Wall clock time and date at job start Tue Mar 31 2020 09:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 S 1.65603 * 119.99907 * 179.72167 * 9 7 2 11 11 O 1.42105 * 106.40201 * 178.54131 * 10 9 7 12 12 O 1.42098 * 106.40111 * 311.46355 * 10 9 7 13 13 C 1.76198 * 107.21666 * 64.99934 * 10 9 7 14 14 C 1.38265 * 119.98337 * 89.99751 * 13 10 9 15 15 C 1.38193 * 120.01172 * 179.97438 * 14 13 10 16 16 C 1.38380 * 119.98657 * 0.03011 * 15 14 13 17 17 Cl 1.73599 * 120.01248 * 180.02562 * 16 15 14 18 18 C 1.38326 * 119.97398 * 359.97438 * 16 15 14 19 19 N 1.48017 * 120.00775 * 179.97438 * 18 16 15 20 20 O 1.21803 * 119.99983 * 179.97438 * 19 18 16 21 21 O 1.21803 * 119.99963 * 0.02562 * 19 18 16 22 22 C 1.38215 * 119.98936 * 269.73001 * 13 10 9 23 23 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 25 25 H 1.07998 * 119.99680 * 0.02562 * 14 13 10 26 26 H 1.08003 * 120.01198 * 180.02562 * 15 14 13 27 27 H 1.08001 * 119.99078 * 359.97438 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 16 4.2075 -2.6363 0.0115 11 8 5.5885 -2.3025 -0.0182 12 8 3.6222 -3.4330 1.0322 13 6 3.8586 -3.4467 -1.5137 14 6 4.6638 -3.2228 -2.6152 15 6 4.3910 -3.8585 -3.8115 16 6 3.3114 -4.7187 -3.9071 17 17 2.9685 -5.5182 -5.4094 18 6 2.5062 -4.9423 -2.8048 19 7 1.3508 -5.8619 -2.9064 20 8 0.6421 -6.0590 -1.9356 21 8 1.1093 -6.4223 -3.9605 22 6 2.7835 -4.3102 -1.6070 23 1 -0.4851 0.8400 0.0004 24 1 3.8646 -0.3621 0.0055 25 1 5.5066 -2.5516 -2.5404 26 1 5.0203 -3.6839 -4.6718 27 1 2.1577 -4.4883 -0.7450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037489284.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:11:30 Heat of formation + Delta-G solvation = -41.086157 kcal Electronic energy + Delta-G solvation = -20666.588738 eV Core-core repulsion = 16967.675261 eV Total energy + Delta-G solvation = -3698.913477 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 305.995 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03462 -39.40922 -36.95285 -36.42839 -36.31117 -35.09166 -35.02674 -32.12524 -31.91283 -31.33114 -26.50279 -24.56592 -23.53783 -22.68061 -19.89863 -18.96357 -18.55165 -18.35842 -17.42902 -17.05070 -16.83942 -16.11777 -15.98656 -15.12595 -14.48842 -14.30020 -13.94400 -13.48699 -13.07218 -12.94674 -12.38659 -12.09984 -11.98996 -11.71937 -11.38805 -11.33824 -11.23622 -11.19643 -10.93448 -10.76185 -10.66751 -10.48039 -10.41836 -10.32230 -9.78200 -9.40779 -8.80916 -6.81108 -4.21796 -0.20363 0.48421 1.06148 1.31305 1.36365 1.68374 2.89367 2.92568 2.93010 2.98820 3.78574 3.86353 4.08115 4.39603 4.50142 4.62917 4.75146 4.87635 5.15207 5.25271 5.47228 5.51166 5.85298 6.09067 6.48445 6.51138 7.20756 7.79988 7.92048 8.52328 8.62430 10.26575 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.016483 B = 0.005523 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.317839 B = 5068.643142 C = 5470.195933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.050 3.950 3 Si 0.888 3.112 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.260 4.260 8 H 0.127 0.873 9 N -0.955 5.955 10 S 2.574 3.426 11 O -0.996 6.996 12 O -0.953 6.953 13 C -0.655 4.655 14 C 0.029 3.971 15 C -0.137 4.137 16 C 0.044 3.956 17 Cl -0.012 7.012 18 C -0.064 4.064 19 N 0.030 4.970 20 O -0.154 6.154 21 O -0.149 6.149 22 C 0.057 3.943 23 H 0.284 0.716 24 H 0.392 0.608 25 H 0.161 0.839 26 H 0.158 0.842 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 -3.062 -7.989 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.163 4.163 3 Si 0.713 3.287 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.406 4.406 8 H 0.144 0.856 9 N -0.704 5.704 10 S 2.666 3.334 11 O -0.985 6.985 12 O -0.943 6.943 13 C -0.731 4.731 14 C 0.010 3.990 15 C -0.157 4.157 16 C 0.015 3.985 17 Cl 0.018 6.982 18 C -0.149 4.149 19 N 0.551 4.449 20 O -0.369 6.369 21 O -0.366 6.366 22 C 0.037 3.963 23 H 0.095 0.905 24 H 0.226 0.774 25 H 0.179 0.821 26 H 0.175 0.825 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.136 -3.284 -7.505 11.546 hybrid contribution -0.228 0.813 -1.087 1.376 sum 7.908 -2.470 -8.592 11.936 Atomic orbital electron populations 1.69725 1.06036 1.29157 1.42706 1.25311 0.95540 0.99169 0.96286 0.86456 0.80356 0.82400 0.79477 1.19116 1.19521 1.18460 1.19322 0.78646 0.97320 1.45306 0.85582 1.52829 1.15573 1.22063 1.79912 1.09408 0.73482 0.73556 0.76998 1.93412 1.33910 1.83394 1.87767 1.93504 1.78069 1.68845 1.53893 1.32828 1.02644 1.10611 1.27015 1.21328 0.95442 0.92459 0.89786 1.21286 0.96740 0.97554 1.00138 1.20931 0.94805 0.95064 0.87699 1.98453 1.94151 1.77194 1.28434 1.21054 0.93430 1.03114 0.97296 1.43380 1.01120 0.99908 1.00528 1.94588 1.45853 1.67474 1.28985 1.94568 1.75935 1.48839 1.17273 1.20890 0.92959 0.87005 0.95439 0.90523 0.77362 0.82132 0.82466 0.80811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.84 13.97 55.49 0.78 -20.07 15 2 C 0.05 1.15 5.50 -17.43 -0.10 1.06 15 3 Si 0.89 17.11 27.74 -169.99 -4.72 12.39 15 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 6 H -0.26 -4.69 6.51 56.52 0.37 -4.32 15 7 C -0.26 -5.94 10.12 -15.06 -0.15 -6.09 15 8 H 0.13 3.04 8.05 -52.49 -0.42 2.61 15 9 N -0.95 -19.03 5.55 31.50 0.17 -18.85 15 10 S 2.57 48.92 5.70 -107.50 -0.61 48.30 15 11 O -1.00 -19.51 17.28 -57.17 -0.99 -20.50 15 12 O -0.95 -20.93 16.98 -57.17 -0.97 -21.90 15 13 C -0.65 -10.93 5.89 -39.58 -0.23 -11.16 15 14 C 0.03 0.40 9.52 -39.59 -0.38 0.02 15 15 C -0.14 -1.68 9.83 -39.55 -0.39 -2.07 15 16 C 0.04 0.63 6.32 -39.50 -0.25 0.38 15 17 Cl -0.01 -0.16 25.94 -51.86 -1.35 -1.50 15 18 C -0.06 -1.09 6.86 -79.91 -0.55 -1.63 15 19 N 0.03 0.55 4.45 33.98 0.15 0.70 15 20 O -0.15 -2.92 18.45 -29.46 -0.54 -3.47 15 21 O -0.15 -2.60 16.02 -29.46 -0.47 -3.07 15 22 C 0.06 1.00 9.03 -39.59 -0.36 0.64 15 23 H 0.28 6.52 8.31 -40.82 -0.34 6.18 15 24 H 0.39 7.17 5.88 -34.47 -0.20 6.97 15 25 H 0.16 1.78 7.62 -52.49 -0.40 1.38 15 26 H 0.16 1.33 8.06 -52.48 -0.42 0.91 15 27 H 0.17 3.10 7.16 -52.49 -0.38 2.73 15 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -27.83 280.96 -7.71 -35.53 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -0.99 Total: 7.05 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.40 Total: -18.86 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 1.10 Total: -38.22 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.97 Total: -48.94 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -4.72 Total: 12.39 kcal Atomic # 16 Polarization: 48.92 SS G_CDS: -0.61 Total: 48.30 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.35 Total: -1.50 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.83 -7.71 -35.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037489284.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.552 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds