Wall clock time and date at job start Tue Mar 31 2020 09:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00320 * 2 1 4 4 H 1.48498 * 109.46736 * 269.99740 * 3 2 1 5 5 H 1.48503 * 109.47092 * 29.99055 * 3 2 1 6 6 H 1.48494 * 109.47570 * 149.99392 * 3 2 1 7 7 C 1.37873 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00695 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99896 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.35887 * 117.00239 * 180.02562 * 10 9 7 12 12 C 1.39854 * 119.56506 * 0.02562 * 11 10 9 13 13 C 1.35984 * 120.92959 * 180.28061 * 12 11 10 14 14 C 1.40597 * 119.73316 * 359.45226 * 13 12 11 15 15 C 1.40516 * 121.21583 * 180.24498 * 14 13 12 16 16 C 1.36188 * 119.66319 * 180.31137 * 15 14 13 17 17 Br 1.89099 * 119.50707 * 179.97438 * 16 15 14 18 18 C 1.39448 * 120.97648 * 359.97438 * 16 15 14 19 19 C 1.36071 * 120.97117 * 0.02562 * 18 16 15 20 20 C 1.40585 * 119.67217 * 359.97438 * 19 18 16 21 21 C 1.36568 * 119.56941 * 180.02562 * 11 10 9 22 22 H 0.97001 * 120.00142 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47045 * 59.99857 * 9 7 2 24 24 H 1.08994 * 109.47173 * 299.99614 * 9 7 2 25 25 H 1.08002 * 119.53160 * 359.97438 * 12 11 10 26 26 H 1.08002 * 120.13418 * 179.70220 * 13 12 11 27 27 H 1.07995 * 120.16457 * 0.33454 * 15 14 13 28 28 H 1.08004 * 119.51410 * 179.97438 * 18 16 15 29 29 H 1.08000 * 120.16532 * 180.02562 * 19 18 16 30 30 H 1.07998 * 120.18533 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.6601 -4.8410 0.0000 12 6 0.2723 -5.0138 -0.0011 13 6 -0.2772 -6.2576 0.0041 14 6 0.5577 -7.3888 -0.0011 15 6 0.0232 -8.6884 -0.0011 16 6 0.8614 -9.7618 0.0002 17 35 0.1374 -11.5087 0.0009 18 6 2.2454 -9.5917 0.0011 19 6 2.7981 -8.3483 0.0012 20 6 1.9646 -7.2162 -0.0002 21 6 2.5002 -5.9178 0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5570 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 -0.3720 -4.1470 -0.0010 26 1 -1.3507 -6.3761 0.0080 27 1 -1.0467 -8.8351 -0.0026 28 1 2.8882 -10.4597 0.0026 29 1 3.8718 -8.2317 0.0014 30 1 3.5702 -5.7717 0.0009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019481707.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:59 Heat of formation + Delta-G solvation = -4.726340 kcal Electronic energy + Delta-G solvation = -15939.440960 eV Core-core repulsion = 13131.605964 eV Total energy + Delta-G solvation = -2807.834996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 306.000 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.37238 -38.32252 -35.43084 -33.05818 -32.76964 -31.10000 -29.64961 -28.59317 -27.13139 -23.80328 -22.97873 -22.00595 -21.61891 -17.68747 -17.15178 -16.91113 -16.00976 -15.39875 -14.81832 -14.66180 -14.55796 -13.88973 -13.54165 -13.36958 -13.14792 -12.68695 -12.32778 -11.85570 -11.51976 -11.28405 -11.11903 -11.01764 -10.65996 -10.59955 -10.37795 -10.25709 -10.21989 -9.40140 -9.37782 -8.64954 -8.24423 -7.37426 -6.32605 -4.36762 0.58393 1.04419 1.57907 2.15138 3.02270 3.19732 3.25251 3.29764 4.04072 4.21642 4.39211 4.64499 4.85818 5.03137 5.05034 5.17394 5.23226 5.38707 5.50410 5.69573 5.85157 5.94424 6.10881 6.31147 6.34617 6.51869 6.59145 6.80352 6.83066 7.01998 7.03384 7.59464 7.85255 8.31608 8.74661 9.28984 10.78600 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.062125 B = 0.002628 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.594006 B =10650.428323 C =11085.878232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.190 3.810 10 O -0.312 6.312 11 C 0.171 3.829 12 C -0.179 4.179 13 C -0.068 4.068 14 C -0.095 4.095 15 C -0.051 4.051 16 C -0.111 4.111 17 Br -0.068 7.068 18 C -0.094 4.094 19 C -0.106 4.106 20 C 0.003 3.997 21 C -0.188 4.188 22 H 0.268 0.732 23 H 0.023 0.977 24 H 0.024 0.976 25 H 0.141 0.859 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -21.537 0.006 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.090 0.910 9 C 0.117 3.883 10 O -0.224 6.224 11 C 0.122 3.878 12 C -0.198 4.198 13 C -0.086 4.086 14 C -0.096 4.096 15 C -0.071 4.071 16 C -0.190 4.190 17 Br 0.017 6.983 18 C -0.113 4.113 19 C -0.125 4.125 20 C 0.002 3.998 21 C -0.207 4.207 22 H 0.078 0.922 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.159 0.841 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.680 -21.971 0.012 21.982 hybrid contribution 0.176 1.350 -0.012 1.361 sum -0.504 -20.622 0.000 20.628 Atomic orbital electron populations 1.69936 1.06150 1.27760 1.49356 1.24935 0.95067 0.99602 0.94538 0.86229 0.79638 0.81623 0.78444 1.20229 1.20856 1.19441 1.20960 0.94326 0.88629 1.52507 0.91044 1.20729 0.88706 0.81819 0.97010 1.86177 1.39171 1.11766 1.85326 1.19027 0.91381 0.86795 0.90597 1.21443 0.95018 0.99026 1.04264 1.20848 0.99322 0.91109 0.97354 1.17898 0.92927 0.92965 1.05834 1.20940 0.99402 0.90590 0.96181 1.21233 0.95398 0.90322 1.12088 1.96653 1.85258 1.18363 1.97983 1.20618 0.92653 0.97993 1.00048 1.20937 0.99695 0.91048 1.00843 1.17816 0.92184 0.93137 0.96617 1.20101 0.99889 0.89264 1.11435 0.92230 0.95889 0.95869 0.84107 0.85197 0.84994 0.85485 0.84900 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -14.62 9.43 -34.44 -0.32 -14.95 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 4.84 4.48 36.01 0.16 5.00 16 10 O -0.31 -7.26 10.09 -19.39 -0.20 -7.45 16 11 C 0.17 3.32 6.63 -39.58 -0.26 3.06 16 12 C -0.18 -3.16 8.93 -39.79 -0.36 -3.51 16 13 C -0.07 -1.00 9.76 -39.50 -0.39 -1.39 16 14 C -0.10 -1.38 5.74 -106.81 -0.61 -2.00 16 15 C -0.05 -0.64 9.46 -39.46 -0.37 -1.02 16 16 C -0.11 -1.34 6.18 -39.87 -0.25 -1.59 16 17 Br -0.07 -0.71 33.65 -68.01 -2.29 -3.00 16 18 C -0.09 -1.08 9.67 -39.91 -0.39 -1.47 16 19 C -0.11 -1.32 9.77 -39.48 -0.39 -1.71 16 20 C 0.00 0.04 5.74 -106.84 -0.61 -0.57 16 21 C -0.19 -3.16 9.68 -39.35 -0.38 -3.54 16 22 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.02 0.61 7.63 -51.93 -0.40 0.21 16 24 H 0.02 0.61 7.64 -51.93 -0.40 0.21 16 25 H 0.14 2.57 6.21 -52.49 -0.33 2.24 16 26 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 286.73 15.07 4.32 4.32 Total: -1.00 -28.43 286.73 -9.49 -37.92 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.78 Total: -0.98 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -4.26 Total: -22.11 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.74 Total: -24.47 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.20 Total: -7.45 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.29 Total: -3.00 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.43 -9.49 -37.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019481707.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.192 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds