Wall clock time and date at job start Tue Mar 31 2020 08:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00017 * 2 1 4 4 H 1.09008 * 109.46909 * 30.00527 * 3 2 1 5 5 C 1.52993 * 109.47622 * 270.00182 * 3 2 1 6 6 N 1.46905 * 109.47039 * 65.00060 * 5 3 2 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 3 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46923 * 299.99733 * 8 7 6 10 10 C 1.52999 * 109.46998 * 59.99872 * 8 7 6 11 11 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 12 12 C 1.50701 * 109.46820 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00070 * 0.02562 * 12 11 8 14 14 C 1.37878 * 120.00019 * 179.97438 * 12 11 8 15 15 N 1.31515 * 120.00228 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00068 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46757 * 60.00769 * 16 14 12 18 18 H 1.48495 * 109.46824 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47105 * 300.00477 * 16 14 12 20 20 C 1.53002 * 109.47077 * 149.99846 * 3 2 1 21 21 C 1.50706 * 109.47407 * 295.00612 * 20 3 2 22 22 C 1.38236 * 119.99562 * 269.72564 * 21 20 3 23 23 C 1.38233 * 119.99310 * 179.76498 * 22 21 20 24 24 C 1.38232 * 120.00508 * 0.50448 * 23 22 21 25 25 C 1.38239 * 119.99724 * 359.74739 * 24 23 22 26 26 C 1.38228 * 120.00256 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47011 * 300.00079 * 1 2 3 29 29 H 1.09008 * 109.46840 * 59.98998 * 1 2 3 30 30 H 1.09001 * 109.47393 * 305.00341 * 5 3 2 31 31 H 1.08998 * 109.47408 * 184.99987 * 5 3 2 32 32 H 1.00901 * 110.99869 * 56.04956 * 6 5 3 33 33 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 34 34 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 35 35 H 1.09002 * 109.47301 * 60.00027 * 9 8 7 36 36 H 1.09001 * 109.47017 * 180.02562 * 9 8 7 37 37 H 1.09005 * 109.47249 * 300.00302 * 9 8 7 38 38 H 1.09001 * 109.46999 * 60.00126 * 10 8 7 39 39 H 1.09001 * 109.46478 * 179.97438 * 10 8 7 40 40 H 1.08993 * 109.47197 * 299.99817 * 10 8 7 41 41 H 1.08993 * 109.47740 * 299.99810 * 11 8 7 42 42 H 1.09005 * 109.47573 * 59.99976 * 11 8 7 43 43 H 0.97002 * 120.00555 * 179.97438 * 15 14 12 44 44 H 1.09002 * 109.46730 * 55.00356 * 20 3 2 45 45 H 1.08994 * 109.47589 * 175.00140 * 20 3 2 46 46 H 1.07998 * 120.00132 * 359.97438 * 22 21 20 47 47 H 1.07999 * 119.99796 * 180.23098 * 23 22 21 48 48 H 1.07998 * 120.00680 * 179.72623 * 24 23 22 49 49 H 1.08003 * 119.99938 * 179.97438 * 25 24 23 50 50 H 1.07997 * 120.00629 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5140 5 6 2.2177 1.7715 -1.4424 6 7 0.9129 1.9271 -2.0992 7 6 1.0732 2.3740 -3.4893 8 6 -0.3040 2.5250 -4.1385 9 6 -1.0287 1.1777 -4.1163 10 6 -1.1234 3.5577 -3.3620 11 6 -0.1370 2.9910 -5.5862 12 6 -1.4935 3.1391 -6.2258 13 1 -2.3854 2.9229 -5.6566 14 6 -1.5958 3.5517 -7.5374 15 7 -0.5097 3.8155 -8.2305 16 14 -3.2773 3.7360 -8.3301 17 1 -4.0729 4.7377 -7.5759 18 1 -3.1152 4.1882 -9.7352 19 1 -3.9803 2.4281 -8.3095 20 6 3.3589 1.2633 0.7213 21 6 3.1417 0.9235 2.1734 22 6 2.9465 1.9327 3.0976 23 6 2.7424 1.6208 4.4287 24 6 2.7438 0.3002 4.8373 25 6 2.9442 -0.7088 3.9138 26 6 3.1426 -0.3972 2.5818 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 2.8099 1.0321 -1.9816 31 1 2.7414 2.7274 -1.4437 32 1 0.3208 2.5594 -1.5818 33 1 1.5891 3.3341 -3.5051 34 1 1.6573 1.6385 -4.0423 35 1 -1.1476 0.8460 -3.0848 36 1 -2.0097 1.2851 -4.5792 37 1 -0.4449 0.4419 -4.6695 38 1 -0.6070 4.5175 -3.3779 39 1 -2.1043 3.6655 -3.8249 40 1 -1.2423 3.2261 -2.3306 41 1 0.3791 3.9509 -5.6017 42 1 0.4470 2.2556 -6.1397 43 1 -0.5816 4.1054 -9.1534 44 1 3.9931 0.5051 0.2617 45 1 3.8428 2.2369 0.6445 46 1 2.9501 2.9647 2.7791 47 1 2.5861 2.4090 5.1502 48 1 2.5888 0.0567 5.8780 49 1 2.9458 -1.7405 4.2331 50 1 3.2996 -1.1854 1.8604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294917841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:40 Heat of formation + Delta-G solvation = -58.198083 kcal Electronic energy + Delta-G solvation = -25148.131761 eV Core-core repulsion = 21752.747618 eV Total energy + Delta-G solvation = -3395.384143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42526 -39.45877 -38.53076 -35.63698 -34.47159 -33.81532 -31.69460 -30.61648 -28.95068 -27.89239 -27.51970 -26.93597 -25.69434 -23.89189 -23.37852 -22.61197 -21.68509 -19.50798 -18.32817 -17.78842 -17.65683 -16.81562 -16.52397 -16.31413 -16.03921 -15.75689 -15.61881 -15.26824 -15.07315 -14.63437 -14.22153 -14.20187 -14.03961 -13.89267 -13.71156 -13.46374 -13.45918 -13.00253 -12.82696 -12.76444 -12.72075 -12.43394 -12.33222 -12.22940 -12.12164 -11.92485 -11.84930 -11.76405 -11.63386 -11.36646 -10.86400 -10.81471 -10.49798 -10.38240 -9.74331 -9.51552 -9.20486 -8.13574 -6.20651 0.50988 0.58000 1.40899 1.43218 1.50427 2.43809 2.88200 3.02566 3.20085 3.25840 3.79012 4.04069 4.12361 4.18489 4.21789 4.22824 4.29071 4.36991 4.40111 4.42084 4.54397 4.63168 4.65042 4.71192 4.75657 4.82326 4.85995 4.87644 4.91068 4.95245 5.07411 5.11516 5.15769 5.21857 5.24482 5.25249 5.26421 5.52159 5.54853 5.59158 5.64261 5.66038 5.69456 5.80326 5.88104 5.93014 6.05752 6.20071 6.36859 6.41826 6.54257 6.94341 7.46509 8.98474 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.036498 B = 0.002322 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.981710 B =12055.833198 C =12185.347344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.388 6.388 3 C 0.108 3.892 4 H 0.062 0.938 5 C 0.036 3.964 6 N -0.678 5.678 7 C 0.084 3.916 8 C -0.054 4.054 9 C -0.106 4.106 10 C -0.121 4.121 11 C 0.040 3.960 12 C -0.513 4.513 13 H 0.066 0.934 14 C -0.006 4.006 15 N -0.938 5.938 16 Si 0.957 3.043 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.269 1.269 20 C -0.076 4.076 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.115 4.115 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.342 0.658 33 H 0.019 0.981 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.037 0.963 39 H 0.046 0.954 40 H 0.067 0.933 41 H -0.016 1.016 42 H -0.018 1.018 43 H 0.259 0.741 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.133 0.867 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.519 -5.533 26.517 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C 0.049 3.951 4 H 0.080 0.920 5 C -0.093 4.093 6 N -0.310 5.310 7 C -0.045 4.045 8 C -0.054 4.054 9 C -0.163 4.163 10 C -0.179 4.179 11 C 0.002 3.998 12 C -0.552 4.552 13 H 0.084 0.916 14 C -0.203 4.203 15 N -0.579 5.579 16 Si 0.782 3.218 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.194 1.194 20 C -0.113 4.113 21 C -0.087 4.087 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.150 4.150 26 C -0.133 4.133 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.161 0.839 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.002 0.998 42 H 0.000 1.000 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.118 0.882 46 H 0.150 0.850 47 H 0.156 0.844 48 H 0.155 0.845 49 H 0.151 0.849 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.637 -6.311 26.184 27.739 hybrid contribution -0.470 1.288 -1.113 1.766 sum 6.167 -5.023 25.071 26.302 Atomic orbital electron populations 1.22900 0.80462 1.02617 1.00708 1.87826 1.20554 1.27399 1.94943 1.22025 0.94677 0.85266 0.93107 0.91974 1.22595 0.91335 1.00130 0.95271 1.60525 1.14100 1.54210 1.02184 1.21798 0.96497 0.97041 0.89173 1.20475 0.94068 0.96069 0.94792 1.21500 0.98952 0.95177 1.00662 1.21678 0.99886 0.97345 0.98963 1.19006 0.95486 0.93626 0.91678 1.21583 0.93735 1.43212 0.96621 0.91578 1.25941 1.00116 0.95772 0.98438 1.70103 1.29902 1.48013 1.09908 0.85625 0.80125 0.78851 0.77204 1.19196 1.21439 1.19392 1.20693 0.95869 1.03820 0.90955 1.19891 0.99823 0.93670 0.95329 1.21299 1.00577 0.99468 0.93469 1.21412 0.99971 0.97175 0.96196 1.21432 1.00276 0.93035 1.00421 1.21408 1.00036 1.00248 0.93288 1.21197 0.99697 0.96230 0.96204 0.90199 0.94601 0.91916 0.91300 0.93613 0.83880 0.96303 0.92895 0.91311 0.94300 0.95423 0.94432 0.93458 0.91380 0.99772 0.99974 0.93195 0.90254 0.88183 0.84975 0.84429 0.84468 0.84913 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.69 113.37 1.21 1.84 16 2 O -0.39 -9.20 9.84 -148.98 -1.47 -10.66 16 3 C 0.11 2.14 2.40 30.59 0.07 2.21 16 4 H 0.06 1.18 7.79 -2.38 -0.02 1.16 16 5 C 0.04 0.81 5.35 86.30 0.46 1.28 16 6 N -0.68 -17.80 3.71 -513.88 -1.91 -19.71 16 7 C 0.08 2.83 4.65 86.30 0.40 3.23 16 8 C -0.05 -2.10 0.60 -52.18 -0.03 -2.13 16 9 C -0.11 -3.98 8.06 71.98 0.58 -3.40 16 10 C -0.12 -4.25 7.89 71.98 0.57 -3.69 16 11 C 0.04 2.06 4.04 29.85 0.12 2.18 16 12 C -0.51 -28.39 7.65 25.60 0.20 -28.19 16 13 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 14 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 15 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 16 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 C -0.08 -1.28 5.06 29.85 0.15 -1.13 16 21 C -0.09 -1.58 4.97 -19.86 -0.10 -1.68 16 22 C -0.13 -2.11 9.70 22.27 0.22 -1.89 16 23 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 24 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 26 C -0.12 -2.17 9.40 22.27 0.21 -1.96 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 0.69 8.09 -2.39 -0.02 0.67 16 29 H 0.06 1.45 6.02 -2.38 -0.01 1.44 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.34 8.18 6.70 -89.69 -0.60 7.57 16 33 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 2.21 7.43 -2.39 -0.02 2.19 16 36 H 0.04 1.56 6.62 -2.39 -0.02 1.55 16 37 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 40 H 0.07 1.89 6.57 -2.39 -0.02 1.87 16 41 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 45 H 0.10 1.35 8.08 -2.39 -0.02 1.33 16 46 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 48 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 49 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 50 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -65.11 393.32 4.41 -60.70 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.28 Total: 19.06 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 5.19 Total: -38.62 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -1.62 Total: -77.01 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.47 Total: -10.66 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.11 4.41 -60.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294917841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.498 kcal (2) G-P(sol) polarization free energy of solvation -65.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds