Wall clock time and date at job start Tue Mar 31 2020 08:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 O 1.42899 * 109.47405 * 305.00138 * 4 2 1 6 6 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 7 7 C 1.46510 * 119.99910 * 240.00066 * 6 2 1 8 8 N 1.40098 * 120.00396 * 60.00198 * 6 2 1 9 9 C 1.29747 * 120.00065 * 180.02562 * 8 6 2 10 10 C 1.47467 * 119.99778 * 179.97438 * 9 8 6 11 11 C 1.39727 * 120.08226 * 359.72340 * 10 9 8 12 12 C 1.37783 * 119.91872 * 179.78546 * 11 10 9 13 13 C 1.39057 * 120.08102 * 0.46807 * 12 11 10 14 14 N 1.39597 * 119.91975 * 179.76274 * 13 12 11 15 15 C 1.46496 * 119.99848 * 180.02562 * 14 13 12 16 16 C 1.46498 * 119.99730 * 0.02562 * 14 13 12 17 17 C 1.50695 * 109.47303 * 90.00093 * 16 14 13 18 18 H 1.08002 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00108 * 179.97438 * 17 16 14 20 20 N 1.31517 * 120.00017 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99912 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47489 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47305 * 119.99979 * 21 19 17 24 24 H 1.48506 * 109.47336 * 239.99617 * 21 19 17 25 25 C 1.39049 * 120.16253 * 359.78961 * 13 12 11 26 26 C 1.37787 * 120.08057 * 359.97017 * 25 13 12 27 27 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46642 * 65.00413 * 4 2 1 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 0.96699 * 114.00112 * 180.02562 * 5 4 2 33 33 H 1.08999 * 109.47096 * 89.99783 * 7 6 2 34 34 H 1.09001 * 109.46763 * 210.00177 * 7 6 2 35 35 H 1.09005 * 109.46576 * 330.00159 * 7 6 2 36 36 H 1.07998 * 120.00367 * 359.97438 * 9 8 6 37 37 H 1.07998 * 120.03907 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.96078 * 180.22995 * 12 11 10 39 39 H 1.09004 * 109.46929 * 90.00505 * 15 14 13 40 40 H 1.09000 * 109.47061 * 209.99811 * 15 14 13 41 41 H 1.08999 * 109.47265 * 330.00004 * 15 14 13 42 42 H 1.09001 * 109.47007 * 209.99983 * 16 14 13 43 43 H 1.08997 * 109.47359 * 329.99667 * 16 14 13 44 44 H 0.97001 * 119.99626 * 179.97438 * 20 19 17 45 45 H 1.07993 * 119.96293 * 179.97438 * 25 13 12 46 46 H 1.07997 * 120.04088 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3094 6 7 2.0183 -0.6906 1.1962 7 6 2.8605 0.0214 2.1606 8 7 1.6799 -2.0319 1.4179 9 6 2.1119 -2.6434 2.4776 10 6 1.7552 -4.0551 2.7112 11 6 0.9473 -4.7341 1.7954 12 6 0.6197 -6.0543 2.0148 13 6 1.0841 -6.7082 3.1508 14 7 0.7460 -8.0444 3.3722 15 6 1.2338 -8.7347 4.5686 16 6 -0.0965 -8.7562 2.4080 17 6 0.7745 -9.4114 1.3673 18 1 1.8483 -9.3076 1.4186 19 6 0.2006 -10.1433 0.3495 20 7 -1.1070 -10.2702 0.2872 21 14 1.2802 -10.9549 -0.9409 22 1 2.7064 -10.6634 -0.6476 23 1 1.0607 -12.4234 -0.9176 24 1 0.9318 -10.4236 -2.2832 25 6 1.8838 -6.0342 4.0670 26 6 2.2196 -4.7153 3.8518 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7517 -0.1583 -2.1369 31 1 3.1264 -0.7995 -1.2055 32 1 1.7507 -2.5465 -2.0776 33 1 2.2303 0.4946 2.9136 34 1 3.5361 -0.6846 2.6437 35 1 3.4418 0.7838 1.6419 36 1 2.7328 -2.1186 3.1885 37 1 0.5833 -4.2258 0.9148 38 1 -0.0017 -6.5809 1.3055 39 1 0.5157 -8.6087 5.3790 40 1 1.3543 -9.7962 4.3519 41 1 2.1942 -8.3131 4.8653 42 1 -0.6783 -9.5180 2.9268 43 1 -0.7716 -8.0501 1.9246 44 1 -1.5107 -10.7848 -0.4291 45 1 2.2423 -6.5450 4.9484 46 1 2.8405 -4.1923 4.5641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842544708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:10 Heat of formation + Delta-G solvation = 18.371849 kcal Electronic energy + Delta-G solvation = -24717.945157 eV Core-core repulsion = 21222.340992 eV Total energy + Delta-G solvation = -3495.604165 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32714 -39.12790 -37.61882 -36.80071 -34.88186 -34.27956 -31.91182 -31.80295 -30.25468 -29.45424 -27.35524 -27.18574 -26.23500 -24.67259 -23.08133 -22.62065 -21.19362 -19.83441 -18.62077 -18.40902 -18.04976 -17.66735 -16.77732 -16.65483 -15.92997 -15.87830 -15.71102 -15.31282 -15.15655 -14.67434 -14.47564 -14.37127 -14.23031 -14.01969 -13.55619 -13.53314 -13.30602 -13.16273 -13.00612 -12.74859 -12.66575 -12.53254 -12.48854 -12.38302 -12.25309 -12.08831 -11.88682 -11.64549 -11.41868 -10.80034 -10.63310 -10.48668 -10.44500 -9.65418 -8.75530 -8.26114 -7.55983 -6.35703 0.44767 0.77982 1.36826 1.38492 1.50890 1.92539 1.95590 2.36098 2.65462 3.07846 3.30708 3.54144 3.83072 4.05056 4.11716 4.17916 4.26063 4.31593 4.46526 4.48514 4.54347 4.58703 4.65174 4.70262 4.76276 4.79610 4.82840 4.85931 4.89659 4.94866 4.99110 5.04328 5.10945 5.19959 5.26929 5.40798 5.53340 5.61885 5.72001 5.80207 5.97700 6.08901 6.19694 6.38419 6.51764 6.84662 6.95445 7.01237 7.35991 7.63819 8.85142 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.003424 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.608145 B = 8175.661434 C = 9538.844842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.181 3.819 3 H 0.127 0.873 4 C 0.065 3.935 5 O -0.573 6.573 6 N -0.553 5.553 7 C 0.067 3.933 8 N -0.227 5.227 9 C 0.053 3.947 10 C -0.120 4.120 11 C -0.045 4.045 12 C -0.219 4.219 13 C 0.220 3.780 14 N -0.628 5.628 15 C 0.096 3.904 16 C 0.265 3.735 17 C -0.540 4.540 18 H 0.050 0.950 19 C 0.011 3.989 20 N -0.927 5.927 21 Si 0.962 3.038 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.278 1.278 25 C -0.215 4.215 26 C -0.042 4.042 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.381 0.619 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.011 0.989 43 H 0.009 0.991 44 H 0.267 0.733 45 H 0.143 0.857 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.540 21.865 3.540 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.077 3.923 3 H 0.145 0.855 4 C -0.014 4.014 5 O -0.378 6.378 6 N -0.370 5.370 7 C -0.078 4.078 8 N -0.032 5.032 9 C -0.157 4.157 10 C -0.124 4.124 11 C -0.066 4.066 12 C -0.242 4.242 13 C 0.114 3.886 14 N -0.336 5.336 15 C -0.047 4.047 16 C 0.143 3.857 17 C -0.579 4.579 18 H 0.068 0.932 19 C -0.188 4.188 20 N -0.567 5.567 21 Si 0.787 3.213 22 H -0.194 1.194 23 H -0.198 1.198 24 H -0.204 1.204 25 C -0.237 4.237 26 C -0.063 4.063 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.228 0.772 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.029 0.971 43 H 0.027 0.973 44 H 0.076 0.924 45 H 0.161 0.839 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.566 21.900 3.166 23.727 hybrid contribution 0.685 -0.899 -0.888 1.437 sum 9.251 21.001 2.278 23.061 Atomic orbital electron populations 1.21969 0.95733 1.01610 1.01582 1.21078 0.94332 0.94787 0.82066 0.85524 1.22664 0.96179 0.84722 0.97864 1.86706 1.72536 1.27721 1.50870 1.50328 1.56609 1.05213 1.24847 1.21987 0.94759 0.97297 0.93757 1.74532 1.15847 0.94556 1.18249 1.23952 1.01698 0.93952 0.96079 1.18198 1.04456 0.92214 0.97575 1.20964 0.95261 0.92351 0.98016 1.20676 1.07888 0.96127 0.99488 1.18319 0.92532 0.84269 0.93489 1.46994 1.53844 1.08532 1.24187 1.21652 0.99607 0.97153 0.86259 1.18788 0.89437 0.90537 0.86929 1.21817 0.93511 1.31755 1.10827 0.93152 1.25793 0.96289 0.96860 0.99830 1.70051 1.10845 1.41813 1.33993 0.85444 0.78920 0.78290 0.78648 1.19427 1.19846 1.20411 1.20744 1.05261 0.96044 1.01696 1.21112 0.96843 0.92997 0.95381 0.93285 0.90604 0.94153 0.91255 0.94345 0.77223 0.93462 0.91779 0.89228 0.85532 0.86922 0.88854 0.92732 0.92490 0.89892 0.97091 0.97294 0.92428 0.83917 0.82568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.12 71.98 0.66 -2.51 16 2 C 0.18 3.35 3.32 44.99 0.15 3.50 16 3 H 0.13 1.41 7.79 -2.39 -0.02 1.39 16 4 C 0.06 1.20 6.85 71.98 0.49 1.69 16 5 O -0.57 -14.68 11.52 -148.98 -1.72 -16.40 16 6 N -0.55 -12.66 3.63 -516.48 -1.87 -14.53 16 7 C 0.07 1.04 10.14 127.77 1.30 2.33 16 8 N -0.23 -6.86 8.91 -52.18 -0.46 -7.33 16 9 C 0.05 1.51 10.15 87.43 0.89 2.40 16 10 C -0.12 -3.96 5.87 -20.12 -0.12 -4.07 16 11 C -0.04 -1.79 9.57 22.52 0.22 -1.57 16 12 C -0.22 -9.89 9.19 22.36 0.21 -9.68 16 13 C 0.22 9.26 6.56 38.30 0.25 9.51 16 14 N -0.63 -27.99 2.99 -726.38 -2.17 -30.17 16 15 C 0.10 3.31 10.18 127.77 1.30 4.61 16 16 C 0.26 14.26 4.91 85.63 0.42 14.68 16 17 C -0.54 -31.03 9.39 25.60 0.24 -30.79 16 18 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 19 C 0.01 0.65 5.46 84.65 0.46 1.11 16 20 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 21 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 C -0.21 -7.07 9.19 22.36 0.21 -6.86 16 26 C -0.04 -1.22 9.78 22.53 0.22 -1.00 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.04 1.16 7.42 -2.39 -0.02 1.15 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.38 7.24 9.12 -74.06 -0.68 6.56 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.99 6.19 -2.39 -0.01 0.97 16 35 H 0.09 0.92 7.92 -2.38 -0.02 0.90 16 36 H 0.13 2.79 5.91 -2.91 -0.02 2.77 16 37 H 0.11 4.64 7.55 -2.91 -0.02 4.62 16 38 H 0.09 4.84 6.12 -2.91 -0.02 4.82 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 41 H 0.08 2.37 6.18 -2.39 -0.01 2.35 16 42 H 0.01 0.62 8.07 -2.39 -0.02 0.60 16 43 H 0.01 0.53 6.18 -2.39 -0.01 0.52 16 44 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.14 3.86 6.12 -2.91 -0.02 3.85 16 46 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -73.02 376.52 3.27 -69.75 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.30 Total: 23.58 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 6.89 Total: -16.65 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -4.22 Total: -107.28 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.72 Total: -16.40 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.02 3.27 -69.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842544708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.118 kcal (2) G-P(sol) polarization free energy of solvation -73.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds