Wall clock time and date at job start Tue Mar 31 2020 09:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00133 * 2 1 4 4 H 1.48504 * 109.47017 * 269.99649 * 3 2 1 5 5 H 1.48503 * 109.47224 * 29.99607 * 3 2 1 6 6 H 1.48495 * 109.47400 * 150.00019 * 3 2 1 7 7 C 1.37880 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00043 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 7 2 11 11 S 1.81391 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.42105 * 108.57942 * 294.48776 * 11 10 9 13 13 O 1.42097 * 108.57959 * 65.51305 * 11 10 9 14 14 C 1.81398 * 101.92304 * 179.97438 * 11 10 9 15 15 C 1.50702 * 109.47325 * 179.97438 * 14 11 10 16 16 C 1.38458 * 120.01827 * 269.72431 * 15 14 11 17 17 F 1.35100 * 120.01997 * 0.02562 * 16 15 14 18 18 C 1.38452 * 119.95987 * 179.71827 * 16 15 14 19 19 C 1.38224 * 119.99652 * 0.53678 * 18 16 15 20 20 C 1.38192 * 120.04413 * 359.76271 * 19 18 16 21 21 C 1.38287 * 120.01932 * 89.99955 * 15 14 11 22 22 Cl 1.73601 * 120.00214 * 0.02722 * 21 15 14 23 23 H 0.97004 * 119.99712 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47378 * 60.00090 * 9 7 2 25 25 H 1.09002 * 109.46895 * 299.99670 * 9 7 2 26 26 H 1.09003 * 109.46991 * 59.99248 * 10 9 7 27 27 H 1.09003 * 109.46903 * 300.00513 * 10 9 7 28 28 H 1.08998 * 109.47096 * 300.00087 * 14 11 10 29 29 H 1.09006 * 109.47169 * 59.99793 * 14 11 10 30 30 H 1.07998 * 119.99619 * 180.28010 * 18 16 15 31 31 H 1.08001 * 119.97843 * 179.74461 * 19 18 16 32 32 H 1.08001 * 119.98674 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6286 -5.3456 1.2274 13 8 0.6278 -5.3463 -1.2242 14 6 2.6877 -6.4450 0.0004 15 6 2.1122 -7.8378 0.0015 16 6 1.8542 -8.4797 1.2009 17 9 2.1178 -7.8576 2.3708 18 6 1.3200 -9.7570 1.2006 19 6 1.0550 -10.3949 0.0033 20 6 1.3182 -9.7567 -1.1938 21 6 1.8468 -8.4777 -1.1953 22 17 2.1771 -7.6769 -2.6997 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 3.3007 -6.3056 -0.8900 29 1 3.3021 -6.3054 0.8900 30 1 1.1144 -10.2565 2.1358 31 1 0.6421 -11.3929 0.0034 32 1 1.1111 -10.2561 -2.1287 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:24 Heat of formation + Delta-G solvation = -104.429527 kcal Electronic energy + Delta-G solvation = -20492.504442 eV Core-core repulsion = 16906.757324 eV Total energy + Delta-G solvation = -3585.747118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.028 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.14636 -39.57192 -36.68639 -36.44412 -35.51164 -33.88089 -33.42255 -31.18083 -30.76337 -27.82713 -25.56885 -23.21169 -22.50370 -21.33630 -18.47405 -18.03213 -17.17274 -17.05989 -16.40376 -16.14425 -15.54597 -15.45947 -15.19777 -14.97603 -14.51031 -13.95497 -13.87458 -13.47270 -13.39162 -13.00861 -12.50318 -12.16910 -11.80516 -11.74050 -11.65567 -11.51280 -11.44946 -11.11455 -11.06866 -10.98781 -10.93367 -10.37645 -10.35146 -9.71879 -9.26107 -9.02353 -8.91684 -8.48320 -6.10463 -4.16362 0.16617 0.66043 0.84736 1.79129 3.05784 3.19228 3.27392 3.33536 3.36250 3.76853 3.91719 4.14241 4.28808 4.39131 4.48142 4.59209 4.81527 4.96067 5.02969 5.24604 5.31842 5.54369 5.60895 5.65033 5.68570 5.68712 5.81883 6.33553 6.47646 7.35115 7.40736 7.82170 8.18591 8.87067 9.48078 11.00469 Molecular weight = 306.03amu Principal moments of inertia in cm(-1) A = 0.026431 B = 0.003900 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.126911 B = 7178.327161 C = 7735.246117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.570 4.570 11 S 2.392 3.608 12 O -0.934 6.934 13 O -0.926 6.926 14 C -0.594 4.594 15 C -0.110 4.110 16 C 0.128 3.872 17 F -0.119 7.119 18 C -0.150 4.150 19 C -0.075 4.075 20 C -0.121 4.121 21 C 0.000 4.000 22 Cl -0.035 7.035 23 H 0.265 0.735 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.899 -21.915 -1.147 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.703 4.703 11 S 2.575 3.425 12 O -0.932 6.932 13 O -0.923 6.923 14 C -0.716 4.716 15 C -0.113 4.113 16 C 0.107 3.893 17 F -0.097 7.097 18 C -0.169 4.169 19 C -0.094 4.094 20 C -0.140 4.140 21 C -0.028 4.028 22 Cl -0.006 7.006 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.892 -21.908 -1.232 22.481 hybrid contribution 1.508 1.201 0.106 1.931 sum 6.400 -20.707 -1.127 21.703 Atomic orbital electron populations 1.69966 1.06110 1.27177 1.49466 1.25067 0.94975 0.99502 0.94903 0.86467 0.79714 0.82853 0.78238 1.20452 1.20984 1.19738 1.21016 0.93081 0.89717 1.52309 0.91997 1.18995 0.92682 0.90014 0.99255 1.30223 1.13452 1.16481 1.10111 1.09164 0.78442 0.78962 0.75889 1.93559 1.68372 1.85731 1.45492 1.93565 1.68151 1.85561 1.45067 1.29642 1.21024 1.08012 1.12915 1.18848 1.04982 0.95703 0.91719 1.17356 0.99605 0.91621 0.80688 1.91576 1.91179 1.82234 1.44748 1.21282 1.01439 0.93579 1.00607 1.21035 0.97448 1.00205 0.90665 1.21144 0.99920 0.92973 0.99941 1.20666 1.00972 0.93919 0.87218 1.98421 1.93298 1.79311 1.29540 0.92524 0.94528 0.94605 0.86082 0.86002 0.83512 0.83640 0.83504 0.83598 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 10 C -0.57 -10.93 5.74 37.16 0.21 -10.72 16 11 S 2.39 43.65 4.70 -107.50 -0.51 43.15 16 12 O -0.93 -19.98 18.10 -57.83 -1.05 -21.02 16 13 O -0.93 -19.00 17.55 -57.83 -1.01 -20.02 16 14 C -0.59 -7.91 5.36 36.01 0.19 -7.71 16 15 C -0.11 -1.49 5.15 -104.52 -0.54 -2.02 16 16 C 0.13 1.65 7.24 -39.42 -0.29 1.36 16 17 F -0.12 -1.68 16.47 2.25 0.04 -1.64 16 18 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 19 C -0.07 -0.59 10.04 -39.60 -0.40 -0.99 16 20 C -0.12 -1.13 9.83 -39.54 -0.39 -1.52 16 21 C 0.00 0.00 6.31 -39.51 -0.25 -0.25 16 22 Cl -0.04 -0.45 26.75 -51.86 -1.39 -1.83 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 27 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 28 H 0.15 1.62 6.90 -51.93 -0.36 1.27 16 29 H 0.15 1.59 7.63 -51.92 -0.40 1.19 16 30 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -35.26 314.31 -9.12 -44.38 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.26 Total: -1.70 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: -2.40 Total: -36.35 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.74 Total: -25.96 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -2.06 Total: -41.04 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 43.65 SS G_CDS: -0.51 Total: 43.15 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.39 Total: -1.83 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.26 -9.12 -44.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.051 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds