Wall clock time and date at job start Tue Mar 31 2020 09:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.47072 * 2 1 4 4 H 1.09005 * 109.47126 * 304.89683 * 3 2 1 5 5 C 1.50694 * 109.46818 * 184.90409 * 3 2 1 6 6 H 1.08006 * 119.99999 * 245.44405 * 5 3 2 7 7 C 1.37880 * 120.00579 * 65.45112 * 5 3 2 8 8 N 1.31518 * 119.99409 * 9.46652 * 7 5 3 9 9 Si 1.86798 * 120.00205 * 189.46983 * 7 5 3 10 10 H 1.48498 * 109.46859 * 84.99196 * 9 7 5 11 11 H 1.48497 * 109.46861 * 204.99049 * 9 7 5 12 12 H 1.48503 * 109.47085 * 324.98926 * 9 7 5 13 13 N 1.46491 * 109.47463 * 64.89722 * 3 2 1 14 14 C 1.34779 * 120.00636 * 275.00419 * 13 3 2 15 15 O 1.21278 * 119.99498 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00215 * 180.02562 * 14 13 3 17 17 C 1.52994 * 109.47008 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47226 * 294.99936 * 17 16 14 19 19 C 1.53001 * 109.47082 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.47341 * 59.99920 * 19 18 17 21 21 C 1.53001 * 109.47287 * 59.99873 * 20 19 18 22 22 C 1.53004 * 109.46802 * 300.00035 * 21 20 19 23 23 C 1.52998 * 109.47069 * 60.00282 * 22 21 20 24 24 C 1.52993 * 109.47200 * 299.99951 * 22 21 20 25 25 C 1.52992 * 109.47377 * 174.99745 * 17 16 14 26 26 C 1.53001 * 109.47635 * 180.02562 * 25 17 16 27 27 H 1.08997 * 109.46803 * 300.00387 * 1 2 3 28 28 H 1.08996 * 109.47083 * 60.00322 * 1 2 3 29 29 H 1.08992 * 109.46913 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46803 * 239.99613 * 2 1 3 31 31 H 1.09004 * 109.46923 * 119.99930 * 2 1 3 32 32 H 0.97003 * 119.99380 * 180.02562 * 8 7 5 33 33 H 0.97007 * 119.99821 * 95.00002 * 13 3 2 34 34 H 1.09000 * 109.46598 * 299.99443 * 16 14 13 35 35 H 1.09000 * 109.47377 * 59.99685 * 16 14 13 36 36 H 1.09006 * 109.47458 * 54.99310 * 17 16 14 37 37 H 1.08998 * 109.47358 * 59.99734 * 18 17 16 38 38 H 1.09006 * 109.46635 * 179.97438 * 19 18 17 39 39 H 1.08997 * 109.47174 * 299.99406 * 19 18 17 40 40 H 1.09002 * 109.47202 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.46940 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47212 * 59.99708 * 21 20 19 43 43 H 1.09002 * 109.46662 * 179.97438 * 22 21 20 44 44 H 1.08997 * 109.47601 * 59.99925 * 23 22 21 45 45 H 1.09002 * 109.47042 * 179.97438 * 23 22 21 46 46 H 1.09003 * 109.47271 * 299.99870 * 24 22 21 47 47 H 1.08995 * 109.47133 * 180.02562 * 24 22 21 48 48 H 1.08998 * 109.47443 * 300.00299 * 25 17 16 49 49 H 1.08997 * 109.47174 * 59.99667 * 26 25 17 50 50 H 1.09001 * 109.47239 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4441 -0.1215 6 1 4.1494 1.8091 0.6937 7 6 4.1413 0.9800 -1.2733 8 7 3.4096 0.7113 -2.3326 9 14 5.9920 0.7326 -1.3290 10 1 6.3289 -0.6068 -0.7835 11 1 6.4618 0.8272 -2.7345 12 1 6.6563 1.7808 -0.5134 13 7 1.6505 2.0982 1.2507 14 6 0.4330 2.6652 1.3636 15 8 -0.3399 2.6329 0.4295 16 6 0.0325 3.3403 2.6500 17 6 -1.3861 3.8969 2.5137 18 6 -1.4010 5.0016 1.4552 19 6 -2.8195 5.5586 1.3193 20 6 -3.2726 6.1335 2.6628 21 6 -2.3221 7.2561 3.0839 22 6 -0.9035 6.6989 3.2198 23 6 -0.4505 6.1241 1.8762 24 6 -0.8887 5.5943 4.2782 25 6 -1.8398 4.4716 3.8570 26 6 -3.2587 5.0277 3.7209 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.8311 0.3844 -3.1428 33 1 2.2688 2.1244 1.9977 34 1 0.0625 2.6167 3.4646 35 1 0.7235 4.1559 2.8628 36 1 -2.0631 3.0970 2.2134 37 1 -1.0778 4.5922 0.4981 38 1 -2.8300 6.3459 0.5655 39 1 -3.4967 4.7589 1.0193 40 1 -4.2830 6.5307 2.5659 41 1 -2.6446 7.6653 4.0412 42 1 -2.3326 8.0430 2.3298 43 1 -0.2263 7.4988 3.5193 44 1 -0.4610 6.9111 1.1221 45 1 0.5603 5.7277 1.9729 46 1 -1.2114 6.0038 5.2354 47 1 0.1219 5.1977 4.3753 48 1 -1.8292 3.6847 4.6111 49 1 -3.9353 4.2275 3.4209 50 1 -3.5817 5.4375 4.6779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153701708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:53 Heat of formation + Delta-G solvation = -99.753773 kcal Electronic energy + Delta-G solvation = -27102.325788 eV Core-core repulsion = 23705.139655 eV Total energy + Delta-G solvation = -3397.186133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52444 -40.36406 -36.94762 -34.67236 -34.24804 -33.44125 -33.37533 -32.83372 -29.89563 -28.59616 -26.68581 -25.71283 -24.74210 -22.54664 -22.25324 -22.19636 -21.38719 -20.86299 -18.75984 -18.13010 -17.30978 -17.11252 -16.58671 -16.10265 -15.87987 -15.46319 -15.26680 -15.02231 -14.76929 -14.58732 -14.16484 -14.12322 -13.90799 -13.85362 -13.45159 -13.30559 -13.24764 -13.12065 -13.03344 -12.83693 -12.61103 -12.47281 -12.19275 -12.10291 -11.82065 -11.71075 -11.65452 -11.62131 -11.56144 -11.44784 -11.07819 -10.66555 -10.51312 -10.42951 -10.38011 -10.15926 -9.51627 -8.19082 -6.31952 1.43394 1.44512 1.53924 2.01278 2.37921 2.77596 3.12432 3.62868 3.67429 3.70978 4.07217 4.22138 4.26773 4.29441 4.39908 4.42455 4.46228 4.47214 4.50071 4.50760 4.53549 4.64859 4.68994 4.73811 4.74794 4.85623 4.92750 4.96140 5.02634 5.06270 5.11593 5.21319 5.24158 5.24935 5.25855 5.30618 5.30763 5.34426 5.39564 5.43203 5.55300 5.63314 5.64915 5.69979 5.74895 5.76431 5.79720 5.99133 6.10789 6.78324 7.11471 7.35340 7.73090 8.89492 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.003609 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.840264 B = 7755.513627 C = 8116.239371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.712 5.712 14 C 0.495 3.505 15 O -0.582 6.582 16 C -0.131 4.131 17 C -0.050 4.050 18 C -0.086 4.086 19 C -0.106 4.106 20 C -0.084 4.084 21 C -0.103 4.103 22 C -0.083 4.083 23 C -0.109 4.109 24 C -0.107 4.107 25 C -0.078 4.078 26 C -0.105 4.105 27 H 0.048 0.952 28 H 0.023 0.977 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.401 0.599 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 10.837 16.843 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.361 5.361 14 C 0.283 3.717 15 O -0.463 6.463 16 C -0.170 4.170 17 C -0.069 4.069 18 C -0.105 4.105 19 C -0.143 4.143 20 C -0.102 4.102 21 C -0.141 4.141 22 C -0.101 4.101 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.096 4.096 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.235 0.765 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.785 10.749 15.986 22.078 hybrid contribution 1.267 -0.502 -0.904 1.635 sum -9.518 10.248 15.083 20.569 Atomic orbital electron populations 1.21660 0.96670 0.99143 1.00458 1.21691 0.94080 0.99213 1.00085 1.18285 0.93469 0.88924 0.81946 0.98321 1.21573 0.91587 1.43543 1.02035 0.91117 1.25774 1.03106 0.94862 0.94596 1.70146 1.37744 1.44888 1.02770 0.85459 0.79369 0.79048 0.77088 1.19567 1.21451 1.18773 1.46312 1.16011 1.56509 1.17265 1.21336 0.81421 0.78272 0.90692 1.90621 1.52415 1.60692 1.42569 1.21889 0.99316 1.01402 0.94437 1.20740 0.94054 0.96388 0.95717 1.21072 0.95737 0.95233 0.98451 1.21498 0.95731 0.99368 0.97739 1.21065 0.99063 0.95955 0.94113 1.21517 0.94165 0.96750 1.01627 1.21050 0.97117 0.97709 0.94258 1.21572 0.98189 0.97236 0.97692 1.21600 0.99525 0.95128 0.98203 1.21100 0.95442 0.97847 0.95224 1.21531 0.95913 0.97614 0.99145 0.93279 0.95783 0.93573 0.93374 0.93426 0.92731 0.76477 0.87265 0.87531 0.93111 0.93529 0.92854 0.93452 0.90692 0.90423 0.92472 0.90537 0.93156 0.93012 0.90254 0.91494 0.90069 0.92670 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.99 0.61 -4.89 16 2 C -0.11 -5.48 5.50 30.60 0.17 -5.31 16 3 C 0.28 14.33 2.11 44.24 0.09 14.42 16 4 H 0.00 -0.07 7.52 -2.38 -0.02 -0.09 16 5 C -0.55 -29.33 8.66 25.60 0.22 -29.11 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.92 5.16 84.65 0.44 1.36 16 8 N -0.92 -53.94 12.16 21.45 0.26 -53.68 16 9 Si 0.97 42.48 29.55 68.60 2.03 44.50 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 13 N -0.71 -29.14 5.02 -446.12 -2.24 -31.38 16 14 C 0.49 19.02 6.11 87.66 0.54 19.55 16 15 O -0.58 -27.13 11.10 -3.02 -0.03 -27.16 16 16 C -0.13 -3.47 4.47 29.85 0.13 -3.33 16 17 C -0.05 -1.29 1.58 -10.80 -0.02 -1.31 16 18 C -0.09 -2.47 2.46 -10.79 -0.03 -2.50 16 19 C -0.11 -2.63 5.19 30.59 0.16 -2.47 16 20 C -0.08 -1.54 3.19 -10.78 -0.03 -1.58 16 21 C -0.10 -1.70 5.19 30.60 0.16 -1.54 16 22 C -0.08 -1.50 3.19 -10.79 -0.03 -1.54 16 23 C -0.11 -2.71 4.92 30.59 0.15 -2.56 16 24 C -0.11 -1.71 4.92 30.61 0.15 -1.56 16 25 C -0.08 -1.43 2.72 -10.78 -0.03 -1.46 16 26 C -0.10 -1.78 5.20 30.61 0.16 -1.62 16 27 H 0.05 2.12 5.65 -2.39 -0.01 2.11 16 28 H 0.02 1.18 7.84 -2.39 -0.02 1.16 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 2.64 6.80 -2.39 -0.02 2.62 16 31 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 33 H 0.40 13.87 8.53 -92.70 -0.79 13.08 16 34 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.11 2.51 4.82 -2.39 -0.01 2.50 16 36 H 0.05 1.55 7.96 -2.38 -0.02 1.53 16 37 H 0.05 1.79 5.95 -2.39 -0.01 1.77 16 38 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.37 6.32 -2.39 -0.02 1.35 16 46 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 1.05 6.54 -2.39 -0.02 1.04 16 48 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.98 356.22 2.98 -63.00 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.12 Total: 30.17 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 2.84 Total: -25.45 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.98 Total: -85.06 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.03 Total: -27.16 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -65.98 2.98 -63.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153701708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.749 kcal (2) G-P(sol) polarization free energy of solvation -65.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds