Wall clock time and date at job start Tue Mar 31 2020 09:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99699 * 2 1 4 4 H 1.48499 * 109.46683 * 269.99765 * 3 2 1 5 5 H 1.48502 * 109.47068 * 30.00045 * 3 2 1 6 6 H 1.48499 * 109.46679 * 150.00038 * 3 2 1 7 7 C 1.37875 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00002 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99768 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46834 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47348 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47617 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54207 * 68.37401 * 12 11 10 14 14 O 1.42101 * 110.54520 * 291.62580 * 12 11 10 15 15 C 1.76196 * 104.45115 * 179.97438 * 12 11 10 16 16 C 1.38264 * 119.97320 * 269.97659 * 15 12 11 17 17 C 1.38193 * 120.05336 * 179.97438 * 16 15 12 18 18 C 1.38447 * 119.98583 * 0.04183 * 17 16 15 19 19 F 1.35098 * 120.03314 * 180.25332 * 18 17 16 20 20 C 1.38555 * 119.93778 * 359.97438 * 18 17 16 21 21 Cl 1.73602 * 120.02332 * 180.02562 * 20 18 17 22 22 C 1.38218 * 119.96621 * 90.00392 * 15 12 11 23 23 H 0.97000 * 120.00260 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47198 * 60.00805 * 9 7 2 25 25 H 1.08994 * 109.47195 * 300.00077 * 9 7 2 26 26 H 1.09000 * 109.47369 * 60.00099 * 10 9 7 27 27 H 1.09007 * 109.47183 * 299.99911 * 10 9 7 28 28 H 1.09000 * 109.47045 * 59.99606 * 11 10 9 29 29 H 1.09007 * 109.46666 * 299.99933 * 11 10 9 30 30 H 1.07998 * 119.97540 * 0.02562 * 16 15 12 31 31 H 1.08000 * 120.00965 * 180.02562 * 17 16 15 32 32 H 1.07992 * 119.99809 * 0.02562 * 22 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6364 0.0001 11 6 5.5516 -2.6365 0.0001 12 16 6.1563 -4.3466 0.0010 13 8 5.8602 -4.9809 -1.2357 14 8 5.8602 -4.9796 1.2383 15 6 7.9115 -4.1924 0.0003 16 6 8.5992 -4.1332 -1.1978 17 6 9.9758 -4.0116 -1.2003 18 6 10.6672 -3.9500 -0.0024 19 9 12.0124 -3.8260 -0.0038 20 6 9.9776 -4.0096 1.1978 21 17 10.8423 -3.9318 2.7012 22 6 8.5997 -4.1312 1.1974 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6796 0.8895 25 1 3.8745 -0.6807 -0.8905 26 1 3.6579 -3.1505 -0.8896 27 1 3.6586 -3.1501 0.8904 28 1 5.9149 -2.1225 0.8901 29 1 5.9149 -2.1227 -0.8900 30 1 8.0601 -4.1811 -2.1323 31 1 10.5122 -3.9650 -2.1365 32 1 8.0616 -4.1784 2.1325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068557007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:58 Heat of formation + Delta-G solvation = -127.676288 kcal Electronic energy + Delta-G solvation = -19847.844764 eV Core-core repulsion = 16261.089590 eV Total energy + Delta-G solvation = -3586.755174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.028 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.32301 -40.31302 -38.21863 -37.75927 -37.04968 -36.47157 -34.21995 -32.37442 -31.98928 -30.13076 -25.47845 -24.58268 -24.37540 -22.13135 -20.24229 -19.35789 -18.94268 -18.44085 -18.11933 -17.23458 -17.01775 -16.85613 -16.32052 -16.18439 -15.75399 -15.16841 -14.88862 -14.78755 -14.56013 -14.38055 -14.03244 -13.62668 -13.19348 -13.19016 -13.14363 -12.93727 -12.75567 -12.66951 -12.52505 -12.46546 -11.95409 -11.81335 -11.59426 -11.36563 -11.17990 -10.74138 -10.44453 -10.15693 -8.26694 -6.32315 -1.06026 -0.65799 -0.25084 0.74238 1.39849 1.42389 1.53525 1.78961 1.95143 2.39163 2.70202 2.82082 3.06681 3.09075 3.37535 3.72442 3.75976 3.84125 3.96034 4.14679 4.38760 4.43269 4.51196 4.65524 4.72566 4.75826 4.88707 5.00816 5.33161 5.40224 5.51400 5.66497 6.28818 6.76861 7.32454 8.90249 Molecular weight = 306.03amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.003325 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.506329 B = 8418.033091 C = 8818.293373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.542 4.542 8 H 0.031 0.969 9 C -0.007 4.007 10 C -0.108 4.108 11 C -0.584 4.584 12 S 2.504 3.496 13 O -0.960 6.960 14 O -0.967 6.967 15 C -0.658 4.658 16 C 0.010 3.990 17 C -0.151 4.151 18 C 0.154 3.846 19 F -0.121 7.121 20 C -0.108 4.108 21 Cl -0.042 7.042 22 C 0.005 3.995 23 H 0.266 0.734 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.182 0.818 31 H 0.188 0.812 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.529 -5.834 -1.043 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.160 1.160 7 C -0.580 4.580 8 H 0.050 0.950 9 C -0.046 4.046 10 C -0.146 4.146 11 C -0.716 4.716 12 S 2.688 3.312 13 O -0.957 6.957 14 O -0.964 6.964 15 C -0.746 4.746 16 C -0.008 4.008 17 C -0.170 4.170 18 C 0.133 3.867 19 F -0.099 7.099 20 C -0.137 4.137 21 Cl -0.013 7.013 22 C -0.014 4.014 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.179 0.821 29 H 0.185 0.815 30 H 0.199 0.801 31 H 0.205 0.795 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 26.108 -6.539 -0.895 26.929 hybrid contribution 0.508 1.173 0.381 1.334 sum 26.616 -5.365 -0.513 27.156 Atomic orbital electron populations 1.70087 1.08572 1.28237 1.52558 1.26103 0.95641 1.03864 0.94022 0.85624 0.79759 0.77695 0.79375 1.18914 1.21513 1.15962 1.21581 0.92482 0.93244 1.50699 0.95046 1.19531 0.93553 0.93547 0.97972 1.21258 0.90161 1.00464 1.02765 1.30241 1.05345 1.20980 1.14995 1.05173 0.73859 0.78537 0.73637 1.93535 1.83390 1.73601 1.45176 1.93533 1.83520 1.73833 1.45532 1.30624 1.25964 1.18801 0.99162 1.21345 0.93989 0.87624 0.97873 1.21633 0.94732 1.02895 0.97726 1.17896 0.77535 0.97654 0.93603 1.91582 1.28696 1.92331 1.97295 1.21147 0.93643 1.11269 0.87628 1.98409 1.76100 1.96822 1.29995 1.20924 0.91578 0.89935 0.98965 0.92528 0.94849 0.94731 0.91214 0.91548 0.82144 0.81514 0.80068 0.79454 0.81462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 2 C 0.00 0.01 5.47 84.65 0.46 0.48 16 3 Si 0.95 41.91 27.47 68.60 1.88 43.80 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 7 C -0.54 -30.27 9.66 25.60 0.25 -30.02 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.11 -3.68 5.16 30.59 0.16 -3.53 16 11 C -0.58 -12.69 5.98 71.98 0.43 -12.26 16 12 S 2.50 57.95 5.16 -56.49 -0.29 57.66 16 13 O -0.96 -26.97 17.12 -127.65 -2.19 -29.16 16 14 O -0.97 -28.71 17.13 -127.65 -2.19 -30.89 16 15 C -0.66 -11.71 5.66 22.27 0.13 -11.58 16 16 C 0.01 0.14 9.47 22.27 0.21 0.35 16 17 C -0.15 -1.78 10.03 22.31 0.22 -1.55 16 18 C 0.15 2.45 7.28 22.40 0.16 2.61 16 19 F -0.12 -2.02 16.84 44.97 0.76 -1.26 16 20 C -0.11 -1.94 6.33 22.37 0.14 -1.80 16 21 Cl -0.04 -0.76 28.62 -2.72 -0.08 -0.83 16 22 C 0.01 0.10 9.25 22.29 0.21 0.30 16 23 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 24 H 0.03 1.33 7.20 -2.39 -0.02 1.32 16 25 H 0.03 1.34 7.57 -2.39 -0.02 1.33 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.17 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.18 1.72 7.57 -2.91 -0.02 1.70 16 31 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.17 2.79 7.57 -2.91 -0.02 2.77 16 Total: -1.00 -75.06 312.19 1.78 -73.28 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.09 Total: 3.54 kcal Atomic # 6 Polarization: -59.69 SS G_CDS: 2.49 Total: -57.20 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.30 Total: -58.93 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -4.37 Total: -60.05 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.76 Total: -1.26 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.80 kcal Atomic # 16 Polarization: 57.95 SS G_CDS: -0.29 Total: 57.66 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.83 kcal Total: -75.06 1.78 -73.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068557007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.393 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds