Wall clock time and date at job start Tue Mar 31 2020 09:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47542 * 2 1 4 4 N 1.46891 * 109.47322 * 180.85628 * 3 2 1 5 5 C 1.46908 * 111.00135 * 72.38688 * 4 3 2 6 6 C 1.50696 * 109.47280 * 199.47609 * 5 4 3 7 7 C 1.38269 * 119.94160 * 263.81279 * 6 5 4 8 8 C 1.38142 * 120.05509 * 179.73014 * 7 6 5 9 9 C 1.38732 * 119.94561 * 0.56060 * 8 7 6 10 10 O 1.35890 * 120.06166 * 179.68734 * 9 8 7 11 11 C 1.42904 * 116.99730 * 0.02562 * 10 9 8 12 12 C 1.38732 * 119.88341 * 359.70815 * 9 8 7 13 13 C 1.38145 * 119.94993 * 0.02562 * 12 9 8 14 14 C 1.46903 * 111.00058 * 196.34082 * 4 3 2 15 15 C 1.52996 * 109.46846 * 66.05071 * 14 4 3 16 16 H 1.09005 * 109.47338 * 304.99396 * 15 14 4 17 17 C 1.52994 * 109.47845 * 64.99877 * 15 14 4 18 18 C 1.53001 * 109.46746 * 185.00084 * 15 14 4 19 19 C 1.50708 * 109.47130 * 174.99781 * 18 15 14 20 20 H 1.08004 * 119.99588 * 359.97438 * 19 18 15 21 21 C 1.37874 * 119.99949 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99773 * 179.72244 * 21 19 18 23 23 Si 1.86798 * 120.00383 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47202 * 269.72903 * 23 21 19 25 25 H 1.48506 * 109.46744 * 29.72574 * 23 21 19 26 26 H 1.48504 * 109.47189 * 149.72179 * 23 21 19 27 27 H 1.08999 * 109.47353 * 300.00686 * 1 2 3 28 28 H 1.09001 * 109.47020 * 59.99804 * 1 2 3 29 29 H 1.08996 * 109.47590 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47047 * 240.00011 * 2 1 3 31 31 H 1.09001 * 109.47020 * 120.00196 * 2 1 3 32 32 H 1.08997 * 109.46847 * 60.85301 * 3 2 1 33 33 H 1.09001 * 109.46738 * 300.85761 * 3 2 1 34 34 H 1.09001 * 109.46836 * 319.47443 * 5 4 3 35 35 H 1.09001 * 109.46910 * 79.47485 * 5 4 3 36 36 H 1.08002 * 119.96890 * 359.97266 * 7 6 5 37 37 H 1.08003 * 120.02742 * 180.24931 * 8 7 6 38 38 H 1.09004 * 109.47150 * 300.00130 * 11 10 9 39 39 H 1.08994 * 109.47438 * 60.00080 * 11 10 9 40 40 H 1.09004 * 109.46858 * 180.02562 * 11 10 9 41 41 H 1.08004 * 120.02517 * 179.97438 * 12 9 8 42 42 H 1.08004 * 119.97774 * 180.02562 * 13 12 9 43 43 H 1.08997 * 109.47199 * 306.04689 * 14 4 3 44 44 H 1.09003 * 109.46952 * 186.04371 * 14 4 3 45 45 H 1.09003 * 109.47183 * 300.00465 * 17 15 14 46 46 H 1.09005 * 109.47045 * 59.99339 * 17 15 14 47 47 H 1.08999 * 109.47543 * 180.02562 * 17 15 14 48 48 H 1.09001 * 109.47613 * 54.99858 * 18 15 14 49 49 H 1.08998 * 109.47270 * 294.99307 * 18 15 14 50 50 H 0.97004 * 119.99907 * 180.27275 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5088 1.4425 -0.0207 5 6 4.0168 1.0340 -1.3372 6 6 5.4494 0.5851 -1.2058 7 6 6.4773 1.4694 -1.4761 8 6 7.7913 1.0621 -1.3509 9 6 8.0792 -0.2390 -0.9649 10 8 9.3710 -0.6441 -0.8472 11 6 10.3829 0.3227 -1.1360 12 6 7.0460 -1.1260 -0.6997 13 6 5.7336 -0.7121 -0.8209 14 6 4.0408 2.7566 0.3643 15 6 3.6975 3.0366 1.8287 16 1 2.6211 2.9440 1.9737 17 6 4.4212 2.0289 2.7240 18 6 4.1412 4.4545 2.1943 19 6 3.6941 4.7746 3.5975 20 1 3.1477 4.0403 4.1709 21 6 3.9825 6.0049 4.1491 22 7 3.5876 6.2862 5.3716 23 14 4.9281 7.2746 3.1576 24 1 6.3836 7.1083 3.4003 25 1 4.6426 7.0868 1.7124 26 1 4.5096 8.6379 3.5718 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6893 1.9518 0.8975 33 1 1.6642 1.9607 -0.8822 34 1 3.4123 0.2121 -1.7209 35 1 3.9621 1.8775 -2.0255 36 1 6.2526 2.4807 -1.7815 37 1 8.5939 1.7544 -1.5583 38 1 10.2758 0.6645 -2.1655 39 1 10.2791 1.1707 -0.4591 40 1 11.3659 -0.1296 -1.0041 41 1 7.2675 -2.1395 -0.3994 42 1 4.9289 -1.4022 -0.6141 43 1 3.5975 3.5270 -0.2666 44 1 5.1234 2.7616 0.2376 45 1 4.1051 1.0188 2.4635 46 1 5.4976 2.1215 2.5790 47 1 4.1762 2.2282 3.7672 48 1 3.6944 5.1656 1.4995 49 1 5.2274 4.5220 2.1349 50 1 3.7871 7.1532 5.7583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602443708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:58 Heat of formation + Delta-G solvation = -46.188956 kcal Electronic energy + Delta-G solvation = -25585.061412 eV Core-core repulsion = 22190.198023 eV Total energy + Delta-G solvation = -3394.863389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09348 -39.71442 -38.13431 -36.41562 -34.44572 -33.79641 -31.99641 -31.51931 -29.50277 -28.46004 -27.61805 -26.77214 -25.13352 -23.51938 -23.27105 -22.29598 -21.44149 -20.38982 -19.05344 -18.90705 -17.24615 -16.95729 -16.67401 -16.53585 -16.21634 -15.86103 -15.67790 -15.30233 -15.17165 -14.93231 -14.53253 -14.44364 -14.30781 -13.93854 -13.58401 -13.45157 -13.36431 -13.18347 -12.92091 -12.79985 -12.71859 -12.51113 -12.40007 -12.28817 -12.07226 -11.88862 -11.76722 -11.71996 -11.65362 -11.44568 -11.25108 -11.14437 -10.91059 -10.73217 -9.86986 -9.18838 -8.96859 -8.25988 -6.28019 0.46844 0.49086 1.34412 1.35839 1.47621 2.37088 2.42251 2.72788 3.09176 3.22451 3.87408 3.92646 4.00025 4.04623 4.17532 4.20435 4.27173 4.38059 4.39067 4.44264 4.47415 4.50382 4.59531 4.62384 4.66451 4.72464 4.79562 4.79799 4.85250 4.90891 4.93967 5.02951 5.06115 5.09308 5.15324 5.25918 5.35987 5.39258 5.40300 5.41990 5.45141 5.50755 5.55711 5.70585 5.74495 5.75362 5.88974 6.21244 6.29626 6.36596 6.49018 6.79349 7.35365 8.90903 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.009322 B = 0.004416 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.083820 B = 6339.064185 C = 8601.378496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C 0.049 3.951 4 N -0.532 5.532 5 C 0.098 3.902 6 C -0.114 4.114 7 C -0.084 4.084 8 C -0.214 4.214 9 C 0.108 3.892 10 O -0.337 6.337 11 C 0.020 3.980 12 C -0.165 4.165 13 C -0.060 4.060 14 C 0.070 3.930 15 C -0.067 4.067 16 H 0.052 0.948 17 C -0.109 4.109 18 C -0.005 4.005 19 C -0.517 4.517 20 H 0.034 0.966 21 C 0.003 3.997 22 N -0.953 5.953 23 Si 0.946 3.054 24 H -0.269 1.269 25 H -0.247 1.247 26 H -0.285 1.285 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.028 0.972 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.024 0.976 48 H 0.014 0.986 49 H 0.013 0.987 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.919 -14.849 -20.000 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.078 4.078 4 N -0.256 5.256 5 C -0.029 4.029 6 C -0.115 4.115 7 C -0.102 4.102 8 C -0.233 4.233 9 C 0.063 3.937 10 O -0.251 6.251 11 C -0.075 4.075 12 C -0.184 4.184 13 C -0.078 4.078 14 C -0.058 4.058 15 C -0.085 4.085 16 H 0.071 0.929 17 C -0.166 4.166 18 C -0.043 4.043 19 C -0.555 4.555 20 H 0.052 0.948 21 C -0.193 4.193 22 N -0.595 5.595 23 Si 0.769 3.231 24 H -0.194 1.194 25 H -0.171 1.171 26 H -0.211 1.211 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.160 0.840 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.033 0.967 49 H 0.031 0.969 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.154 -15.244 -19.489 25.497 hybrid contribution 0.168 1.861 -0.135 1.873 sum 6.322 -13.383 -19.624 24.580 Atomic orbital electron populations 1.21726 0.95161 1.02206 1.01648 1.21453 0.95630 0.95206 1.02517 1.22256 0.86778 0.98166 1.00639 1.61941 1.07940 1.27795 1.27901 1.21045 0.92027 1.00398 0.89441 1.19769 0.95103 0.94254 1.02348 1.21046 0.91971 0.99393 0.97814 1.21365 0.98324 0.95692 1.07874 1.19244 0.84293 0.93375 0.96763 1.86024 1.13103 1.41234 1.84738 1.23287 0.90239 0.92714 1.01213 1.20636 0.91152 1.00332 1.06271 1.20965 0.95565 0.95724 0.95592 1.22079 0.99903 0.88871 0.94903 1.20909 0.99115 0.94632 0.93891 0.92950 1.21418 0.98750 0.98528 0.97944 1.19552 0.95785 0.94410 0.94516 1.21439 1.34932 0.99738 0.99397 0.94785 1.25971 0.96811 1.00710 0.95830 1.70076 1.49200 1.23576 1.16639 0.85725 0.79150 0.77813 0.80365 1.19402 1.17095 1.21054 0.93621 0.92376 0.91526 0.90869 0.92181 0.92063 0.94479 0.88326 0.93819 0.85488 0.84308 0.91661 0.92546 0.86323 0.84555 0.83960 0.95405 0.91023 0.91841 0.94491 0.95645 0.96741 0.96897 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.11 -2.17 6.02 30.59 0.18 -1.99 16 3 C 0.05 1.20 4.83 86.31 0.42 1.62 16 4 N -0.53 -13.84 3.83 -900.80 -3.45 -17.30 16 5 C 0.10 2.06 4.96 85.55 0.42 2.49 16 6 C -0.11 -2.57 5.02 -19.85 -0.10 -2.67 16 7 C -0.08 -1.91 8.41 22.25 0.19 -1.72 16 8 C -0.21 -4.78 9.04 22.37 0.20 -4.58 16 9 C 0.11 2.57 6.69 22.51 0.15 2.73 16 10 O -0.34 -7.52 10.50 -92.32 -0.97 -8.49 16 11 C 0.02 0.29 9.81 113.37 1.11 1.40 16 12 C -0.17 -3.75 9.99 22.37 0.22 -3.53 16 13 C -0.06 -1.30 9.72 22.25 0.22 -1.08 16 14 C 0.07 2.22 4.17 86.30 0.36 2.58 16 15 C -0.07 -2.65 2.28 -10.80 -0.02 -2.68 16 16 H 0.05 2.19 6.10 -2.38 -0.01 2.17 16 17 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 18 C 0.00 -0.23 3.52 29.85 0.10 -0.12 16 19 C -0.52 -30.24 8.96 25.60 0.23 -30.01 16 20 H 0.03 2.20 7.30 -2.91 -0.02 2.17 16 21 C 0.00 0.17 5.47 84.65 0.46 0.63 16 22 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 23 Si 0.95 45.10 27.47 68.60 1.88 46.99 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.21 6.54 -2.39 -0.02 1.20 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.80 5.86 -2.39 -0.01 1.79 16 33 H 0.04 0.85 8.05 -2.39 -0.02 0.83 16 34 H 0.10 1.71 6.24 -2.39 -0.01 1.70 16 35 H 0.04 0.89 7.90 -2.39 -0.02 0.88 16 36 H 0.13 2.65 8.02 -2.91 -0.02 2.63 16 37 H 0.14 2.55 6.30 -2.91 -0.02 2.53 16 38 H 0.06 0.78 7.66 -2.38 -0.02 0.76 16 39 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 42 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 44 H 0.07 2.27 6.36 -2.39 -0.02 2.25 16 45 H 0.06 2.27 7.75 -2.39 -0.02 2.25 16 46 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 47 H 0.02 1.14 6.95 -2.39 -0.02 1.12 16 48 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 49 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 50 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -68.63 389.05 4.09 -64.53 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.83 Total: 17.45 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 5.50 Total: -42.58 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -3.15 Total: -77.89 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.97 Total: -8.49 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -68.63 4.09 -64.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602443708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.342 kcal (2) G-P(sol) polarization free energy of solvation -68.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds