Wall clock time and date at job start Tue Mar 31 2020 09:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47542 * 2 1 4 4 N 1.46891 * 109.47322 * 180.85628 * 3 2 1 5 5 C 1.46908 * 111.00135 * 72.38688 * 4 3 2 6 6 C 1.50696 * 109.47280 * 199.47609 * 5 4 3 7 7 C 1.38269 * 119.94160 * 263.81279 * 6 5 4 8 8 C 1.38142 * 120.05509 * 179.73014 * 7 6 5 9 9 C 1.38732 * 119.94561 * 0.56060 * 8 7 6 10 10 O 1.35890 * 120.06166 * 179.68734 * 9 8 7 11 11 C 1.42904 * 116.99730 * 0.02562 * 10 9 8 12 12 C 1.38732 * 119.88341 * 359.70815 * 9 8 7 13 13 C 1.38145 * 119.94993 * 0.02562 * 12 9 8 14 14 C 1.46903 * 111.00058 * 196.34082 * 4 3 2 15 15 C 1.52996 * 109.46846 * 66.05071 * 14 4 3 16 16 H 1.09005 * 109.47338 * 304.99396 * 15 14 4 17 17 C 1.52994 * 109.47845 * 64.99877 * 15 14 4 18 18 C 1.53001 * 109.46746 * 185.00084 * 15 14 4 19 19 C 1.50708 * 109.47130 * 174.99781 * 18 15 14 20 20 H 1.08004 * 119.99588 * 359.97438 * 19 18 15 21 21 C 1.37874 * 119.99949 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99773 * 179.72244 * 21 19 18 23 23 Si 1.86798 * 120.00383 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47202 * 269.72903 * 23 21 19 25 25 H 1.48506 * 109.46744 * 29.72574 * 23 21 19 26 26 H 1.48504 * 109.47189 * 149.72179 * 23 21 19 27 27 H 1.08999 * 109.47353 * 300.00686 * 1 2 3 28 28 H 1.09001 * 109.47020 * 59.99804 * 1 2 3 29 29 H 1.08996 * 109.47590 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47047 * 240.00011 * 2 1 3 31 31 H 1.09001 * 109.47020 * 120.00196 * 2 1 3 32 32 H 1.08997 * 109.46847 * 60.85301 * 3 2 1 33 33 H 1.09001 * 109.46738 * 300.85761 * 3 2 1 34 34 H 1.09001 * 109.46836 * 319.47443 * 5 4 3 35 35 H 1.09001 * 109.46910 * 79.47485 * 5 4 3 36 36 H 1.08002 * 119.96890 * 359.97266 * 7 6 5 37 37 H 1.08003 * 120.02742 * 180.24931 * 8 7 6 38 38 H 1.09004 * 109.47150 * 300.00130 * 11 10 9 39 39 H 1.08994 * 109.47438 * 60.00080 * 11 10 9 40 40 H 1.09004 * 109.46858 * 180.02562 * 11 10 9 41 41 H 1.08004 * 120.02517 * 179.97438 * 12 9 8 42 42 H 1.08004 * 119.97774 * 180.02562 * 13 12 9 43 43 H 1.08997 * 109.47199 * 306.04689 * 14 4 3 44 44 H 1.09003 * 109.46952 * 186.04371 * 14 4 3 45 45 H 1.09003 * 109.47183 * 300.00465 * 17 15 14 46 46 H 1.09005 * 109.47045 * 59.99339 * 17 15 14 47 47 H 1.08999 * 109.47543 * 180.02562 * 17 15 14 48 48 H 1.09001 * 109.47613 * 54.99858 * 18 15 14 49 49 H 1.08998 * 109.47270 * 294.99307 * 18 15 14 50 50 H 0.97004 * 119.99907 * 180.27275 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5088 1.4425 -0.0207 5 6 4.0168 1.0340 -1.3372 6 6 5.4494 0.5851 -1.2058 7 6 6.4773 1.4694 -1.4761 8 6 7.7913 1.0621 -1.3509 9 6 8.0792 -0.2390 -0.9649 10 8 9.3710 -0.6441 -0.8472 11 6 10.3829 0.3227 -1.1360 12 6 7.0460 -1.1260 -0.6997 13 6 5.7336 -0.7121 -0.8209 14 6 4.0408 2.7566 0.3643 15 6 3.6975 3.0366 1.8287 16 1 2.6211 2.9440 1.9737 17 6 4.4212 2.0289 2.7240 18 6 4.1412 4.4545 2.1943 19 6 3.6941 4.7746 3.5975 20 1 3.1477 4.0403 4.1709 21 6 3.9825 6.0049 4.1491 22 7 3.5876 6.2862 5.3716 23 14 4.9281 7.2746 3.1576 24 1 6.3836 7.1083 3.4003 25 1 4.6426 7.0868 1.7124 26 1 4.5096 8.6379 3.5718 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6893 1.9518 0.8975 33 1 1.6642 1.9607 -0.8822 34 1 3.4123 0.2121 -1.7209 35 1 3.9621 1.8775 -2.0255 36 1 6.2526 2.4807 -1.7815 37 1 8.5939 1.7544 -1.5583 38 1 10.2758 0.6645 -2.1655 39 1 10.2791 1.1707 -0.4591 40 1 11.3659 -0.1296 -1.0041 41 1 7.2675 -2.1395 -0.3994 42 1 4.9289 -1.4022 -0.6141 43 1 3.5975 3.5270 -0.2666 44 1 5.1234 2.7616 0.2376 45 1 4.1051 1.0188 2.4635 46 1 5.4976 2.1215 2.5790 47 1 4.1762 2.2282 3.7672 48 1 3.6944 5.1656 1.4995 49 1 5.2274 4.5220 2.1349 50 1 3.7871 7.1532 5.7583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602443708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:59 Heat of formation + Delta-G solvation = -29.178653 kcal Electronic energy + Delta-G solvation = -25584.323790 eV Core-core repulsion = 22190.198023 eV Total energy + Delta-G solvation = -3394.125766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.22942 -38.64895 -37.13568 -34.85631 -33.13285 -32.07373 -31.12380 -30.47173 -27.84724 -27.49869 -26.31836 -25.82658 -23.56659 -22.65502 -21.84609 -21.38424 -20.32312 -18.83485 -18.21701 -16.77312 -16.30491 -15.97410 -15.86154 -15.35263 -14.89643 -14.74377 -14.36873 -14.02187 -13.93631 -13.70238 -13.49659 -13.30431 -12.99332 -12.59380 -12.50005 -12.24231 -12.13864 -11.93919 -11.86671 -11.55388 -11.46662 -11.24210 -11.06845 -10.93163 -10.88760 -10.80139 -10.60168 -10.47152 -10.36056 -9.71063 -9.58911 -9.35627 -9.02458 -8.96366 -8.48830 -8.17987 -7.97817 -5.99292 -3.95654 1.35503 1.39624 3.16779 3.32427 3.39644 3.43150 3.66828 4.26913 4.48927 4.70534 4.81325 4.90892 4.92939 4.97595 5.02694 5.13873 5.24075 5.26835 5.31920 5.34778 5.38562 5.49014 5.53115 5.63606 5.68031 5.70242 5.76631 5.89992 5.95570 6.01971 6.05514 6.12659 6.23085 6.26792 6.31145 6.35435 6.38639 6.50610 6.65477 6.68623 6.73969 6.90731 7.11121 7.20642 7.30214 7.32591 7.34798 7.44048 7.55324 7.86378 8.61051 9.06978 9.63971 11.14267 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.009322 B = 0.004416 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.083820 B = 6339.064185 C = 8601.378496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.049 3.951 4 N -0.528 5.528 5 C 0.094 3.906 6 C -0.103 4.103 7 C -0.073 4.073 8 C -0.207 4.207 9 C 0.121 3.879 10 O -0.321 6.321 11 C 0.028 3.972 12 C -0.153 4.153 13 C -0.057 4.057 14 C 0.057 3.943 15 C -0.071 4.071 16 H 0.062 0.938 17 C -0.121 4.121 18 C -0.009 4.009 19 C -0.510 4.510 20 H 0.074 0.926 21 C 0.065 3.935 22 N -0.906 5.906 23 Si 0.877 3.123 24 H -0.278 1.278 25 H -0.267 1.267 26 H -0.289 1.289 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.036 0.964 47 H 0.056 0.944 48 H 0.011 0.989 49 H 0.010 0.990 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -14.445 -17.356 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.079 4.079 4 N -0.251 5.251 5 C -0.034 4.034 6 C -0.104 4.104 7 C -0.092 4.092 8 C -0.225 4.225 9 C 0.076 3.924 10 O -0.234 6.234 11 C -0.067 4.067 12 C -0.172 4.172 13 C -0.076 4.076 14 C -0.070 4.070 15 C -0.090 4.090 16 H 0.080 0.920 17 C -0.179 4.179 18 C -0.047 4.047 19 C -0.548 4.548 20 H 0.092 0.908 21 C -0.135 4.135 22 N -0.545 5.545 23 Si 0.705 3.295 24 H -0.204 1.204 25 H -0.192 1.192 26 H -0.215 1.215 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.075 0.925 48 H 0.029 0.971 49 H 0.028 0.972 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.314 -14.820 -16.826 23.043 hybrid contribution 0.438 1.817 -1.014 2.126 sum 5.752 -13.003 -17.840 22.813 Atomic orbital electron populations 1.21741 0.95995 1.01363 1.01846 1.21513 0.94973 0.96801 1.02253 1.22246 0.87335 0.96809 1.01473 1.62000 1.07388 1.29636 1.26124 1.21012 0.92020 0.99620 0.90732 1.19653 0.94915 0.93952 1.01878 1.20860 0.91708 0.98958 0.97634 1.21161 0.97874 0.95481 1.08032 1.19017 0.83748 0.93005 0.96647 1.86045 1.12901 1.39838 1.84644 1.23031 0.90241 0.92939 1.00520 1.20392 0.90892 0.99728 1.06162 1.20765 0.95215 0.95564 0.96060 1.22378 0.99765 0.87204 0.97696 1.21037 0.99801 0.96963 0.91207 0.91980 1.21557 0.98879 0.97511 0.99925 1.19616 0.95850 0.91845 0.97369 1.21138 1.35716 1.00489 0.97476 0.90823 1.25017 0.95601 0.98192 0.94726 1.69918 1.47345 1.22700 1.14555 0.86826 0.80543 0.80999 0.81180 1.20414 1.19173 1.21512 0.92441 0.93131 0.92878 0.92544 0.91133 0.89621 0.95340 0.90227 0.94376 0.86142 0.85757 0.92827 0.92518 0.88426 0.85485 0.85414 0.95619 0.91107 0.93648 0.94460 0.92451 0.97095 0.97211 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.28 6.02 -26.73 -0.16 -1.44 16 3 C 0.05 0.64 4.83 -3.83 -0.02 0.62 16 4 N -0.53 -7.39 3.83 -236.07 -0.90 -8.29 16 5 C 0.09 1.12 4.96 -4.97 -0.02 1.09 16 6 C -0.10 -1.28 5.02 -104.60 -0.52 -1.80 16 7 C -0.07 -0.90 8.41 -39.61 -0.33 -1.24 16 8 C -0.21 -2.48 9.04 -39.43 -0.36 -2.83 16 9 C 0.12 1.51 6.69 -39.22 -0.26 1.25 16 10 O -0.32 -3.78 10.50 -19.40 -0.20 -3.99 16 11 C 0.03 0.22 9.81 101.05 0.99 1.22 16 12 C -0.15 -1.84 9.99 -39.43 -0.39 -2.24 16 13 C -0.06 -0.68 9.72 -39.61 -0.38 -1.06 16 14 C 0.06 0.94 4.17 -3.82 -0.02 0.93 16 15 C -0.07 -1.43 2.28 -90.62 -0.21 -1.63 16 16 H 0.06 1.27 6.10 -51.93 -0.32 0.96 16 17 C -0.12 -2.41 8.89 37.15 0.33 -2.08 16 18 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 19 C -0.51 -14.55 8.96 -34.44 -0.31 -14.86 16 20 H 0.07 2.26 7.30 -52.48 -0.38 1.87 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 22 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 23 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.27 5.86 -51.93 -0.30 0.97 16 33 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 34 H 0.08 0.83 6.24 -51.93 -0.32 0.51 16 35 H 0.04 0.45 7.90 -51.93 -0.41 0.04 16 36 H 0.12 1.38 8.02 -52.49 -0.42 0.96 16 37 H 0.12 1.25 6.30 -52.48 -0.33 0.92 16 38 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 39 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.07 1.20 6.36 -51.93 -0.33 0.86 16 45 H 0.04 0.82 7.75 -51.93 -0.40 0.42 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.26 6.95 -51.93 -0.36 0.89 16 48 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 49 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 50 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -31.45 389.05 -9.51 -40.96 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.88 Total: -0.82 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -1.50 Total: -23.68 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.13 Total: -35.70 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.20 Total: -3.99 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.45 -9.51 -40.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602443708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.786 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds