Wall clock time and date at job start Tue Mar 31 2020 09:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86797 * 119.99504 * 2 1 4 4 H 1.48504 * 109.47312 * 269.99680 * 3 2 1 5 5 H 1.48507 * 109.47519 * 29.99930 * 3 2 1 6 6 H 1.48508 * 109.47390 * 149.99632 * 3 2 1 7 7 C 1.38800 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00074 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.76201 * 100.00023 * 185.65915 * 9 7 2 11 11 C 1.39116 * 120.19004 * 6.87182 * 10 9 7 12 12 C 1.37919 * 120.04788 * 180.29861 * 11 10 9 13 13 C 1.38662 * 120.44355 * 359.67797 * 12 11 10 14 14 C 1.37796 * 120.38548 * 0.02562 * 13 12 11 15 15 C 1.39702 * 119.94045 * 0.02562 * 14 13 12 16 16 C 1.47370 * 120.22204 * 180.02562 * 15 14 13 17 17 O 1.21615 * 120.00225 * 179.97438 * 16 15 14 18 18 N 1.34778 * 119.99576 * 0.27784 * 16 15 14 19 19 C 1.38884 * 119.99839 * 179.72854 * 18 16 15 20 20 N 1.29649 * 124.94679 * 359.68579 * 19 18 16 21 21 C 1.31991 * 116.91478 * 179.81636 * 20 19 18 22 22 C 1.33446 * 114.56857 * 0.47837 * 21 20 19 23 23 S 1.70965 * 124.94748 * 179.97438 * 19 18 16 24 24 H 0.96997 * 120.00172 * 0.02562 * 1 2 3 25 25 H 1.07996 * 119.97385 * 359.97237 * 11 10 9 26 26 H 1.08003 * 119.77622 * 179.69081 * 12 11 10 27 27 H 1.08002 * 119.80716 * 180.02562 * 13 12 11 28 28 H 1.08009 * 120.02959 * 179.97438 * 14 13 12 29 29 H 0.97002 * 120.00373 * 359.72210 * 18 16 15 30 30 H 1.07994 * 122.71947 * 180.22910 * 21 20 19 31 31 H 1.07998 * 125.97050 * 179.72907 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4468 2.6528 0.7000 6 1 3.5470 1.4404 0.7001 7 6 2.0097 -1.2020 0.0005 8 1 1.4698 -2.1373 0.0005 9 16 3.7716 -1.2019 0.0012 10 6 4.0778 -2.9287 -0.1694 11 6 3.0237 -3.8065 -0.4012 12 6 3.2660 -5.1583 -0.5281 13 6 4.5580 -5.6525 -0.4330 14 6 5.6162 -4.7986 -0.2098 15 6 5.3891 -3.4265 -0.0776 16 6 6.5163 -2.5076 0.1606 17 8 6.3141 -1.3138 0.2746 18 7 7.7721 -2.9896 0.2461 19 6 8.8350 -2.1229 0.4650 20 7 8.7304 -0.8373 0.5952 21 6 9.8471 -0.1648 0.8026 22 6 10.9488 -0.9169 0.8400 23 16 10.4730 -2.5954 0.5951 24 1 -0.4850 0.8400 -0.0004 25 1 2.0144 -3.4297 -0.4765 26 1 2.4438 -5.8364 -0.7030 27 1 4.7360 -6.7129 -0.5344 28 1 6.6203 -5.1898 -0.1362 29 1 7.9335 -3.9417 0.1548 30 1 9.8680 0.9076 0.9277 31 1 11.9561 -0.5591 0.9935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072494111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:33 Heat of formation + Delta-G solvation = 59.523330 kcal Electronic energy + Delta-G solvation = -19283.390294 eV Core-core repulsion = 16169.858387 eV Total energy + Delta-G solvation = -3113.531907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 306.024 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43327 -39.02066 -37.58789 -34.81048 -32.76820 -31.07066 -30.47971 -29.25415 -25.96998 -25.51802 -23.41659 -22.16690 -21.57201 -19.55264 -19.13924 -18.00125 -17.03440 -16.35042 -15.95485 -15.44459 -15.24659 -15.04782 -14.69072 -14.13180 -13.89951 -13.87185 -13.33884 -13.25141 -12.72052 -12.24748 -11.96357 -11.62943 -11.39089 -11.21374 -10.97863 -10.79981 -10.58938 -10.19053 -9.76412 -9.51166 -9.37342 -9.34678 -8.90828 -8.56571 -8.29680 -8.25033 -6.88813 -6.53080 -4.25277 0.69705 0.93907 1.34372 1.60332 1.82753 2.80323 2.87080 2.96492 3.19064 3.35998 3.38591 3.42185 4.11662 4.28622 4.48752 4.55954 4.90463 5.07600 5.11838 5.18102 5.44333 5.47678 5.72564 5.88850 5.96240 6.15448 6.30886 6.40664 6.63396 6.82228 6.97654 7.16365 7.36455 7.70043 7.90966 8.28781 8.41506 8.90567 10.53754 Molecular weight = 306.02amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.005013 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.941695 B = 5584.126404 C = 7424.848017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.105 3.895 3 Si 0.848 3.152 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.233 1.233 7 C -0.581 4.581 8 H 0.107 0.893 9 S 0.096 5.904 10 C -0.031 4.031 11 C -0.141 4.141 12 C -0.073 4.073 13 C -0.175 4.175 14 C -0.065 4.065 15 C -0.173 4.173 16 C 0.545 3.455 17 O -0.441 6.441 18 N -0.637 5.637 19 C 0.292 3.708 20 N -0.480 5.480 21 C 0.076 3.924 22 C -0.286 4.286 23 S 0.094 5.906 24 H 0.276 0.724 25 H 0.148 0.852 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.417 0.583 30 H 0.178 0.822 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.689 -8.648 0.304 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.107 4.107 3 Si 0.671 3.329 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.156 1.156 7 C -0.726 4.726 8 H 0.125 0.875 9 S 0.358 5.642 10 C -0.150 4.150 11 C -0.166 4.166 12 C -0.096 4.096 13 C -0.198 4.198 14 C -0.086 4.086 15 C -0.189 4.189 16 C 0.332 3.668 17 O -0.310 6.310 18 N -0.289 5.289 19 C -0.077 4.077 20 N -0.201 5.201 21 C -0.075 4.075 22 C -0.427 4.427 23 S 0.342 5.658 24 H 0.086 0.914 25 H 0.166 0.834 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.256 0.744 30 H 0.194 0.806 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 18.823 -7.066 0.415 20.110 hybrid contribution -0.628 0.002 -0.075 0.632 sum 18.196 -7.064 0.340 19.522 Atomic orbital electron populations 1.69901 1.06160 1.28415 1.44771 1.24799 0.94539 0.99074 0.92254 0.86899 0.82133 0.83317 0.80501 1.18652 1.19248 1.15649 1.23518 0.91691 0.98435 1.59003 0.87511 1.84197 1.05384 0.97131 1.77446 1.22528 0.93770 1.01591 0.97101 1.21590 1.00115 0.92772 1.02104 1.21175 0.96532 0.95136 0.96719 1.20716 0.92808 0.98905 1.07414 1.20877 0.98160 0.91780 0.97735 1.18917 0.91418 0.92924 1.15604 1.18590 0.81413 0.88871 0.77969 1.90890 1.81678 1.15027 1.43415 1.43230 1.04393 1.09551 1.71760 1.23826 0.92072 0.91084 1.00763 1.66628 1.30113 1.03433 1.19958 1.21732 0.85321 1.01605 0.98857 1.26700 1.04424 0.93582 1.17960 1.83820 1.00615 1.10324 1.71039 0.91409 0.83441 0.86409 0.86542 0.87014 0.74412 0.80552 0.80557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.84 13.96 55.49 0.77 -24.07 16 2 C 0.10 2.95 5.50 -17.46 -0.10 2.85 16 3 Si 0.85 20.94 27.74 -169.99 -4.71 16.22 16 4 H -0.26 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.23 -5.81 6.74 56.52 0.38 -5.43 16 7 C -0.58 -16.13 9.54 30.94 0.30 -15.83 16 8 H 0.11 3.04 5.21 -52.49 -0.27 2.76 16 9 S 0.10 2.43 16.53 -107.50 -1.78 0.65 16 10 C -0.03 -0.66 6.15 -38.38 -0.24 -0.90 16 11 C -0.14 -2.85 9.22 -39.37 -0.36 -3.21 16 12 C -0.07 -1.18 10.03 -39.54 -0.40 -1.57 16 13 C -0.17 -2.42 10.02 -39.59 -0.40 -2.82 16 14 C -0.07 -0.93 9.53 -39.20 -0.37 -1.30 16 15 C -0.17 -3.20 5.89 -104.76 -0.62 -3.82 16 16 C 0.54 10.23 7.71 -12.54 -0.10 10.13 16 17 O -0.44 -10.10 12.40 5.26 0.07 -10.04 16 18 N -0.64 -9.09 5.35 -14.08 -0.08 -9.17 16 19 C 0.29 4.25 8.01 -87.44 -0.70 3.55 16 20 N -0.48 -8.16 8.64 -15.15 -0.13 -8.29 16 21 C 0.08 0.98 11.34 -19.16 -0.22 0.76 16 22 C -0.29 -2.87 11.35 29.06 0.33 -2.54 16 23 S 0.09 0.94 23.22 -107.50 -2.50 -1.55 16 24 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.15 3.25 5.04 -52.49 -0.26 2.98 16 26 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.11 1.10 6.40 -52.48 -0.34 0.76 16 29 H 0.42 4.20 6.85 -40.82 -0.28 3.92 16 30 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 297.12 15.07 4.48 4.48 Total: -1.00 -33.45 297.12 -8.75 -42.20 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.00 Total: 4.26 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.87 Total: -14.69 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.57 Total: -41.52 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.22 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -4.27 Total: -0.90 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.45 -8.75 -42.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072494111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.720 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds