Wall clock time and date at job start Tue Mar 31 2020 08:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46485 * 2 1 4 4 N 1.46495 * 109.47102 * 240.00667 * 2 1 3 5 5 C 1.34771 * 120.00463 * 84.99814 * 4 2 1 6 6 O 1.21587 * 119.99857 * 359.97438 * 5 4 2 7 7 N 1.34784 * 120.00282 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00155 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47203 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47063 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00776 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00031 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00276 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99688 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47398 * 89.99895 * 14 12 10 16 16 H 1.48501 * 109.46780 * 209.99633 * 14 12 10 17 17 H 1.48498 * 109.47112 * 329.99298 * 14 12 10 18 18 C 1.50696 * 109.47472 * 120.00026 * 2 1 3 19 19 C 1.38288 * 119.92554 * 260.00599 * 18 2 1 20 20 C 1.38100 * 120.07490 * 179.97438 * 19 18 2 21 21 C 1.38914 * 119.92399 * 359.97438 * 20 19 18 22 22 N 1.39675 * 120.07712 * 179.97438 * 21 20 19 23 23 C 1.46507 * 119.99622 * 0.02562 * 22 21 20 24 24 C 1.46498 * 120.00353 * 179.72315 * 22 21 20 25 25 C 1.38915 * 119.85317 * 0.25647 * 21 20 19 26 26 C 1.38104 * 119.92020 * 359.48918 * 25 21 20 27 27 H 1.09002 * 109.47411 * 59.99735 * 1 2 3 28 28 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47123 * 299.99361 * 1 2 3 30 30 H 0.97005 * 119.99670 * 264.99254 * 4 2 1 31 31 H 0.97003 * 119.99503 * 359.97438 * 7 5 4 32 32 H 1.09004 * 109.46709 * 299.99484 * 8 7 5 33 33 H 1.09001 * 109.47542 * 59.99079 * 8 7 5 34 34 H 1.08997 * 109.47282 * 300.00136 * 9 8 7 35 35 H 1.09006 * 109.47136 * 59.99885 * 9 8 7 36 36 H 0.96991 * 119.99772 * 180.02562 * 13 12 10 37 37 H 1.08000 * 119.96699 * 359.95344 * 19 18 2 38 38 H 1.07999 * 120.04149 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47091 * 90.00293 * 23 22 21 40 40 H 1.09004 * 109.46622 * 209.99851 * 23 22 21 41 41 H 1.08997 * 109.47201 * 329.99553 * 23 22 21 42 42 H 1.09001 * 109.46777 * 60.00310 * 24 22 21 43 43 H 1.08996 * 109.47313 * 179.97438 * 24 22 21 44 44 H 1.08998 * 109.47521 * 300.00365 * 24 22 21 45 45 H 1.07991 * 120.04046 * 179.72622 * 25 21 20 46 46 H 1.07995 * 119.96395 * 180.25137 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8574 1.1615 -2.4118 7 7 2.5958 -0.6535 -3.4578 8 6 2.7362 0.0775 -4.7195 9 6 3.2605 -0.8687 -5.8015 10 6 3.4043 -0.1168 -7.0996 11 1 3.1479 0.9312 -7.1480 12 6 3.8643 -0.7666 -8.2253 13 7 3.9894 -0.1106 -9.3583 14 14 4.3085 -2.5791 -8.1415 15 1 3.1114 -3.3975 -8.4614 16 1 5.3843 -2.8709 -9.1228 17 1 4.7832 -2.9097 -6.7738 18 6 2.0324 -0.7104 1.2304 19 6 2.4585 0.0213 2.3238 20 6 2.9190 -0.6266 3.4531 21 6 2.9534 -2.0148 3.4902 22 7 3.4190 -2.6733 4.6305 23 6 3.8714 -1.8998 5.7896 24 6 3.4489 -4.1374 4.6701 25 6 2.5291 -2.7466 2.3883 26 6 2.0649 -2.0925 1.2641 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 2.2491 -1.6316 -1.1527 31 1 2.8265 -1.5947 -3.4142 32 1 1.7658 0.4722 -5.0206 33 1 3.4379 0.9010 -4.5863 34 1 4.2309 -1.2631 -5.5002 35 1 2.5591 -1.6923 -5.9349 36 1 4.3127 -0.5679 -10.1503 37 1 2.4314 1.1005 2.2944 38 1 3.2520 -0.0546 4.3066 39 1 3.0295 -1.7218 6.4587 40 1 4.6446 -2.4568 6.3188 41 1 4.2767 -0.9453 5.4538 42 1 4.0901 -4.5094 3.8710 43 1 3.8402 -4.4670 5.6326 44 1 2.4391 -4.5253 4.5360 45 1 2.5587 -3.8259 2.4122 46 1 1.7311 -2.6608 0.4086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773439708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:00 Heat of formation + Delta-G solvation = -24.848936 kcal Electronic energy + Delta-G solvation = -24016.607301 eV Core-core repulsion = 20519.128941 eV Total energy + Delta-G solvation = -3497.478359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29510 -40.42113 -38.00014 -36.63653 -35.66209 -34.78071 -32.70737 -32.05601 -31.20199 -29.70992 -28.97932 -26.78254 -25.88323 -23.57793 -23.47396 -22.56385 -21.80877 -20.99999 -19.60287 -18.89379 -18.26266 -17.37342 -16.62187 -16.55518 -16.32422 -15.98646 -15.91838 -15.54739 -15.42504 -15.16917 -14.82787 -14.55193 -14.40311 -14.37655 -14.19125 -13.48452 -13.39674 -13.32514 -13.25431 -13.01140 -12.94938 -12.78558 -12.62576 -12.15679 -12.13753 -11.90226 -11.74490 -11.64053 -11.51438 -11.24312 -10.77068 -10.64708 -10.31425 -9.81972 -9.72406 -8.28208 -8.15328 -6.35275 0.55167 0.59805 1.40254 1.43193 1.54533 1.80440 2.20854 2.27661 2.38541 2.94403 3.06629 3.41227 3.76526 3.92392 4.09869 4.21308 4.29339 4.36919 4.40775 4.47131 4.48606 4.50870 4.55773 4.69927 4.76468 4.78493 4.81394 4.87468 4.90968 4.91676 4.98833 5.15868 5.18409 5.26936 5.37829 5.43878 5.45808 5.48330 5.53517 5.69339 5.83630 5.93336 6.08081 6.25421 6.37754 6.56235 6.71958 7.17441 7.28919 7.64562 8.88580 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.002360 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.972474 B =11862.753209 C =12746.183872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.211 3.789 3 H 0.070 0.930 4 N -0.726 5.726 5 C 0.699 3.301 6 O -0.639 6.639 7 N -0.733 5.733 8 C 0.165 3.835 9 C -0.011 4.011 10 C -0.538 4.538 11 H 0.028 0.972 12 C 0.002 3.998 13 N -0.951 5.951 14 Si 0.961 3.039 15 H -0.265 1.265 16 H -0.287 1.287 17 H -0.237 1.237 18 C -0.157 4.157 19 C -0.067 4.067 20 C -0.202 4.202 21 C 0.204 3.796 22 N -0.645 5.645 23 C 0.088 3.912 24 C 0.091 3.909 25 C -0.199 4.199 26 C -0.066 4.066 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.407 0.593 31 H 0.409 0.591 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.268 0.732 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.135 0.865 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 -11.971 35.279 37.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.106 3.894 3 H 0.088 0.912 4 N -0.383 5.383 5 C 0.398 3.602 6 O -0.521 6.521 7 N -0.388 5.388 8 C 0.040 3.960 9 C -0.049 4.049 10 C -0.577 4.577 11 H 0.047 0.953 12 C -0.195 4.195 13 N -0.591 5.591 14 Si 0.783 3.217 15 H -0.190 1.190 16 H -0.213 1.213 17 H -0.160 1.160 18 C -0.159 4.159 19 C -0.086 4.086 20 C -0.224 4.224 21 C 0.101 3.899 22 N -0.356 5.356 23 C -0.055 4.055 24 C -0.051 4.051 25 C -0.222 4.222 26 C -0.085 4.085 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.245 0.755 31 H 0.245 0.755 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.153 0.847 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.240 -11.017 35.242 36.991 hybrid contribution 0.359 -0.824 -0.731 1.158 sum -1.881 -11.841 34.511 36.534 Atomic orbital electron populations 1.22122 0.94277 1.02660 1.01865 1.19446 0.93951 0.95372 0.80627 0.91199 1.45167 1.71300 1.14061 1.07778 1.16161 0.78151 0.84716 0.81135 1.90870 1.59156 1.16604 1.85443 1.45130 1.70455 1.14429 1.08813 1.20862 0.99220 0.94497 0.81386 1.19640 0.97305 0.95648 0.92302 1.21253 1.44528 0.97139 0.94747 0.95324 1.26103 0.94613 1.04318 0.94441 1.70080 1.47982 1.39318 1.01689 0.85512 0.78453 0.78134 0.79596 1.18963 1.21292 1.15992 1.19554 1.06628 0.94205 0.95536 1.20894 0.95470 1.00074 0.92156 1.20818 1.08650 0.92590 1.00374 1.18064 0.92718 0.91790 0.87299 1.46592 1.69325 1.06050 1.13679 1.21806 0.99637 0.96897 0.87164 1.21731 1.01664 0.78442 1.03297 1.20785 1.07599 1.00228 0.93544 1.20804 0.96660 0.93241 0.97756 0.94230 0.91334 0.90407 0.75535 0.75487 0.94081 0.94211 0.94526 0.94569 0.92357 0.85326 0.84660 0.92970 0.89941 0.91312 0.92758 0.89102 0.92623 0.84738 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.46 71.98 0.68 -2.58 16 2 C 0.21 4.91 2.77 44.24 0.12 5.03 16 3 H 0.07 1.95 7.43 -2.39 -0.02 1.94 16 4 N -0.73 -17.96 5.03 -461.43 -2.32 -20.28 16 5 C 0.70 24.09 8.53 179.05 1.53 25.62 16 6 O -0.64 -28.08 16.01 -3.99 -0.06 -28.14 16 7 N -0.73 -24.43 5.56 -478.54 -2.66 -27.10 16 8 C 0.16 7.03 5.61 86.38 0.48 7.52 16 9 C -0.01 -0.50 4.16 29.85 0.12 -0.38 16 10 C -0.54 -31.24 9.66 25.60 0.25 -30.99 16 11 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 12 C 0.00 0.13 5.47 84.66 0.46 0.59 16 13 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 14 Si 0.96 42.73 27.47 68.60 1.88 44.61 16 15 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 16 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 18 C -0.16 -3.02 4.96 -19.84 -0.10 -3.12 16 19 C -0.07 -1.22 9.66 22.25 0.21 -1.00 16 20 C -0.20 -3.32 9.21 22.40 0.21 -3.11 16 21 C 0.20 3.29 6.55 38.22 0.25 3.54 16 22 N -0.65 -7.78 3.41 -747.26 -2.55 -10.33 16 23 C 0.09 0.68 10.16 127.77 1.30 1.98 16 24 C 0.09 0.70 9.40 127.77 1.20 1.90 16 25 C -0.20 -3.12 9.31 22.40 0.21 -2.91 16 26 C -0.07 -1.09 9.04 22.25 0.20 -0.88 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.41 7.50 6.88 -92.70 -0.64 6.86 16 31 H 0.41 10.58 8.49 -92.71 -0.79 9.79 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 35 H 0.04 1.52 7.57 -2.38 -0.02 1.50 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.13 2.10 8.03 -2.91 -0.02 2.08 16 38 H 0.14 1.74 6.14 -2.91 -0.02 1.73 16 39 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 0.36 7.92 -2.38 -0.02 0.34 16 41 H 0.07 0.54 6.20 -2.39 -0.01 0.53 16 42 H 0.05 0.43 7.93 -2.39 -0.02 0.41 16 43 H 0.09 0.34 7.80 -2.39 -0.02 0.32 16 44 H 0.06 0.41 7.97 -2.39 -0.02 0.39 16 45 H 0.13 1.64 6.73 -2.92 -0.02 1.62 16 46 H 0.13 1.73 6.91 -2.91 -0.02 1.71 16 Total: -1.00 -76.82 374.49 1.23 -75.59 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.49 Total: 24.02 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 7.13 Total: 1.20 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -7.23 Total: -117.28 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.06 Total: -28.14 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.61 kcal Total: -76.82 1.23 -75.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773439708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.743 kcal (2) G-P(sol) polarization free energy of solvation -76.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds