Wall clock time and date at job start Tue Mar 31 2020 09:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99803 * 2 1 4 4 H 1.48507 * 109.47080 * 240.00119 * 3 2 1 5 5 H 1.48506 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47493 * 119.99852 * 3 2 1 7 7 C 1.37878 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00033 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00021 * 0.02562 * 7 2 1 10 10 O 1.42107 * 106.40170 * 66.45535 * 9 7 2 11 11 O 1.42095 * 106.40274 * 293.53953 * 9 7 2 12 12 N 1.65593 * 107.21938 * 179.97438 * 9 7 2 13 13 C 1.39053 * 119.99758 * 64.99816 * 12 9 7 14 14 C 1.39131 * 119.69145 * 179.97438 * 13 12 9 15 15 C 1.38305 * 119.10195 * 179.97438 * 14 13 12 16 16 C 1.38950 * 118.49636 * 0.02562 * 15 14 13 17 17 Br 1.89101 * 120.33918 * 179.97438 * 16 15 14 18 18 C 1.38091 * 119.31459 * 0.02562 * 16 15 14 19 19 N 1.31983 * 120.84455 * 359.97438 * 18 16 15 20 20 H 0.97000 * 119.99982 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00589 * 245.00096 * 12 9 7 22 22 H 1.07997 * 120.45216 * 0.25336 * 14 13 12 23 23 H 1.08006 * 120.74801 * 180.02562 * 15 14 13 24 24 H 1.08003 * 119.58278 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1237 -2.7200 0.0005 10 8 0.4519 -2.7955 -1.2495 11 8 0.4511 -2.7950 1.2500 12 7 2.2484 -3.9353 0.0005 13 6 3.0942 -4.0999 1.0919 14 6 4.0365 -5.1234 1.0854 15 6 4.8719 -5.2757 2.1771 16 6 4.7359 -4.3956 3.2437 17 35 5.8503 -4.5566 4.7630 18 6 3.7779 -3.4028 3.1833 19 7 2.9945 -3.2818 2.1280 20 1 -0.4850 0.8400 -0.0004 21 1 2.3174 -4.5324 -0.7607 22 1 4.1177 -5.7873 0.2375 23 1 5.6131 -6.0609 2.2000 24 1 3.6682 -2.7167 4.0101 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509607.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:20 Heat of formation + Delta-G solvation = -76.230422 kcal Electronic energy + Delta-G solvation = -15324.064900 eV Core-core repulsion = 12409.199768 eV Total energy + Delta-G solvation = -2914.865132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 305.946 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.36365 -37.45481 -36.45353 -36.17871 -35.14391 -33.76907 -32.33965 -29.48668 -28.24608 -24.97955 -23.86417 -21.07739 -19.79969 -19.21539 -18.35572 -17.19525 -16.93998 -16.50935 -16.14976 -15.82445 -15.45713 -15.31580 -14.15214 -14.00248 -13.42152 -13.18880 -13.06767 -12.98330 -12.78949 -12.52768 -12.40992 -12.32469 -11.64835 -11.38768 -11.21824 -10.91953 -10.80317 -10.43146 -9.31749 -8.73782 -7.42538 -0.05870 0.13618 0.24157 0.59379 1.32875 1.36096 1.48255 2.18470 2.49834 2.60429 2.65892 3.42787 3.61346 3.83326 3.86893 3.94851 4.33902 4.55349 4.70291 4.88947 5.07089 5.27616 5.45310 5.89354 5.94252 6.80100 6.93076 8.23016 Molecular weight = 305.95amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.005082 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.149760 B = 5508.758585 C = 6314.756081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.988 3.012 4 H -0.251 1.251 5 H -0.262 1.262 6 H -0.255 1.255 7 C -1.009 5.009 8 H 0.109 0.891 9 S 2.712 3.288 10 O -1.032 7.032 11 O -1.013 7.013 12 N -1.034 6.034 13 C 0.379 3.621 14 C -0.193 4.193 15 C -0.006 4.006 16 C -0.189 4.189 17 Br -0.023 7.023 18 C 0.163 3.837 19 N -0.542 5.542 20 H 0.298 0.702 21 H 0.439 0.561 22 H 0.183 0.817 23 H 0.186 0.814 24 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.825 -10.406 6.860 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.807 3.193 4 H -0.175 1.175 5 H -0.186 1.186 6 H -0.179 1.179 7 C -1.144 5.144 8 H 0.128 0.872 9 S 2.814 3.186 10 O -1.023 7.023 11 O -1.002 7.002 12 N -0.780 5.780 13 C 0.145 3.855 14 C -0.218 4.218 15 C -0.034 4.034 16 C -0.273 4.273 17 Br 0.061 6.939 18 C 0.003 3.997 19 N -0.258 5.258 20 H 0.108 0.892 21 H 0.277 0.723 22 H 0.200 0.800 23 H 0.204 0.796 24 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 14.359 -9.775 7.425 18.891 hybrid contribution 0.640 0.375 -0.707 1.024 sum 14.999 -9.400 6.719 18.933 Atomic orbital electron populations 1.69969 1.08550 1.32280 1.41770 1.25913 0.95372 1.05018 0.87682 0.85191 0.78799 0.74840 0.80477 1.17463 1.18632 1.17919 1.30443 1.06238 1.11609 1.66104 0.87245 1.00359 0.72415 0.74145 0.71714 1.93357 1.73861 1.88151 1.46889 1.93338 1.73448 1.87352 1.46101 1.53681 1.50713 1.49145 1.24418 1.18537 0.89199 0.91496 0.86233 1.21949 0.97120 1.00005 1.02752 1.21760 0.96293 0.96160 0.89157 1.22803 1.02917 1.03636 0.97896 1.96679 1.63808 1.97932 1.35499 1.22739 0.88028 0.94823 0.94101 1.67369 1.27835 1.28473 1.02085 0.89151 0.72272 0.79952 0.79639 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.66 13.19 21.45 0.28 -53.37 14 2 C 0.07 4.10 5.46 84.65 0.46 4.56 14 3 Si 0.99 42.18 29.54 68.60 2.03 44.21 14 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 14 5 H -0.26 -10.46 7.11 99.48 0.71 -9.75 14 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 14 7 C -1.01 -56.26 9.33 67.73 0.63 -55.63 14 8 H 0.11 5.66 7.81 -2.91 -0.02 5.64 14 9 S 2.71 146.65 4.65 -56.49 -0.26 146.39 14 10 O -1.03 -60.67 18.02 -128.00 -2.31 -62.98 14 11 O -1.01 -61.54 16.89 -128.00 -2.16 -63.70 14 12 N -1.03 -40.32 5.85 -55.41 -0.32 -40.65 14 13 C 0.38 13.66 7.33 133.05 0.98 14.64 14 14 C -0.19 -4.62 9.94 22.50 0.22 -4.40 14 15 C -0.01 -0.13 9.93 22.46 0.22 0.09 14 16 C -0.19 -4.69 6.24 22.41 0.14 -4.55 14 17 Br -0.02 -0.46 33.73 -20.37 -0.69 -1.14 14 18 C 0.16 5.28 10.93 84.64 0.93 6.20 14 19 N -0.54 -22.35 8.33 -193.17 -1.61 -23.96 14 20 H 0.30 16.14 8.31 -92.71 -0.77 15.37 14 21 H 0.44 13.06 8.82 -96.75 -0.85 12.20 14 22 H 0.18 2.80 8.06 -2.91 -0.02 2.77 14 23 H 0.19 2.21 8.06 -2.91 -0.02 2.19 14 24 H 0.17 5.02 8.06 -2.91 -0.02 5.00 14 Total: -1.00 -78.85 259.81 -1.06 -79.91 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.40 Total: 14.37 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 3.58 Total: -39.08 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -1.65 Total: -117.98 kcal Atomic # 8 Polarization: -122.21 SS G_CDS: -4.47 Total: -126.68 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 146.65 SS G_CDS: -0.26 Total: 146.39 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -0.69 Total: -1.14 kcal Total: -78.85 -1.06 -79.91 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509607.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.676 kcal (2) G-P(sol) polarization free energy of solvation -78.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds