Wall clock time and date at job start Tue Mar 31 2020 09:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9 13 13 C 1.34991 * 126.03226 * 125.00479 * 12 11 10 14 14 C 1.35348 * 107.73380 * 179.97438 * 13 12 11 15 15 I 2.09508 * 126.04197 * 179.97438 * 14 13 12 16 16 C 1.39896 * 107.91780 * 359.97438 * 14 13 12 17 17 N 1.30848 * 108.20184 * 359.74147 * 16 14 13 18 18 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 21 21 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 22 22 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 23 23 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 24 24 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 25 25 H 1.08003 * 126.13194 * 359.94829 * 13 12 11 26 26 H 1.08000 * 125.90200 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 2.4726 -7.1115 0.8919 14 6 3.4927 -7.9298 0.5430 15 53 4.0667 -9.6792 1.5427 16 6 4.0959 -7.4012 -0.6032 17 7 3.4574 -6.3079 -0.9338 18 1 -0.4851 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8904 20 1 0.6248 -2.5571 0.8896 21 1 2.8721 -3.6042 -0.8905 22 1 2.8721 -3.6043 0.8895 23 1 0.8535 -5.0450 0.8885 24 1 0.8542 -5.0446 -0.8914 25 1 1.8099 -7.2433 1.7344 26 1 4.9397 -7.8249 -1.1275 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079903201.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:20 Heat of formation + Delta-G solvation = 73.577712 kcal Electronic energy + Delta-G solvation = -11380.832394 eV Core-core repulsion = 9127.093186 eV Total energy + Delta-G solvation = -2253.739208 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 305.992 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.20157 -35.17141 -32.98183 -31.50165 -30.85834 -28.01429 -26.25757 -23.65755 -21.13735 -20.73927 -19.93610 -17.03565 -16.13399 -15.30526 -14.51233 -14.31066 -13.99508 -13.05690 -12.84723 -12.46957 -12.07543 -11.64702 -11.03661 -10.92679 -10.69901 -10.62782 -10.37720 -9.92421 -9.82593 -9.67167 -9.41036 -9.19428 -8.44081 -8.42995 -6.08240 -4.11000 1.21251 1.85710 2.62393 2.71608 3.29856 3.34062 3.37147 4.39763 4.65586 4.75511 5.16052 5.28126 5.47772 5.53841 5.68788 5.75338 6.34020 6.49148 6.50264 6.89451 7.03039 7.52401 7.62272 7.67289 7.89474 8.31307 8.94613 9.53669 11.03003 Molecular weight = 305.99amu Principal moments of inertia in cm(-1) A = 0.066362 B = 0.002947 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.823956 B = 9499.173542 C = 9555.217596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.119 4.119 11 C 0.124 3.876 12 N -0.347 5.347 13 C 0.097 3.903 14 C -0.259 4.259 15 I -0.025 7.025 16 C 0.068 3.932 17 N -0.276 5.276 18 H 0.262 0.738 19 H 0.020 0.980 20 H 0.018 0.982 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.177 0.823 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -23.266 4.091 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.005 3.995 12 N -0.126 5.126 13 C -0.056 4.056 14 C -0.412 4.412 15 I 0.120 6.880 16 C -0.120 4.120 17 N -0.098 5.098 18 H 0.072 0.928 19 H 0.038 0.962 20 H 0.036 0.964 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.105 0.895 25 H 0.194 0.806 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.620 -23.190 3.908 24.431 hybrid contribution 0.101 1.313 0.046 1.317 sum 6.720 -21.878 3.955 23.226 Atomic orbital electron populations 1.69936 1.06049 1.26909 1.50525 1.25012 0.94890 0.99349 0.95127 0.86616 0.79569 0.82882 0.78713 1.20154 1.21204 1.20210 1.21130 0.93062 0.90778 1.51083 0.92642 1.19058 0.93740 0.90995 0.97497 1.21968 0.99765 0.91946 1.02080 1.22311 0.89266 0.84159 1.03795 1.49250 1.24737 1.19330 1.19328 1.22472 0.98497 0.88830 0.95802 1.24218 1.06779 1.04343 1.05831 1.96512 1.91523 1.24797 1.75150 1.23726 0.99850 0.93262 0.95204 1.77532 1.01093 1.17877 1.13283 0.92829 0.96185 0.96362 0.91606 0.92749 0.88603 0.89452 0.80582 0.79987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.29 55.43 0.74 -25.57 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 15 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 15 10 C -0.12 -2.38 5.34 -26.73 -0.14 -2.52 15 11 C 0.12 1.96 6.51 -4.05 -0.03 1.93 15 12 N -0.35 -5.32 3.68 -61.35 -0.23 -5.54 15 13 C 0.10 1.24 11.41 -17.19 -0.20 1.05 15 14 C -0.26 -3.25 6.50 -39.99 -0.26 -3.51 15 15 I -0.02 -0.25 40.67 -73.02 -2.97 -3.22 15 16 C 0.07 0.92 12.00 -17.35 -0.21 0.71 15 17 N -0.28 -4.53 12.42 30.63 0.38 -4.15 15 18 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 19 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 20 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 21 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.10 1.29 8.07 -51.93 -0.42 0.87 15 24 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.18 1.75 8.06 -52.48 -0.42 1.33 15 26 H 0.18 1.96 8.06 -52.49 -0.42 1.54 15 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -29.99 263.16 -7.44 -37.42 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -2.92 Total: -4.17 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.38 Total: -15.21 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.89 Total: -35.26 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 53 Polarization: -0.25 SS G_CDS: -2.97 Total: -3.22 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.99 -7.44 -37.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079903201.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.002 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds