 -2.0761 1.2459 19 6 1.6487 0.0392 2.4180 20 6 2.3789 -0.5664 3.6186 21 6 1.9978 0.1838 4.8688 22 6 1.4846 -0.5070 5.9505 23 6 1.1414 0.1920 7.0973 24 6 1.3188 1.5673 7.1099 25 6 1.8376 2.1895 5.9906 26 7 2.1576 1.4918 4.9182 27 1 -0.3632 0.3391 -0.9701 28 1 -0.3633 -1.0097 0.1914 29 1 -0.3632 0.6707 0.7787 30 1 1.9041 1.8835 -2.7094 31 1 0.4813 1.1078 -3.4458 32 1 0.5645 1.3219 -1.6807 33 1 2.4113 -0.2447 -4.4548 34 1 3.0495 -1.5555 -3.4335 35 1 2.3740 -3.1916 -6.6630 36 1 0.4419 -2.0731 1.3347 37 1 1.8167 -2.5950 0.3317 38 1 1.9616 -2.5869 2.1058 39 1 0.5723 -0.0346 2.5726 40 1 1.9298 1.0869 2.3125 41 1 3.4554 -0.4927 3.4641 42 1 2.0978 -1.6141 3.7242 43 1 1.3556 -1.5783 5.9037 44 1 0.7417 -0.3218 7.9591 45 1 1.0587 2.1441 7.9851 46 1 1.9826 3.2598 5.9939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123856433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:09 Heat of formation + Delta-G solvation = -0.227145 kcal Electronic energy + Delta-G solvation = -25008.760364 eV Core-core repulsion = 21512.349686 eV Total energy + Delta-G solvation = -3496.410678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33406 -40.96819 -38.44107 -36.58255 -34.91600 -34.38817 -33.21938 -31.91773 -29.80500 -29.29664 -27.68705 -27.06894 -25.88215 -24.63500 -24.27429 -22.80203 -21.40602 -19.87300 -18.67132 -18.10131 -17.69892 -17.29049 -17.07423 -16.66551 -16.29881 -16.17893 -15.96207 -15.72598 -15.41826 -14.76658 -14.63070 -14.21724 -14.20833 -14.05936 -13.94490 -13.55458 -13.50727 -13.26778 -13.22755 -12.98437 -12.92919 -12.64188 -12.50201 -12.39428 -12.26833 -12.10143 -12.06607 -11.78344 -11.62988 -10.75825 -10.64899 -10.34583 -10.25130 -9.84335 -9.37976 -9.19694 -8.21673 -6.36855 0.21882 0.42044 1.36138 1.38381 1.50151 1.85421 2.24675 2.40996 2.87449 3.02903 3.07564 3.45480 3.65859 3.84748 3.99790 4.05841 4.09185 4.17427 4.29025 4.29813 4.35482 4.37675 4.45365 4.58204 4.64198 4.66934 4.70641 4.77982 4.80489 4.87759 4.93927 5.01404 5.04553 5.09481 5.23342 5.24723 5.30725 5.32736 5.33038 5.58729 5.84746 5.86166 5.99899 6.07204 6.18072 6.71659 6.82842 7.12332 7.29401 7.53577 8.85536 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030306 B = 0.002643 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.689852 B =10589.736883 C =10879.313387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.122 0.878 4 C 0.503 3.497 5 O -0.576 6.576 6 N -0.610 5.610 7 C 0.065 3.935 8 C 0.260 3.740 9 C -0.538 4.538 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.969 3.031 14 H -0.265 1.265 15 H -0.270 1.270 16 H -0.282 1.282 17 N -0.533 5.533 18 C 0.009 3.991 19 C 0.076 3.924 20 C -0.062 4.062 21 C 0.116 3.884 22 C -0.178 4.178 23 C -0.077 4.077 24 C -0.178 4.178 25 C 0.086 3.914 26 N -0.511 5.511 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.021 0.979 34 H -0.003 1.003 35 H 0.267 0.733 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.148 0.852 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 10.649 26.183 29.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.036 4.036 3 H 0.140 0.860 4 C 0.291 3.709 5 O -0.456 6.456 6 N -0.342 5.342 7 C -0.076 4.076 8 C 0.138 3.862 9 C -0.577 4.577 10 H 0.073 0.927 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.793 3.207 14 H -0.190 1.190 15 H -0.195 1.195 16 H -0.208 1.208 17 N -0.257 5.257 18 C -0.138 4.138 19 C -0.052 4.052 20 C -0.100 4.100 21 C -0.022 4.022 22 C -0.198 4.198 23 C -0.103 4.103 24 C -0.197 4.197 25 C -0.071 4.071 26 N -0.221 5.221 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.039 0.961 34 H 0.015 0.985 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.166 0.834 44 H 0.178 0.822 45 H 0.179 0.821 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.353 10.474 25.309 27.909 hybrid contribution -1.323 -1.190 -0.137 1.785 sum -6.677 9.284 25.172 27.648 Atomic orbital electron populations 1.22555 0.93888 1.03224 1.04553 1.21580 0.95203 0.98797 0.88007 0.86043 1.21075 0.79446 0.85146 0.85196 1.90537 1.42327 1.26282 1.86489 1.48106 1.59290 1.20728 1.06059 1.22211 0.98222 0.82863 1.04349 1.18734 0.94869 0.90777 0.81803 1.21702 1.00528 1.24367 1.11069 0.92742 1.25888 0.98777 0.98298 0.96362 1.70070 1.27220 1.40743 1.18885 0.85350 0.78859 0.78088 0.78397 1.18964 1.19486 1.20800 1.61866 1.59995 1.02742 1.01108 1.22700 0.97451 0.89818 1.03850 1.21951 0.97398 0.98148 0.87677 1.20470 1.01355 0.98587 0.89591 1.21283 0.95071 0.90144 0.95667 1.22246 1.00922 1.02405 0.94186 1.21990 0.95432 0.94653 0.98199 1.22486 1.00722 0.95853 1.00679 1.23214 0.94144 1.01248 0.88527 1.67452 1.17172 1.08434 1.29026 0.90104 0.92730 0.88936 0.91587 0.91487 0.87798 0.96117 0.98453 0.92439 0.95043 0.91662 0.90187 0.94287 0.90076 0.90408 0.89306 0.83391 0.82162 0.82052 0.80963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.70 7.95 71.98 0.57 -4.12 16 2 C 0.08 2.35 1.93 44.17 0.09 2.43 16 3 H 0.12 3.20 7.64 -2.39 -0.02 3.18 16 4 C 0.50 21.78 6.77 87.66 0.59 22.37 16 5 O -0.58 -30.54 13.26 -3.04 -0.04 -30.58 16 6 N -0.61 -26.75 2.85 -851.13 -2.43 -29.18 16 7 C 0.07 2.03 9.71 127.77 1.24 3.27 16 8 C 0.26 14.40 5.23 85.63 0.45 14.85 16 9 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 10 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 11 C 0.01 0.32 5.46 84.66 0.46 0.78 16 12 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 13 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 N -0.53 -16.17 4.57 -901.44 -4.12 -20.30 16 18 C 0.01 0.30 8.42 127.69 1.08 1.37 16 19 C 0.08 1.78 4.28 86.31 0.37 2.15 16 20 C -0.06 -1.32 5.54 29.85 0.17 -1.15 16 21 C 0.12 2.32 6.18 42.55 0.26 2.58 16 22 C -0.18 -2.71 9.71 22.36 0.22 -2.50 16 23 C -0.08 -0.89 10.18 22.47 0.23 -0.66 16 24 C -0.18 -1.99 10.11 22.36 0.23 -1.76 16 25 C 0.09 1.31 11.18 84.67 0.95 2.26 16 26 N -0.51 -10.85 9.88 -183.88 -1.82 -12.67 16 27 H 0.08 2.06 5.39 -2.39 -0.01 2.05 16 28 H 0.05 1.55 5.94 -2.39 -0.01 1.54 16 29 H 0.09 1.80 7.32 -2.39 -0.02 1.78 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 32 H 0.10 2.48 4.12 -2.39 -0.01 2.47 16 33 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 34 H 0.00 -0.17 7.35 -2.39 -0.02 -0.19 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.03 0.89 6.28 -2.39 -0.01 0.88 16 37 H 0.06 2.70 5.19 -2.39 -0.01 2.69 16 38 H 0.08 2.14 6.47 -2.39 -0.02 2.13 16 39 H 0.04 0.86 7.19 -2.39 -0.02 0.84 16 40 H 0.08 1.94 7.80 -2.39 -0.02 1.92 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 1.68 6.28 -2.39 -0.02 1.66 16 43 H 0.15 1.70 7.95 -2.91 -0.02 1.68 16 44 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 45 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 46 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -77.79 364.44 2.01 -75.79 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.97 Total: 15.68 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 7.13 Total: 10.81 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -8.08 Total: -118.94 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.04 Total: -30.58 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -77.79 2.01 -75.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123856433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.558 kcal (2) G-P(sol) polarization free energy of solvation -77.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds