Wall clock time and date at job start Tue Mar 31 2020 08:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46965 * 2 1 4 4 C 1.36440 * 124.85054 * 265.01873 * 3 2 1 5 5 C 1.34485 * 108.85727 * 179.72875 * 4 3 2 6 6 C 1.46691 * 106.33184 * 0.38257 * 5 4 3 7 7 C 1.47259 * 126.94355 * 179.88594 * 6 5 4 8 8 O 1.21631 * 119.99693 * 179.68381 * 7 6 5 9 9 N 1.34773 * 120.00191 * 359.68178 * 7 6 5 10 10 C 1.46504 * 120.00257 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47171 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.91254 * 57.45208 * 11 10 9 13 13 C 1.55164 * 111.00283 * 181.35255 * 11 10 9 14 14 C 1.54322 * 102.93965 * 153.57810 * 13 11 10 15 15 N 1.47020 * 107.27467 * 337.80777 * 14 13 11 16 16 C 1.36939 * 125.65087 * 179.20508 * 15 14 13 17 17 H 1.07997 * 119.99591 * 174.35340 * 16 15 14 18 18 C 1.38813 * 119.99732 * 354.35924 * 16 15 14 19 19 N 1.31615 * 120.00275 * 7.02877 * 18 16 15 20 20 Si 1.86799 * 119.99623 * 187.02776 * 18 16 15 21 21 H 1.48500 * 109.47076 * 94.98809 * 20 18 16 22 22 H 1.48498 * 109.46809 * 214.98525 * 20 18 16 23 23 H 1.48499 * 109.47087 * 334.98434 * 20 18 16 24 24 C 1.47429 * 108.70230 * 358.93934 * 15 14 13 25 25 C 1.34662 * 124.84765 * 85.00392 * 3 2 1 26 26 C 1.50689 * 125.80235 * 0.03497 * 25 3 2 27 27 H 1.08998 * 109.47115 * 300.00063 * 1 2 3 28 28 H 1.09001 * 109.47123 * 59.99734 * 1 2 3 29 29 H 1.08996 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47115 * 239.99937 * 2 1 3 31 31 H 1.09001 * 109.47123 * 120.00266 * 2 1 3 32 32 H 1.07998 * 125.57716 * 0.02562 * 4 3 2 33 33 H 1.07997 * 126.83963 * 180.25692 * 5 4 3 34 34 H 0.96996 * 120.00262 * 0.02562 * 9 7 6 35 35 H 1.09005 * 109.46528 * 60.00507 * 10 9 7 36 36 H 1.08999 * 109.47234 * 300.00544 * 10 9 7 37 37 H 1.08996 * 110.71724 * 271.94416 * 13 11 10 38 38 H 1.08993 * 110.71742 * 35.04068 * 13 11 10 39 39 H 1.09000 * 109.88266 * 218.38951 * 14 13 11 40 40 H 1.09003 * 109.88108 * 97.22299 * 14 13 11 41 41 H 0.96992 * 120.00186 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.36346 * 142.96798 * 24 15 14 43 43 H 1.08999 * 110.37028 * 265.18056 * 24 15 14 44 44 H 1.09002 * 109.47829 * 270.00132 * 26 25 3 45 45 H 1.09004 * 109.47612 * 30.00556 * 26 25 3 46 46 H 1.09004 * 109.47228 * 150.00529 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3699 2.0840 -1.1155 5 6 2.7648 3.3155 -0.7469 6 6 2.6526 3.3644 0.7150 7 6 2.9737 4.5048 1.5896 8 8 2.8274 4.4081 2.7932 9 7 3.4297 5.6555 1.0565 10 6 3.7485 6.7902 1.9266 11 6 4.2412 7.9626 1.0759 12 1 3.4960 8.2434 0.3316 13 6 4.6218 9.1747 1.9666 14 6 5.6711 9.9160 1.1115 15 7 6.2293 8.9409 0.1633 16 6 7.1822 9.2043 -0.7841 17 1 7.5943 8.3990 -1.3740 18 6 7.6185 10.5065 -0.9863 19 7 7.2217 11.4665 -0.1781 20 14 8.7690 10.8963 -2.4054 21 1 7.9759 11.3569 -3.5734 22 1 9.7147 11.9657 -1.9965 23 1 9.5308 9.6762 -2.7745 24 6 5.5979 7.6309 0.4058 25 6 2.1840 2.1388 1.1009 26 6 1.9016 1.7091 2.5174 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3322 1.7135 -2.1292 33 1 3.0999 4.1098 -1.3973 34 1 3.5460 5.7328 0.0967 35 1 4.5276 6.4997 2.6316 36 1 2.8555 7.0898 2.4751 37 1 3.7536 9.8086 2.1468 38 1 5.0553 8.8398 2.9089 39 1 6.4626 10.3057 1.7516 40 1 5.1960 10.7322 0.5672 41 1 7.5263 12.3764 -0.3195 42 1 5.4375 7.1069 -0.5365 43 1 6.2155 7.0297 1.0730 44 1 0.8681 1.9462 2.7699 45 1 2.0609 0.6347 2.6098 46 1 2.5715 2.2355 3.1972 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028756721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:03 Heat of formation + Delta-G solvation = 25.619858 kcal Electronic energy + Delta-G solvation = -24684.844235 eV Core-core repulsion = 21189.554367 eV Total energy + Delta-G solvation = -3495.289868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54303 -39.06813 -37.46937 -34.48239 -34.35073 -32.40959 -31.69592 -30.11070 -29.38022 -28.14710 -26.52252 -25.43358 -24.21993 -23.23774 -21.97975 -20.30876 -19.82535 -19.72511 -18.84271 -17.52531 -16.73868 -16.11863 -15.63044 -15.42089 -15.12883 -14.86302 -14.58324 -14.19140 -13.72377 -13.63651 -13.49431 -13.17681 -13.06360 -12.87649 -12.77999 -12.49652 -12.25231 -12.16686 -11.91847 -11.73260 -11.66759 -11.59033 -11.26820 -10.84943 -10.76732 -10.30117 -10.08381 -9.92725 -9.79049 -9.62127 -9.53303 -8.86455 -8.64435 -8.53174 -8.22424 -6.77515 -5.68252 -3.00179 1.73948 2.32839 2.56638 3.42666 3.47681 3.49909 3.62747 3.72189 4.22113 4.48743 4.53407 4.54865 4.69756 4.78693 5.06386 5.08000 5.11769 5.19287 5.33558 5.35505 5.43646 5.52460 5.52949 5.56127 5.60401 5.76547 5.81316 5.87164 6.00053 6.07768 6.16869 6.22377 6.42982 6.57414 6.62063 6.65914 6.68605 6.82004 6.94790 7.00998 7.09039 7.60673 7.69809 7.86788 7.87703 8.30857 8.57273 9.26468 9.87249 10.54409 11.44025 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023377 B = 0.002662 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.462652 B =10514.335939 C =11462.806797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.443 5.443 4 C -0.020 4.020 5 C -0.165 4.165 6 C -0.234 4.234 7 C 0.589 3.411 8 O -0.559 6.559 9 N -0.720 5.720 10 C 0.135 3.865 11 C -0.117 4.117 12 H 0.079 0.921 13 C -0.135 4.135 14 C 0.176 3.824 15 N -0.607 5.607 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.143 3.857 25 C 0.103 3.897 26 C -0.092 4.092 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.252 0.748 42 H 0.036 0.964 43 H 0.019 0.981 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.512 -22.626 0.658 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.120 5.120 4 C -0.146 4.146 5 C -0.189 4.189 6 C -0.244 4.244 7 C 0.378 3.622 8 O -0.440 6.440 9 N -0.370 5.370 10 C 0.012 3.988 11 C -0.137 4.137 12 H 0.097 0.903 13 C -0.174 4.174 14 C 0.052 3.948 15 N -0.333 5.333 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.016 3.984 25 C -0.013 4.013 26 C -0.149 4.149 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.586 -22.815 1.403 27.115 hybrid contribution 0.713 0.349 -1.454 1.657 sum -13.873 -22.466 -0.051 26.404 Atomic orbital electron populations 1.22171 0.94230 1.03015 1.03422 1.21873 0.95654 0.80590 1.04449 1.43722 1.50544 1.11864 1.05898 1.21656 1.08429 0.93273 0.91197 1.22065 1.06220 0.97217 0.93362 1.20171 1.15754 0.94986 0.93483 1.17331 0.76244 0.81745 0.86876 1.90705 1.55182 1.83078 1.15017 1.45827 1.66937 1.13111 1.11174 1.21342 0.99990 0.84783 0.92723 1.22600 0.98468 0.94532 0.98078 0.90284 1.22849 0.99953 0.96188 0.98362 1.21153 0.92649 0.90930 0.90101 1.44497 1.45666 1.04176 1.38968 1.19062 1.13403 0.92682 1.10460 0.90488 1.24824 1.00677 0.95782 0.99196 1.69979 1.48639 1.00464 1.37692 0.86126 0.79967 0.77737 0.82139 1.21658 1.21811 1.20662 1.21563 0.90595 0.89536 0.96675 1.20269 1.01035 0.90708 0.89309 1.20548 1.03626 1.00758 0.90010 0.91695 0.91739 0.90691 0.88973 0.89249 0.81762 0.83599 0.76468 0.91539 0.91869 0.92041 0.92233 0.94186 0.93407 0.93796 0.94614 0.96342 0.90705 0.92206 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.24 37.16 0.38 -0.40 16 2 C 0.10 0.51 6.45 -4.04 -0.03 0.48 16 3 N -0.44 -4.01 2.69 -112.52 -0.30 -4.31 16 4 C -0.02 -0.18 11.33 -16.83 -0.19 -0.37 16 5 C -0.16 -1.85 10.56 -37.50 -0.40 -2.25 16 6 C -0.23 -3.16 6.29 -103.35 -0.65 -3.81 16 7 C 0.59 9.26 7.81 -12.60 -0.10 9.16 16 8 O -0.56 -10.15 14.81 5.25 0.08 -10.07 16 9 N -0.72 -10.59 5.40 -61.43 -0.33 -10.93 16 10 C 0.14 2.12 5.12 -4.04 -0.02 2.10 16 11 C -0.12 -2.04 3.10 -88.47 -0.27 -2.32 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.13 -2.54 6.42 -24.89 -0.16 -2.70 16 14 C 0.18 4.36 5.38 -3.07 -0.02 4.34 16 15 N -0.61 -15.75 3.39 -170.07 -0.58 -16.33 16 16 C -0.23 -6.45 10.26 -15.06 -0.15 -6.60 16 17 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 18 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 19 N -0.92 -27.43 10.36 55.49 0.57 -26.86 16 20 Si 0.91 22.33 29.56 -169.99 -5.02 17.30 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 C 0.14 2.97 6.41 -2.53 -0.02 2.95 16 25 C 0.10 1.19 6.89 -81.89 -0.56 0.63 16 26 C -0.09 -0.91 9.52 36.00 0.34 -0.57 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.33 8.11 -51.93 -0.42 -0.09 16 31 H 0.09 0.39 7.05 -51.93 -0.37 0.02 16 32 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.15 1.44 7.70 -52.49 -0.40 1.03 16 34 H 0.40 5.30 7.46 -40.82 -0.30 5.00 16 35 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 39 H 0.04 1.09 7.62 -51.93 -0.40 0.70 16 40 H 0.05 1.30 7.29 -51.93 -0.38 0.92 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.43 7.02 -51.93 -0.36 0.07 16 46 H 0.10 1.24 6.47 -51.93 -0.34 0.90 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -34.19 371.00 -9.51 -43.70 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.58 Total: 1.61 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.94 Total: 0.30 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.64 Total: -58.43 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.19 -9.51 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028756721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.320 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds