Wall clock time and date at job start Tue Mar 31 2020 09:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47194 * 2 1 4 4 N 1.40087 * 126.03737 * 270.02162 * 3 2 1 5 5 C 1.30832 * 108.20698 * 179.97438 * 4 3 2 6 6 C 1.39864 * 108.20587 * 359.78112 * 5 4 3 7 7 C 1.34953 * 126.03919 * 89.99580 * 3 2 1 8 8 C 1.50694 * 126.12719 * 359.97438 * 7 3 2 9 9 C 1.53039 * 109.46047 * 144.99803 * 8 7 3 10 10 C 1.53196 * 109.33748 * 181.36823 * 9 8 7 11 11 N 1.46931 * 108.77131 * 305.41286 * 10 9 8 12 12 C 1.34773 * 120.60493 * 233.53550 * 11 10 9 13 13 O 1.21287 * 120.00452 * 180.02562 * 12 11 10 14 14 C 1.50706 * 120.00032 * 0.02562 * 12 11 10 15 15 C 1.52997 * 109.47113 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47113 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99663 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99986 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00168 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00110 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47007 * 89.99651 * 20 18 16 22 22 H 1.48502 * 109.47200 * 209.99471 * 20 18 16 23 23 H 1.48497 * 109.47371 * 329.99893 * 20 18 16 24 24 C 1.46928 * 118.76737 * 53.55408 * 11 10 9 25 25 C 1.53045 * 109.45699 * 265.06322 * 8 7 3 26 26 H 1.08996 * 109.47358 * 60.00082 * 1 2 3 27 27 H 1.09000 * 109.47345 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47133 * 300.00129 * 1 2 3 29 29 H 1.08994 * 109.47466 * 239.99642 * 2 1 3 30 30 H 1.09003 * 109.46941 * 119.99397 * 2 1 3 31 31 H 1.08003 * 125.89646 * 179.97438 * 5 4 3 32 32 H 1.08002 * 126.04364 * 180.23141 * 6 5 4 33 33 H 1.08998 * 109.46158 * 25.02364 * 8 7 3 34 34 H 1.09002 * 109.49756 * 301.33546 * 9 8 7 35 35 H 1.09000 * 109.49883 * 61.40289 * 9 8 7 36 36 H 1.08996 * 109.58760 * 65.17188 * 10 9 8 37 37 H 1.09001 * 109.58519 * 185.59185 * 10 9 8 38 38 H 1.08994 * 109.46960 * 300.00074 * 14 12 11 39 39 H 1.08998 * 109.46748 * 60.00294 * 14 12 11 40 40 H 1.09007 * 109.47567 * 299.99779 * 15 14 12 41 41 H 1.09003 * 109.47388 * 60.00133 * 15 14 12 42 42 H 0.96999 * 120.00384 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.58597 * 186.62384 * 24 11 10 44 44 H 1.09004 * 109.58075 * 66.20134 * 24 11 10 45 45 H 1.08993 * 109.49877 * 298.56725 * 25 8 7 46 46 H 1.09003 * 109.49434 * 58.63222 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2926 2.1583 -1.1328 5 6 2.7074 3.3327 -0.7322 6 6 2.7058 3.3430 0.6664 7 6 2.2829 2.1298 1.0912 8 6 2.1285 1.6949 2.5258 9 6 3.2318 2.3323 3.3734 10 6 3.0927 1.8613 4.8245 11 7 1.7295 2.1542 5.2880 12 6 1.5257 2.8581 6.4191 13 8 0.3958 3.0933 6.7919 14 6 2.7020 3.3532 7.2208 15 6 2.1982 4.1165 8.4473 16 6 3.3744 4.6110 9.2493 17 1 4.3806 4.4020 8.9171 18 6 3.1660 5.3310 10.4065 19 7 4.1924 5.7621 11.1067 20 14 1.4256 5.6930 10.9806 21 1 0.9610 4.5998 11.8719 22 1 1.4068 6.9789 11.7232 23 1 0.5256 5.7880 9.8033 24 6 0.5929 1.6651 4.4958 25 6 0.7604 2.1389 3.0486 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9977 4.1536 -1.3712 32 1 2.9936 4.1719 1.2962 33 1 2.2053 0.6093 2.5864 34 1 4.2061 2.0343 2.9861 35 1 3.1405 3.4177 3.3329 36 1 3.2741 0.7880 4.8794 37 1 3.8131 2.3882 5.4503 38 1 3.3045 2.5043 7.5438 39 1 3.3089 4.0159 6.6040 40 1 1.5953 4.9655 8.1247 41 1 1.5914 3.4535 9.0640 42 1 4.0457 6.2683 11.9210 43 1 -0.3358 2.0625 4.9052 44 1 0.5702 0.5757 4.5233 45 1 0.6921 3.2261 3.0115 46 1 -0.0243 1.7037 2.4297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291830708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:43 Heat of formation + Delta-G solvation = 2.845874 kcal Electronic energy + Delta-G solvation = -25158.689935 eV Core-core repulsion = 21662.412513 eV Total energy + Delta-G solvation = -3496.277422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.34930 -41.06853 -38.53326 -35.57347 -35.44429 -34.61101 -33.39588 -32.03938 -30.71678 -30.05203 -28.21420 -26.11340 -24.66477 -24.33747 -23.33032 -22.28500 -21.51633 -20.34509 -19.69292 -19.05622 -18.09945 -17.59319 -16.72787 -16.64092 -16.23986 -16.07143 -15.91594 -15.23925 -15.14171 -14.94914 -14.74478 -14.58949 -14.38598 -14.34980 -14.01523 -13.73404 -13.49416 -13.32342 -13.25661 -12.89890 -12.87404 -12.35347 -12.31649 -12.19266 -11.97701 -11.92919 -11.76310 -11.71970 -11.65183 -11.48379 -11.36006 -10.76782 -10.65583 -10.18545 -9.62396 -9.43136 -8.30253 -6.32715 0.92868 1.33590 1.35859 1.50831 1.62165 1.69746 1.91868 2.07387 2.35961 3.05585 3.42593 3.63638 3.67646 3.72826 3.95796 4.09011 4.11942 4.16391 4.18427 4.33181 4.35348 4.39260 4.46124 4.49935 4.61826 4.64608 4.69553 4.75167 4.85133 4.87613 4.91079 4.94760 5.00373 5.08063 5.12500 5.15776 5.26239 5.35352 5.44674 5.45990 5.62218 5.66719 5.76824 6.16303 6.24847 6.41524 6.73692 6.79500 7.26109 7.32734 8.85318 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.002787 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.544333 B =10043.473669 C =10479.710169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.117 3.883 3 N -0.371 5.371 4 N -0.335 5.335 5 C 0.037 3.963 6 C -0.287 4.287 7 C 0.096 3.904 8 C -0.014 4.014 9 C -0.118 4.118 10 C 0.102 3.898 11 N -0.611 5.611 12 C 0.513 3.487 13 O -0.589 6.589 14 C -0.114 4.114 15 C 0.005 3.995 16 C -0.527 4.527 17 H 0.052 0.948 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.936 3.064 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C 0.111 3.889 25 C -0.112 4.112 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.200 0.800 32 H 0.150 0.850 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.267 0.733 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 -14.610 -25.325 29.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.003 4.003 3 N -0.154 5.154 4 N -0.156 5.156 5 C -0.147 4.147 6 C -0.316 4.316 7 C -0.032 4.032 8 C -0.034 4.034 9 C -0.157 4.157 10 C -0.020 4.020 11 N -0.345 5.345 12 C 0.304 3.696 13 O -0.469 6.469 14 C -0.154 4.154 15 C -0.033 4.033 16 C -0.565 4.565 17 H 0.070 0.930 18 C -0.184 4.184 19 N -0.584 5.584 20 Si 0.761 3.239 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.011 4.011 25 C -0.151 4.151 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.217 0.783 32 H 0.167 0.833 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.025 0.975 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.927 -15.300 -26.031 30.594 hybrid contribution -0.389 1.277 1.157 1.767 sum -5.317 -14.024 -24.874 29.046 Atomic orbital electron populations 1.22198 0.93754 1.04293 1.02200 1.21975 0.95711 0.76943 1.05678 1.48962 1.50857 1.12749 1.02819 1.77290 1.23592 1.05361 1.09390 1.24223 0.98818 0.95982 0.95707 1.21474 1.15822 0.99211 0.95090 1.21216 0.99178 0.92283 0.90517 1.19793 0.95789 1.01805 0.86062 1.21916 0.99059 1.01257 0.93426 1.22036 0.81865 1.02781 0.95319 1.48240 1.08682 1.54074 1.23484 1.21225 0.90733 0.76648 0.81031 1.90625 1.26693 1.58979 1.70626 1.21503 0.95743 1.01622 0.96514 1.19226 0.95202 0.95210 0.93633 1.21427 0.93630 1.33755 1.07639 0.92963 1.25780 1.00553 0.95283 0.96744 1.70016 1.32208 1.39020 1.17140 0.85859 0.81057 0.78067 0.78909 1.19345 1.20434 1.18720 1.21636 0.89547 0.99875 0.90073 1.21874 0.96763 1.01445 0.95025 0.93556 0.88161 0.92094 0.88473 0.86558 0.78349 0.83253 0.87592 0.88415 0.91627 0.88538 0.88657 0.87909 0.88158 0.97470 0.97427 0.92408 0.91222 0.88990 0.92735 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 10.24 71.98 0.74 -0.76 16 2 C 0.12 1.18 6.96 86.38 0.60 1.78 16 3 N -0.37 -6.41 3.61 -334.71 -1.21 -7.62 16 4 N -0.33 -7.32 12.58 -57.03 -0.72 -8.04 16 5 C 0.04 0.72 12.02 85.24 1.02 1.74 16 6 C -0.29 -5.35 9.98 21.99 0.22 -5.13 16 7 C 0.10 1.61 5.85 41.40 0.24 1.85 16 8 C -0.01 -0.18 2.34 -11.51 -0.03 -0.21 16 9 C -0.12 -1.62 4.92 30.67 0.15 -1.47 16 10 C 0.10 1.64 6.34 86.36 0.55 2.19 16 11 N -0.61 -14.62 2.97 -818.87 -2.43 -17.05 16 12 C 0.51 17.93 7.70 87.66 0.67 18.60 16 13 O -0.59 -25.80 15.40 -3.05 -0.05 -25.85 16 14 C -0.11 -4.24 3.98 29.85 0.12 -4.12 16 15 C 0.01 0.26 3.33 29.85 0.10 0.36 16 16 C -0.53 -30.13 9.66 25.60 0.25 -29.88 16 17 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 18 C 0.01 0.83 5.47 84.65 0.46 1.30 16 19 N -0.94 -58.81 13.96 21.45 0.30 -58.51 16 20 Si 0.94 46.76 27.47 68.60 1.88 48.65 16 21 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.26 -13.11 6.54 99.48 0.65 -12.46 16 24 C 0.11 2.17 6.43 86.36 0.56 2.73 16 25 C -0.11 -1.77 5.34 30.67 0.16 -1.61 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.59 6.54 -2.39 -0.02 0.58 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.12 0.59 6.98 -2.39 -0.02 0.57 16 31 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.15 2.57 7.41 -2.91 -0.02 2.55 16 33 H 0.11 0.89 6.95 -2.39 -0.02 0.88 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.10 7.36 -2.39 -0.02 1.08 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.65 5.93 -2.39 -0.01 1.63 16 38 H 0.10 3.42 7.94 -2.39 -0.02 3.40 16 39 H 0.10 3.40 7.69 -2.39 -0.02 3.38 16 40 H 0.01 0.36 7.16 -2.38 -0.02 0.35 16 41 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.07 1.77 7.01 -2.39 -0.02 1.75 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 1.14 6.54 -2.39 -0.02 1.13 16 Total: -1.00 -78.31 363.69 4.50 -73.81 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.90 Total: 7.24 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 5.82 Total: -12.63 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -4.06 Total: -91.22 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.85 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.88 Total: 48.65 kcal Total: -78.31 4.50 -73.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291830708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.659 kcal (2) G-P(sol) polarization free energy of solvation -78.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds