Wall clock time and date at job start Tue Mar 31 2020 09:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47072 * 2 1 4 4 H 1.09005 * 109.47126 * 304.89683 * 3 2 1 5 5 C 1.50694 * 109.46818 * 184.90409 * 3 2 1 6 6 H 1.08006 * 119.99999 * 245.44405 * 5 3 2 7 7 C 1.37880 * 120.00579 * 65.45112 * 5 3 2 8 8 N 1.31518 * 119.99409 * 9.46652 * 7 5 3 9 9 Si 1.86798 * 120.00205 * 189.46983 * 7 5 3 10 10 H 1.48498 * 109.46859 * 84.99196 * 9 7 5 11 11 H 1.48497 * 109.46861 * 204.99049 * 9 7 5 12 12 H 1.48503 * 109.47085 * 324.98926 * 9 7 5 13 13 N 1.46491 * 109.47463 * 64.89722 * 3 2 1 14 14 C 1.34779 * 120.00636 * 275.00419 * 13 3 2 15 15 O 1.21278 * 119.99498 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00215 * 180.02562 * 14 13 3 17 17 C 1.52994 * 109.47008 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47226 * 294.99936 * 17 16 14 19 19 C 1.53001 * 109.47082 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47341 * 59.99920 * 19 18 17 21 21 C 1.53001 * 109.47287 * 59.99873 * 20 19 18 22 22 C 1.53004 * 109.46802 * 300.00035 * 21 20 19 23 23 C 1.52998 * 109.47069 * 60.00282 * 22 21 20 24 24 C 1.52993 * 109.47200 * 299.99951 * 22 21 20 25 25 C 1.52992 * 109.47377 * 174.99745 * 17 16 14 26 26 C 1.53001 * 109.47635 * 180.02562 * 25 17 16 27 27 H 1.08997 * 109.46803 * 300.00387 * 1 2 3 28 28 H 1.08996 * 109.47083 * 60.00322 * 1 2 3 29 29 H 1.08992 * 109.46913 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46803 * 239.99613 * 2 1 3 31 31 H 1.09004 * 109.46923 * 119.99930 * 2 1 3 32 32 H 0.97003 * 119.99380 * 180.02562 * 8 7 5 33 33 H 0.97007 * 119.99821 * 95.00002 * 13 3 2 34 34 H 1.09000 * 109.46598 * 299.99443 * 16 14 13 35 35 H 1.09000 * 109.47377 * 59.99685 * 16 14 13 36 36 H 1.09006 * 109.47458 * 54.99310 * 17 16 14 37 37 H 1.08998 * 109.47358 * 59.99734 * 18 17 16 38 38 H 1.09006 * 109.46635 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47174 * 299.99406 * 19 18 17 40 40 H 1.09002 * 109.47202 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.46940 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47212 * 59.99708 * 21 20 19 43 43 H 1.09002 * 109.46662 * 179.97438 * 22 21 20 44 44 H 1.08997 * 109.47601 * 59.99925 * 23 22 21 45 45 H 1.09002 * 109.47042 * 179.97438 * 23 22 21 46 46 H 1.09003 * 109.47271 * 299.99870 * 24 22 21 47 47 H 1.08995 * 109.47133 * 180.02562 * 24 22 21 48 48 H 1.08998 * 109.47443 * 300.00299 * 25 17 16 49 49 H 1.08997 * 109.47174 * 59.99667 * 26 25 17 50 50 H 1.09001 * 109.47239 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4441 -0.1215 6 1 4.1494 1.8091 0.6937 7 6 4.1413 0.9800 -1.2733 8 7 3.4096 0.7113 -2.3326 9 14 5.9920 0.7326 -1.3290 10 1 6.3289 -0.6068 -0.7835 11 1 6.4618 0.8272 -2.7345 12 1 6.6563 1.7808 -0.5134 13 7 1.6505 2.0982 1.2507 14 6 0.4330 2.6652 1.3636 15 8 -0.3399 2.6329 0.4295 16 6 0.0325 3.3403 2.6500 17 6 -1.3861 3.8969 2.5137 18 6 -1.4010 5.0016 1.4552 19 6 -2.8195 5.5586 1.3193 20 6 -3.2726 6.1335 2.6628 21 6 -2.3221 7.2561 3.0839 22 6 -0.9035 6.6989 3.2198 23 6 -0.4505 6.1241 1.8762 24 6 -0.8887 5.5943 4.2782 25 6 -1.8398 4.4716 3.8570 26 6 -3.2587 5.0277 3.7209 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8311 0.3844 -3.1428 33 1 2.2688 2.1244 1.9977 34 1 0.0625 2.6167 3.4646 35 1 0.7235 4.1559 2.8628 36 1 -2.0631 3.0970 2.2134 37 1 -1.0778 4.5922 0.4981 38 1 -2.8300 6.3459 0.5655 39 1 -3.4967 4.7589 1.0193 40 1 -4.2830 6.5307 2.5659 41 1 -2.6446 7.6653 4.0412 42 1 -2.3326 8.0430 2.3298 43 1 -0.2263 7.4988 3.5193 44 1 -0.4610 6.9111 1.1221 45 1 0.5603 5.7277 1.9729 46 1 -1.2114 6.0038 5.2354 47 1 0.1219 5.1977 4.3753 48 1 -1.8292 3.6847 4.6111 49 1 -3.9353 4.2275 3.4209 50 1 -3.5817 5.4375 4.6779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153701708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:54 Heat of formation + Delta-G solvation = -84.731330 kcal Electronic energy + Delta-G solvation = -27101.674366 eV Core-core repulsion = 23705.139655 eV Total energy + Delta-G solvation = -3396.534711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55998 -38.78229 -35.13998 -33.56682 -32.58004 -32.48090 -32.25668 -31.01938 -28.61680 -26.80808 -25.80287 -24.52963 -22.90628 -21.44069 -21.34391 -21.04207 -19.87922 -19.21751 -17.22925 -16.91680 -15.72942 -15.28851 -15.18750 -14.98522 -14.40465 -14.30567 -14.17288 -13.88961 -13.46059 -13.24715 -13.19704 -12.75179 -12.66086 -12.51412 -12.29089 -12.09637 -11.91403 -11.53793 -11.35632 -11.22524 -11.01605 -10.88075 -10.82757 -10.76833 -10.75217 -10.69190 -10.51749 -10.31839 -10.14220 -9.68887 -9.54184 -9.49568 -9.45688 -9.07117 -8.70044 -8.45159 -7.73925 -6.12669 -4.17650 3.25681 3.32590 3.33727 3.53936 4.17380 4.40158 4.54008 4.55800 4.64700 5.11566 5.15061 5.19983 5.21227 5.25050 5.29754 5.35202 5.40235 5.42755 5.48786 5.56519 5.65100 5.71869 5.80371 5.85560 5.90588 5.95512 6.01180 6.04844 6.08395 6.13668 6.17797 6.23908 6.25544 6.33781 6.37174 6.42042 6.54033 6.61634 6.62672 6.72233 6.84245 7.01908 7.20297 7.36453 7.49692 7.65498 7.75502 7.89472 8.11700 8.76791 8.83900 9.25301 9.49121 10.95479 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.003609 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.840264 B = 7755.513627 C = 8116.239371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.269 3.731 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.501 3.499 15 O -0.546 6.546 16 C -0.144 4.144 17 C -0.053 4.053 18 C -0.086 4.086 19 C -0.105 4.105 20 C -0.086 4.086 21 C -0.105 4.105 22 C -0.086 4.086 23 C -0.111 4.111 24 C -0.109 4.109 25 C -0.083 4.083 26 C -0.105 4.105 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.021 0.979 30 H 0.077 0.923 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.555 9.915 13.237 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.360 5.360 14 C 0.286 3.714 15 O -0.426 6.426 16 C -0.184 4.184 17 C -0.072 4.072 18 C -0.104 4.104 19 C -0.143 4.143 20 C -0.105 4.105 21 C -0.143 4.143 22 C -0.104 4.104 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.101 4.101 26 C -0.143 4.143 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.079 9.814 12.338 19.269 hybrid contribution 1.414 -0.238 0.313 1.468 sum -9.665 9.575 12.651 18.578 Atomic orbital electron populations 1.21832 0.98031 0.98003 1.01549 1.21845 0.92975 1.00035 1.00977 1.18735 0.94150 0.88819 0.81607 0.92715 1.21198 0.90762 1.43849 1.01694 0.92217 1.24882 0.98338 0.95216 0.95023 1.69990 1.35677 1.43848 1.02133 0.86561 0.85198 0.78697 0.77239 1.20460 1.21195 1.19940 1.46509 1.14924 1.56248 1.18313 1.20410 0.82528 0.79132 0.89325 1.90617 1.51486 1.59746 1.40719 1.21887 0.98676 1.00815 0.97021 1.20777 0.94997 0.97340 0.94077 1.21188 0.94435 0.94366 1.00418 1.21511 0.96965 0.99857 0.95955 1.21066 0.98267 0.95520 0.95634 1.21513 0.94978 0.97196 1.00589 1.21043 0.96391 0.97143 0.95831 1.21600 0.99198 0.97989 0.96033 1.21576 0.99579 0.95831 0.97627 1.21111 0.94803 0.97084 0.97108 1.21512 0.96488 0.97922 0.98339 0.93935 0.92995 0.95983 0.90417 0.94885 0.92619 0.78229 0.90050 0.89250 0.90685 0.88579 0.92437 0.92107 0.91902 0.92541 0.92320 0.91810 0.92416 0.91878 0.92510 0.91766 0.91549 0.92096 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.12 -2.86 5.50 -26.73 -0.15 -3.00 16 3 C 0.27 6.69 2.11 -69.09 -0.15 6.55 16 4 H 0.06 1.60 7.52 -51.93 -0.39 1.21 16 5 C -0.54 -14.14 8.66 -34.44 -0.30 -14.44 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -24.93 12.16 55.43 0.67 -24.26 16 9 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 13 N -0.71 -14.42 5.02 -54.94 -0.28 -14.69 16 14 C 0.50 9.41 6.11 -10.98 -0.07 9.35 16 15 O -0.55 -11.99 11.10 5.56 0.06 -11.93 16 16 C -0.14 -1.99 4.47 -27.89 -0.12 -2.12 16 17 C -0.05 -0.70 1.58 -90.62 -0.14 -0.84 16 18 C -0.09 -1.19 2.46 -90.62 -0.22 -1.41 16 19 C -0.11 -1.28 5.19 -26.73 -0.14 -1.42 16 20 C -0.09 -0.89 3.19 -90.59 -0.29 -1.18 16 21 C -0.11 -1.03 5.19 -26.73 -0.14 -1.17 16 22 C -0.09 -0.89 3.19 -90.62 -0.29 -1.18 16 23 C -0.11 -1.39 4.92 -26.73 -0.13 -1.52 16 24 C -0.11 -1.08 4.92 -26.71 -0.13 -1.22 16 25 C -0.08 -0.88 2.72 -90.60 -0.25 -1.13 16 26 C -0.11 -1.05 5.20 -26.70 -0.14 -1.19 16 27 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 28 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 2.06 6.80 -51.93 -0.35 1.70 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.39 6.85 8.53 -40.82 -0.35 6.51 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.14 4.82 -51.93 -0.25 0.89 16 36 H 0.07 1.13 7.96 -51.93 -0.41 0.71 16 37 H 0.10 1.69 5.95 -51.93 -0.31 1.38 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.84 6.32 -51.93 -0.33 0.51 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -28.67 356.22 -10.52 -39.19 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -8.89 Total: 7.57 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.43 Total: -16.85 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.40 Total: -38.95 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.06 Total: -11.93 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.67 -10.52 -39.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153701708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.541 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds