Wall clock time and date at job start Tue Mar 31 2020 08:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00017 * 2 1 4 4 H 1.09008 * 109.46909 * 30.00527 * 3 2 1 5 5 C 1.52993 * 109.47622 * 270.00182 * 3 2 1 6 6 N 1.46905 * 109.47039 * 65.00060 * 5 3 2 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 3 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46923 * 299.99733 * 8 7 6 10 10 C 1.52999 * 109.46998 * 59.99872 * 8 7 6 11 11 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 12 12 C 1.50701 * 109.46820 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00070 * 0.02562 * 12 11 8 14 14 C 1.37878 * 120.00019 * 179.97438 * 12 11 8 15 15 N 1.31515 * 120.00228 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00068 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46757 * 60.00769 * 16 14 12 18 18 H 1.48495 * 109.46824 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47105 * 300.00477 * 16 14 12 20 20 C 1.53002 * 109.47077 * 149.99846 * 3 2 1 21 21 C 1.50706 * 109.47407 * 295.00612 * 20 3 2 22 22 C 1.38236 * 119.99562 * 269.72564 * 21 20 3 23 23 C 1.38233 * 119.99310 * 179.76498 * 22 21 20 24 24 C 1.38232 * 120.00508 * 0.50448 * 23 22 21 25 25 C 1.38239 * 119.99724 * 359.74739 * 24 23 22 26 26 C 1.38228 * 120.00256 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47011 * 300.00079 * 1 2 3 29 29 H 1.09008 * 109.46840 * 59.98998 * 1 2 3 30 30 H 1.09001 * 109.47393 * 305.00341 * 5 3 2 31 31 H 1.08998 * 109.47408 * 184.99987 * 5 3 2 32 32 H 1.00901 * 110.99869 * 56.04956 * 6 5 3 33 33 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 34 34 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 35 35 H 1.09002 * 109.47301 * 60.00027 * 9 8 7 36 36 H 1.09001 * 109.47017 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.47249 * 300.00302 * 9 8 7 38 38 H 1.09001 * 109.46999 * 60.00126 * 10 8 7 39 39 H 1.09001 * 109.46478 * 179.97438 * 10 8 7 40 40 H 1.08993 * 109.47197 * 299.99817 * 10 8 7 41 41 H 1.08993 * 109.47740 * 299.99810 * 11 8 7 42 42 H 1.09005 * 109.47573 * 59.99976 * 11 8 7 43 43 H 0.97002 * 120.00555 * 179.97438 * 15 14 12 44 44 H 1.09002 * 109.46730 * 55.00356 * 20 3 2 45 45 H 1.08994 * 109.47589 * 175.00140 * 20 3 2 46 46 H 1.07998 * 120.00132 * 359.97438 * 22 21 20 47 47 H 1.07999 * 119.99796 * 180.23098 * 23 22 21 48 48 H 1.07998 * 120.00680 * 179.72623 * 24 23 22 49 49 H 1.08003 * 119.99938 * 179.97438 * 25 24 23 50 50 H 1.07997 * 120.00629 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5140 5 6 2.2177 1.7715 -1.4424 6 7 0.9129 1.9271 -2.0992 7 6 1.0732 2.3740 -3.4893 8 6 -0.3040 2.5250 -4.1385 9 6 -1.0287 1.1777 -4.1163 10 6 -1.1234 3.5577 -3.3620 11 6 -0.1370 2.9910 -5.5862 12 6 -1.4935 3.1391 -6.2258 13 1 -2.3854 2.9229 -5.6566 14 6 -1.5958 3.5517 -7.5374 15 7 -0.5097 3.8155 -8.2305 16 14 -3.2773 3.7360 -8.3301 17 1 -4.0729 4.7377 -7.5759 18 1 -3.1152 4.1882 -9.7352 19 1 -3.9803 2.4281 -8.3095 20 6 3.3589 1.2633 0.7213 21 6 3.1417 0.9235 2.1734 22 6 2.9465 1.9327 3.0976 23 6 2.7424 1.6208 4.4287 24 6 2.7438 0.3002 4.8373 25 6 2.9442 -0.7088 3.9138 26 6 3.1426 -0.3972 2.5818 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 2.8099 1.0321 -1.9816 31 1 2.7414 2.7274 -1.4437 32 1 0.3208 2.5594 -1.5818 33 1 1.5891 3.3341 -3.5051 34 1 1.6573 1.6385 -4.0423 35 1 -1.1476 0.8460 -3.0848 36 1 -2.0097 1.2851 -4.5792 37 1 -0.4449 0.4419 -4.6695 38 1 -0.6070 4.5175 -3.3779 39 1 -2.1043 3.6655 -3.8249 40 1 -1.2423 3.2261 -2.3306 41 1 0.3791 3.9509 -5.6017 42 1 0.4470 2.2556 -6.1397 43 1 -0.5816 4.1054 -9.1534 44 1 3.9931 0.5051 0.2617 45 1 3.8428 2.2369 0.6445 46 1 2.9501 2.9647 2.7791 47 1 2.5861 2.4090 5.1502 48 1 2.5888 0.0567 5.8780 49 1 2.9458 -1.7405 4.2331 50 1 3.2996 -1.1854 1.8604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294917841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:40 Heat of formation + Delta-G solvation = -43.268729 kcal Electronic energy + Delta-G solvation = -25147.484376 eV Core-core repulsion = 21752.747618 eV Total energy + Delta-G solvation = -3394.736758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.68835 -38.40449 -37.21332 -34.30426 -33.36633 -32.11853 -31.05791 -29.66939 -27.05514 -26.36352 -26.33935 -26.00990 -24.21574 -22.73702 -22.28939 -21.65888 -20.93876 -17.89421 -17.00070 -16.85825 -16.24912 -15.75462 -15.40205 -15.16872 -15.02112 -14.70285 -14.50620 -13.97800 -13.60882 -13.55811 -13.35150 -13.07001 -12.96199 -12.56986 -12.53672 -12.17724 -12.05593 -11.90282 -11.83131 -11.41743 -11.19436 -11.08471 -11.00764 -10.89776 -10.78726 -10.73947 -10.49339 -10.26804 -10.14613 -9.70079 -9.50749 -9.08878 -9.03326 -8.88234 -8.76050 -8.31175 -8.04828 -5.95738 -3.95988 1.16717 1.23719 3.34722 3.39449 3.41522 3.57603 3.86635 4.29142 4.49292 4.60042 4.67881 4.81636 4.92039 5.04270 5.12004 5.19491 5.30227 5.34058 5.39838 5.49334 5.50301 5.54797 5.63324 5.71742 5.75184 5.79662 5.87936 5.90114 5.95708 6.00969 6.08940 6.24969 6.28117 6.33327 6.33558 6.47632 6.50658 6.66060 6.77791 6.82463 6.83321 7.20550 7.20708 7.25735 7.30946 7.38637 7.63488 7.70844 7.85893 8.04309 8.48559 9.09099 9.66655 11.15829 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.036498 B = 0.002322 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.981710 B =12055.833198 C =12185.347344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.102 3.898 4 H 0.056 0.944 5 C 0.034 3.966 6 N -0.683 5.683 7 C 0.071 3.929 8 C -0.058 4.058 9 C -0.115 4.115 10 C -0.128 4.128 11 C 0.034 3.966 12 C -0.507 4.507 13 H 0.058 0.942 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 C -0.080 4.080 21 C -0.075 4.075 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.099 4.099 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.334 0.666 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.012 0.988 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -5.657 24.202 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.043 3.957 4 H 0.074 0.926 5 C -0.095 4.095 6 N -0.314 5.314 7 C -0.058 4.058 8 C -0.058 4.058 9 C -0.172 4.172 10 C -0.186 4.186 11 C -0.004 4.004 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.118 4.118 21 C -0.075 4.075 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.117 4.117 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.153 0.847 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.102 0.898 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.598 -6.430 23.843 25.837 hybrid contribution -0.822 1.352 -0.450 1.645 sum 6.776 -5.078 23.393 24.879 Atomic orbital electron populations 1.22893 0.80801 1.02224 1.00831 1.87828 1.20061 1.26351 1.94955 1.22021 0.93819 0.85834 0.94018 0.92570 1.22566 0.92488 0.99731 0.94761 1.60608 1.12704 1.54418 1.03703 1.22118 0.98636 0.97535 0.87492 1.20623 0.91963 0.95412 0.97827 1.21597 1.00344 0.95897 0.99388 1.21769 1.01476 0.97945 0.97396 1.19115 0.97077 0.95940 0.88221 1.21192 0.92702 1.44264 0.96370 0.92376 1.25023 0.96220 0.95852 0.97541 1.69955 1.27502 1.46676 1.09606 0.86721 0.84844 0.78445 0.78354 1.20382 1.21457 1.20311 1.20720 0.96798 1.03039 0.91259 1.19799 0.99173 0.93457 0.95052 1.21068 1.00704 0.98926 0.93210 1.21096 1.00575 0.96485 0.95925 1.21122 1.00915 0.93088 0.99440 1.21163 1.00235 0.99175 0.93476 1.21088 0.98832 0.96074 0.95663 0.90688 0.95510 0.90934 0.90248 0.94895 0.84734 0.95915 0.91512 0.94022 0.92732 0.94145 0.94134 0.91700 0.94970 0.96964 0.96686 0.93114 0.89863 0.89756 0.86298 0.86340 0.86440 0.86285 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.69 101.05 1.08 1.42 16 2 O -0.37 -4.70 9.84 -35.23 -0.35 -5.04 16 3 C 0.10 1.10 2.40 -26.73 -0.06 1.04 16 4 H 0.06 0.60 7.79 -51.92 -0.40 0.20 16 5 C 0.03 0.41 5.35 -3.82 -0.02 0.39 16 6 N -0.68 -9.55 3.71 -113.78 -0.42 -9.97 16 7 C 0.07 1.20 4.65 -3.82 -0.02 1.18 16 8 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 9 C -0.11 -2.21 8.06 37.16 0.30 -1.91 16 10 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 11 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 12 C -0.51 -13.82 7.65 -34.44 -0.26 -14.09 16 13 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.08 -0.74 5.06 -27.88 -0.14 -0.89 16 21 C -0.07 -0.73 4.97 -104.62 -0.52 -1.25 16 22 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 23 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 24 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.10 -0.97 9.40 -39.58 -0.37 -1.34 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.29 8.09 -51.93 -0.42 -0.13 16 29 H 0.07 0.92 6.02 -51.92 -0.31 0.61 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.33 4.46 6.70 -39.29 -0.26 4.19 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.04 0.71 7.43 -51.93 -0.39 0.32 16 36 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 40 H 0.03 0.49 6.57 -51.93 -0.34 0.15 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 45 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 50 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -29.88 393.32 -9.74 -39.62 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -9.01 Total: 1.44 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.61 Total: -22.43 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.31 Total: -36.09 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.35 Total: -5.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.88 -9.74 -39.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294917841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.646 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds