Wall clock time and date at job start Tue Mar 31 2020 08:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00409 * 2 1 4 4 C 1.46909 * 110.99799 * 123.95234 * 2 1 3 5 5 C 1.52996 * 109.47135 * 66.04714 * 4 2 1 6 6 C 1.52998 * 109.47077 * 180.02562 * 5 4 2 7 7 N 1.46906 * 109.47020 * 179.97438 * 6 5 4 8 8 C 1.46902 * 110.99573 * 179.97438 * 7 6 5 9 9 C 1.50707 * 109.46656 * 179.97438 * 8 7 6 10 10 C 1.38280 * 119.92897 * 269.72802 * 9 8 7 11 11 C 1.38103 * 120.07444 * 179.72759 * 10 9 8 12 12 C 1.38906 * 119.92389 * 0.54815 * 11 10 9 13 13 N 1.39674 * 120.07564 * 179.75193 * 12 11 10 14 14 C 1.46496 * 120.00521 * 179.97438 * 13 12 11 15 15 C 1.46506 * 119.99758 * 359.97200 * 13 12 11 16 16 C 1.50695 * 109.47155 * 90.00571 * 15 13 12 17 17 H 1.07999 * 119.99981 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00359 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99598 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00282 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46953 * 89.99888 * 20 18 16 22 22 H 1.48501 * 109.46799 * 209.99934 * 20 18 16 23 23 H 1.48500 * 109.46832 * 329.99871 * 20 18 16 24 24 C 1.38905 * 119.85375 * 359.72287 * 12 11 10 25 25 C 1.38108 * 119.92517 * 0.02562 * 24 12 11 26 26 H 1.08998 * 109.47113 * 296.04900 * 1 2 3 27 27 H 1.09003 * 109.46898 * 56.04872 * 1 2 3 28 28 H 1.09001 * 109.47088 * 176.04809 * 1 2 3 29 29 H 1.08993 * 109.47571 * 183.95415 * 3 2 1 30 30 H 1.09005 * 109.46790 * 303.95654 * 3 2 1 31 31 H 1.09001 * 109.46927 * 63.94994 * 3 2 1 32 32 H 1.08993 * 109.46957 * 306.04618 * 4 2 1 33 33 H 1.09000 * 109.46992 * 186.04543 * 4 2 1 34 34 H 1.08995 * 109.47786 * 59.99547 * 5 4 2 35 35 H 1.09008 * 109.46885 * 300.00039 * 5 4 2 36 36 H 1.09002 * 109.47142 * 60.00048 * 6 5 4 37 37 H 1.09000 * 109.46991 * 299.99792 * 6 5 4 38 38 H 1.00896 * 111.00309 * 56.04370 * 7 6 5 39 39 H 1.08990 * 109.47358 * 299.99539 * 8 7 6 40 40 H 1.09004 * 109.47457 * 60.00221 * 8 7 6 41 41 H 1.07998 * 119.95898 * 359.97438 * 10 9 8 42 42 H 1.08003 * 120.03747 * 180.27137 * 11 10 9 43 43 H 1.08996 * 109.47702 * 89.99190 * 14 13 12 44 44 H 1.08997 * 109.47558 * 209.99831 * 14 13 12 45 45 H 1.09006 * 109.46777 * 329.99813 * 14 13 12 46 46 H 1.09004 * 109.46781 * 210.00196 * 15 13 12 47 47 H 1.08997 * 109.47198 * 329.99952 * 15 13 12 48 48 H 0.97003 * 119.99619 * 180.02562 * 19 18 16 49 49 H 1.08006 * 120.04526 * 179.97438 * 24 12 11 50 50 H 1.08001 * 119.96705 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9705 6 6 2.1791 -3.0402 2.1556 7 7 1.8291 -4.4580 1.9954 8 6 2.3405 -5.2565 3.1174 9 6 1.9623 -6.7017 2.9187 10 6 0.7697 -7.1794 3.4304 11 6 0.4176 -8.5019 3.2453 12 6 1.2682 -9.3553 2.5541 13 7 0.9176 -10.6946 2.3695 14 6 1.8155 -11.5931 1.6398 15 6 -0.3483 -11.2010 2.9057 16 6 -1.4330 -11.0367 1.8726 17 1 -1.2027 -10.5985 0.9128 18 6 -2.7198 -11.4448 2.1531 19 7 -3.0004 -11.9779 3.3222 20 14 -4.0645 -11.2405 0.8728 21 1 -4.1288 -12.4573 0.0240 22 1 -5.3695 -11.0419 1.5530 23 1 -3.7641 -10.0599 0.0236 24 6 2.4680 -8.8736 2.0463 25 6 2.8117 -7.5487 2.2305 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8723 0.9233 32 1 1.5610 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1757 34 1 2.0656 -2.6214 0.0453 35 1 0.5470 -2.3474 0.9324 36 1 1.7443 -2.6614 3.0806 37 1 3.2634 -2.9354 2.1941 38 1 2.1655 -4.8161 1.1141 39 1 3.4258 -5.1674 3.1618 40 1 1.9075 -4.8928 4.0493 41 1 0.1112 -6.5165 3.9719 42 1 -0.5160 -8.8733 3.6413 43 1 2.5090 -12.0604 2.3390 44 1 1.2300 -12.3640 1.1389 45 1 2.3759 -11.0234 0.8985 46 1 -0.2409 -12.2567 3.1550 47 1 -0.6129 -10.6410 3.8027 48 1 -3.9056 -12.2654 3.5194 49 1 3.1319 -9.5345 1.5087 50 1 3.7446 -7.1735 1.8363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072659000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:44 Heat of formation + Delta-G solvation = 31.948953 kcal Electronic energy + Delta-G solvation = -24096.717535 eV Core-core repulsion = 20737.535211 eV Total energy + Delta-G solvation = -3359.182323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.04454 -38.16043 -36.63866 -35.22393 -32.77839 -32.02200 -30.41709 -29.46922 -27.90952 -27.78627 -26.49519 -25.02929 -23.79287 -22.30662 -21.95367 -21.51866 -20.99474 -19.52595 -16.73983 -16.46253 -16.30772 -15.85666 -15.48438 -15.24013 -15.00402 -14.68097 -14.33492 -14.23394 -14.01344 -13.70699 -13.52172 -12.94930 -12.85216 -12.72895 -12.53545 -12.36124 -12.14084 -12.04945 -11.87729 -11.77489 -11.50531 -11.39786 -11.35648 -11.23273 -10.91217 -10.79204 -10.67561 -10.60643 -10.23809 -9.88150 -9.73348 -8.83873 -8.70362 -8.49229 -8.35607 -8.23797 -6.45111 -6.00242 -4.15807 2.13672 2.23651 3.27781 3.34622 3.39894 3.58062 4.15351 4.24016 4.43036 4.63189 4.76372 4.81480 4.87339 5.05282 5.10392 5.17609 5.23021 5.27135 5.29648 5.32911 5.35678 5.45993 5.49351 5.55575 5.58851 5.64078 5.67166 5.81234 5.85729 5.98059 6.04480 6.07407 6.10101 6.29230 6.41690 6.46140 6.66036 6.67694 6.69516 6.93873 7.01745 7.10567 7.20191 7.28824 7.38979 7.45788 7.62820 7.82672 8.16991 8.28328 8.50414 8.93251 9.51002 10.97043 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.002474 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.353153 B =11313.891956 C =12726.293538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.056 3.944 5 C -0.115 4.115 6 C 0.060 3.940 7 N -0.685 5.685 8 C 0.116 3.884 9 C -0.173 4.173 10 C -0.051 4.051 11 C -0.188 4.188 12 C 0.241 3.759 13 N -0.615 5.615 14 C 0.098 3.902 15 C 0.248 3.752 16 C -0.530 4.530 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.222 4.222 25 C -0.068 4.068 26 H 0.025 0.975 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.342 0.658 39 H 0.027 0.973 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.112 0.888 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.008 19.607 -2.713 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.072 4.072 5 C -0.154 4.154 6 C -0.070 4.070 7 N -0.316 5.316 8 C -0.012 4.012 9 C -0.176 4.176 10 C -0.070 4.070 11 C -0.211 4.211 12 C 0.134 3.866 13 N -0.321 5.321 14 C -0.046 4.046 15 C 0.129 3.871 16 C -0.569 4.569 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.245 4.245 25 C -0.088 4.088 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.160 0.840 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.130 0.870 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.317 19.133 -2.778 22.402 hybrid contribution -0.223 0.374 -0.204 0.481 sum 11.094 19.507 -2.982 22.639 Atomic orbital electron populations 1.22462 0.87174 1.02878 1.00320 1.61973 1.08290 1.13645 1.43340 1.22380 1.00719 0.88906 1.00426 1.22111 0.99943 0.94011 0.91166 1.21565 1.02352 0.92950 0.98488 1.21896 0.97361 0.89070 0.98667 1.60529 1.64261 1.01238 1.05590 1.20639 0.96138 0.90394 0.93999 1.19175 0.97406 0.94185 1.06847 1.20638 0.94759 0.94427 0.97208 1.20898 1.01480 0.93475 1.05203 1.17959 0.92100 0.84860 0.91653 1.47097 1.21776 1.05686 1.57551 1.21468 0.93624 0.94058 0.95422 1.19290 0.78658 0.94688 0.94492 1.21576 0.93363 1.40784 1.01186 0.92250 1.24968 0.98585 0.94995 0.95584 1.69934 1.20653 1.41441 1.21405 0.86517 0.81068 0.78590 0.81451 1.20664 1.21093 1.19726 1.20515 0.98365 0.96409 1.09220 1.20506 0.97911 0.92979 0.97369 0.95655 0.91517 0.90630 0.91416 0.91385 0.95761 0.94773 0.90961 0.91201 0.90845 0.91359 0.95658 0.84000 0.95486 0.91115 0.87058 0.85072 0.94653 0.91462 0.92709 0.95225 0.94596 0.92673 0.86959 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 60.06 0.56 0.72 16 2 N -0.55 -4.75 5.02 -251.26 -1.26 -6.02 16 3 C 0.02 0.16 9.57 60.06 0.57 0.74 16 4 C 0.06 0.46 4.96 -3.82 -0.02 0.44 16 5 C -0.12 -1.06 5.40 -26.73 -0.14 -1.20 16 6 C 0.06 0.58 5.69 -3.82 -0.02 0.56 16 7 N -0.68 -8.28 6.49 -115.05 -0.75 -9.03 16 8 C 0.12 1.47 5.81 -4.97 -0.03 1.44 16 9 C -0.17 -2.70 5.39 -104.58 -0.56 -3.27 16 10 C -0.05 -0.90 9.69 -39.62 -0.38 -1.28 16 11 C -0.19 -3.87 9.21 -39.38 -0.36 -4.23 16 12 C 0.24 4.94 6.55 -83.79 -0.55 4.39 16 13 N -0.62 -13.29 2.99 -181.01 -0.54 -13.83 16 14 C 0.10 1.74 10.19 59.84 0.61 2.35 16 15 C 0.25 6.27 4.91 -5.19 -0.03 6.25 16 16 C -0.53 -14.57 9.39 -34.44 -0.32 -14.90 16 17 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 20 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 25 C -0.07 -1.06 9.69 -39.61 -0.38 -1.45 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.07 0.64 6.47 -51.93 -0.34 0.30 16 29 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 33 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.75 6.55 -51.92 -0.34 0.41 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.34 4.09 8.72 -39.29 -0.34 3.75 16 39 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 40 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.13 2.97 6.14 -52.48 -0.32 2.65 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 45 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 46 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 48 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.11 1.77 6.14 -52.48 -0.32 1.45 16 50 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -29.24 399.45 -11.35 -40.60 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -9.02 Total: 2.92 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.52 Total: -12.09 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -1.81 Total: -53.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.24 -11.35 -40.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072659000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.547 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds