Wall clock time and date at job start Tue Mar 31 2020 09:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99699 * 2 1 4 4 H 1.48499 * 109.46683 * 269.99765 * 3 2 1 5 5 H 1.48502 * 109.47068 * 30.00045 * 3 2 1 6 6 H 1.48499 * 109.46679 * 150.00038 * 3 2 1 7 7 C 1.37875 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00002 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99768 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46834 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47348 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47617 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54207 * 68.37401 * 12 11 10 14 14 O 1.42101 * 110.54520 * 291.62580 * 12 11 10 15 15 C 1.76196 * 104.45115 * 179.97438 * 12 11 10 16 16 C 1.38264 * 119.97320 * 269.97659 * 15 12 11 17 17 C 1.38193 * 120.05336 * 179.97438 * 16 15 12 18 18 C 1.38447 * 119.98583 * 0.04183 * 17 16 15 19 19 F 1.35098 * 120.03314 * 180.25332 * 18 17 16 20 20 C 1.38555 * 119.93778 * 359.97438 * 18 17 16 21 21 Cl 1.73602 * 120.02332 * 180.02562 * 20 18 17 22 22 C 1.38218 * 119.96621 * 90.00392 * 15 12 11 23 23 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47198 * 60.00805 * 9 7 2 25 25 H 1.08994 * 109.47195 * 300.00077 * 9 7 2 26 26 H 1.09000 * 109.47369 * 60.00099 * 10 9 7 27 27 H 1.09007 * 109.47183 * 299.99911 * 10 9 7 28 28 H 1.09000 * 109.47045 * 59.99606 * 11 10 9 29 29 H 1.09007 * 109.46666 * 299.99933 * 11 10 9 30 30 H 1.07998 * 119.97540 * 0.02562 * 16 15 12 31 31 H 1.08000 * 120.00965 * 180.02562 * 17 16 15 32 32 H 1.07992 * 119.99809 * 0.02562 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6365 0.0001 12 16 6.1563 -4.3466 0.0010 13 8 5.8602 -4.9809 -1.2357 14 8 5.8602 -4.9796 1.2383 15 6 7.9115 -4.1924 0.0003 16 6 8.5992 -4.1332 -1.1978 17 6 9.9758 -4.0116 -1.2003 18 6 10.6672 -3.9500 -0.0024 19 9 12.0124 -3.8260 -0.0038 20 6 9.9776 -4.0096 1.1978 21 17 10.8423 -3.9318 2.7012 22 6 8.5997 -4.1312 1.1974 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8745 -0.6807 -0.8905 26 1 3.6579 -3.1505 -0.8896 27 1 3.6586 -3.1501 0.8904 28 1 5.9149 -2.1225 0.8901 29 1 5.9149 -2.1227 -0.8900 30 1 8.0601 -4.1811 -2.1323 31 1 10.5122 -3.9650 -2.1365 32 1 8.0616 -4.1784 2.1325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068557007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:59 Heat of formation + Delta-G solvation = -105.125303 kcal Electronic energy + Delta-G solvation = -19846.866880 eV Core-core repulsion = 16261.089590 eV Total energy + Delta-G solvation = -3585.777290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.028 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.62057 -39.61380 -37.16535 -37.02080 -35.97148 -34.91441 -32.27686 -31.69235 -31.26400 -28.47430 -24.13034 -23.82330 -23.36844 -20.54732 -19.32548 -18.56394 -17.59479 -17.37458 -16.95800 -16.40051 -15.98297 -15.83440 -15.57114 -14.59638 -14.45599 -14.24380 -14.08564 -13.83751 -13.65258 -12.98743 -12.45028 -12.26936 -12.19904 -12.17123 -12.07200 -11.94976 -11.72209 -11.63321 -11.11988 -11.04857 -10.99821 -10.15867 -9.93340 -9.85880 -9.62857 -9.42324 -9.31008 -8.62516 -6.12060 -4.11921 -0.15157 0.14487 0.42382 1.45569 2.55508 2.80051 3.23832 3.32022 3.33143 3.38404 3.78191 3.88959 4.09607 4.36825 4.42066 4.55735 4.72779 4.87997 4.99018 5.05580 5.20186 5.21594 5.37236 5.42287 5.61908 5.97418 6.05219 6.16077 6.58239 7.06147 7.20023 7.66286 8.43031 8.92176 9.48727 11.01124 Molecular weight = 306.03amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.003325 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.506329 B = 8418.033091 C = 8818.293373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.100 4.100 11 C -0.589 4.589 12 S 2.486 3.514 13 O -0.933 6.933 14 O -0.933 6.933 15 C -0.661 4.661 16 C 0.010 3.990 17 C -0.163 4.163 18 C 0.159 3.841 19 F -0.119 7.119 20 C -0.098 4.098 21 Cl -0.039 7.039 22 C 0.014 3.986 23 H 0.264 0.736 24 H 0.021 0.979 25 H 0.017 0.983 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.408 -7.065 -0.228 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.139 4.139 11 C -0.721 4.721 12 S 2.666 3.334 13 O -0.930 6.930 14 O -0.930 6.930 15 C -0.745 4.745 16 C -0.008 4.008 17 C -0.182 4.182 18 C 0.138 3.862 19 F -0.097 7.097 20 C -0.127 4.127 21 Cl -0.010 7.010 22 C -0.005 4.005 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.035 0.965 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 23.004 -7.742 -0.083 24.272 hybrid contribution 1.470 1.654 0.140 2.217 sum 24.474 -6.088 0.058 25.220 Atomic orbital electron populations 1.69906 1.06299 1.27043 1.50519 1.25021 0.94749 0.99167 0.94412 0.86791 0.80339 0.83658 0.78557 1.20196 1.21245 1.19027 1.21112 0.89156 0.94814 1.51559 0.90650 1.19543 0.97424 0.90475 0.96899 1.21406 0.86092 1.03197 1.03252 1.30338 1.09507 1.20325 1.11928 1.06084 0.73252 0.79019 0.75015 1.93572 1.82290 1.72809 1.44319 1.93575 1.82300 1.72854 1.44261 1.31123 1.28079 1.17047 0.98238 1.21015 0.93477 0.88605 0.97746 1.21309 0.95089 1.04759 0.97067 1.17684 0.77540 0.97700 0.93226 1.91584 1.28499 1.92326 1.97271 1.21064 0.93590 1.10690 0.87335 1.98411 1.76120 1.96777 1.29734 1.20838 0.91352 0.89650 0.98675 0.92571 0.96025 0.96474 0.90614 0.90598 0.84769 0.84750 0.82110 0.82638 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.53 -14.47 9.66 -34.44 -0.33 -14.81 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.10 4.04 -27.88 -0.11 -0.22 16 10 C -0.10 -1.77 5.16 -26.73 -0.14 -1.90 16 11 C -0.59 -7.24 5.98 37.16 0.22 -7.02 16 12 S 2.49 30.68 5.16 -107.50 -0.55 30.12 16 13 O -0.93 -13.70 17.12 -57.54 -0.99 -14.69 16 14 O -0.93 -14.05 17.13 -57.54 -0.99 -15.03 16 15 C -0.66 -6.70 5.66 -39.58 -0.22 -6.93 16 16 C 0.01 0.09 9.47 -39.59 -0.37 -0.29 16 17 C -0.16 -1.27 10.03 -39.52 -0.40 -1.66 16 18 C 0.16 1.48 7.28 -39.39 -0.29 1.20 16 19 F -0.12 -1.14 16.84 2.25 0.04 -1.10 16 20 C -0.10 -0.98 6.33 -39.43 -0.25 -1.23 16 21 Cl -0.04 -0.38 28.62 -51.86 -1.48 -1.86 16 22 C 0.01 0.14 9.25 -39.56 -0.37 -0.22 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 25 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.13 1.37 8.14 -51.92 -0.42 0.95 16 29 H 0.13 1.33 8.14 -51.92 -0.42 0.90 16 30 H 0.16 1.08 7.57 -52.49 -0.40 0.68 16 31 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.16 1.46 7.57 -52.49 -0.40 1.06 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -33.74 312.19 -8.78 -42.52 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.26 Total: -3.22 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: -2.36 Total: -31.25 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.77 Total: -26.30 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.97 Total: -29.72 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Atomic # 16 Polarization: 30.68 SS G_CDS: -0.55 Total: 30.12 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.48 Total: -1.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.74 -8.78 -42.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068557007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.607 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds