Wall clock time and date at job start Tue Mar 31 2020 08:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39868 * 126.03601 * 2 1 4 4 N 1.30840 * 108.19648 * 179.97438 * 3 2 1 5 5 N 1.40075 * 108.20851 * 359.97438 * 4 3 2 6 6 C 1.46504 * 126.04033 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46819 * 305.02588 * 6 5 4 8 8 C 1.53001 * 109.47173 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46847 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46847 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.47302 * 174.86012 * 10 9 8 12 12 C 1.46900 * 110.99880 * 75.74553 * 11 10 9 13 13 C 1.50700 * 109.47238 * 189.99946 * 12 11 10 14 14 H 1.07992 * 119.99960 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99932 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99953 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47328 * 89.99718 * 17 15 13 19 19 H 1.48502 * 109.47390 * 210.00007 * 17 15 13 20 20 H 1.48503 * 109.47037 * 329.99600 * 17 15 13 21 21 C 1.46897 * 111.00156 * 199.70158 * 11 10 9 22 22 C 1.52995 * 109.47203 * 75.54833 * 21 11 10 23 23 C 1.52997 * 117.49957 * 243.46389 * 22 21 11 24 24 C 1.53003 * 60.00155 * 252.51129 * 23 22 21 25 25 C 1.34944 * 107.92681 * 0.02562 * 5 4 3 26 26 H 1.08995 * 109.47635 * 90.03020 * 1 2 3 27 27 H 1.09011 * 109.47368 * 210.02915 * 1 2 3 28 28 H 1.09006 * 109.47286 * 330.02535 * 1 2 3 29 29 H 1.07997 * 125.90380 * 0.21280 * 3 2 1 30 30 H 1.08999 * 109.47196 * 65.01892 * 6 5 4 31 31 H 1.09000 * 109.47430 * 185.02712 * 6 5 4 32 32 H 1.09007 * 109.46963 * 299.99576 * 7 6 5 33 33 H 1.08999 * 109.47482 * 59.99613 * 7 6 5 34 34 H 1.08999 * 109.46980 * 299.99388 * 8 7 6 35 35 H 1.09000 * 109.47292 * 59.99991 * 8 7 6 36 36 H 1.09002 * 109.47534 * 299.99134 * 9 8 7 37 37 H 1.08999 * 109.47559 * 59.99718 * 9 8 7 38 38 H 1.09002 * 109.47343 * 294.86040 * 10 9 8 39 39 H 1.08997 * 109.47310 * 54.86270 * 10 9 8 40 40 H 1.09002 * 109.47157 * 310.00620 * 12 11 10 41 41 H 1.09010 * 109.47221 * 69.99988 * 12 11 10 42 42 H 0.96997 * 119.99690 * 180.02562 * 16 15 13 43 43 H 1.08999 * 109.47146 * 195.55307 * 21 11 10 44 44 H 1.08998 * 109.47031 * 315.54492 * 21 11 10 45 45 H 1.09003 * 115.54839 * 29.17529 * 22 21 11 46 46 H 1.08998 * 117.50208 * 0.02562 * 23 22 21 47 47 H 1.09002 * 117.50100 * 145.02456 * 23 22 21 48 48 H 1.09002 * 117.49442 * 252.51156 * 24 23 22 49 49 H 1.08997 * 117.49659 * 107.49224 * 24 23 22 50 50 H 1.08004 * 126.13025 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1310 0.0000 4 7 3.5753 0.7302 0.0006 5 7 3.5843 -0.6705 0.0015 6 6 4.7745 -1.5248 0.0029 7 6 5.6724 -1.1504 -1.1780 8 6 6.9150 -2.0430 -1.1770 9 6 7.8125 -1.6689 -2.3584 10 6 9.0549 -2.5619 -2.3577 11 7 9.8555 -2.2880 -3.5586 12 6 10.5892 -1.0224 -3.4247 13 6 11.1981 -0.6518 -4.7524 14 1 11.0540 -1.2921 -5.6100 15 6 11.9390 0.5048 -4.8723 16 7 12.1140 1.2848 -3.8280 17 14 12.6931 0.9645 -6.5182 18 1 11.7326 1.7950 -7.2881 19 1 13.9430 1.7341 -6.2925 20 1 13.0035 -0.2703 -7.2827 21 6 10.7716 -3.3999 -3.8454 22 6 9.9856 -4.5659 -4.4480 23 6 9.9416 -5.8733 -3.6544 24 6 10.7817 -5.7805 -4.9298 25 6 2.3031 -1.0941 0.0010 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3634 -0.8898 0.5143 28 1 -0.3634 0.8903 0.5135 29 1 1.9950 2.1578 0.0032 30 1 5.3221 -1.3835 0.9347 31 1 4.4728 -2.5684 -0.0866 32 1 5.1247 -1.2917 -2.1099 33 1 5.9740 -0.1068 -1.0886 34 1 7.4628 -1.9021 -0.2453 35 1 6.6130 -3.0864 -1.2668 36 1 7.2646 -1.8102 -3.2900 37 1 8.1146 -0.6254 -2.2691 38 1 9.6507 -2.3549 -1.4688 39 1 8.7501 -3.6084 -2.3553 40 1 9.9035 -0.2367 -3.1073 41 1 11.3789 -1.1370 -2.6821 42 1 12.6349 2.0987 -3.9124 43 1 11.5325 -3.0704 -4.5529 44 1 11.2507 -3.7235 -2.9214 45 1 9.0959 -4.2903 -5.0143 46 1 10.4723 -5.9025 -2.7028 47 1 9.0228 -6.4581 -3.6984 48 1 10.4154 -6.3042 -5.8129 49 1 11.8653 -5.7488 -4.8175 50 1 1.9723 -2.1223 0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514761.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:15 Heat of formation + Delta-G solvation = 80.930097 kcal Electronic energy + Delta-G solvation = -24167.522683 eV Core-core repulsion = 20810.464341 eV Total energy + Delta-G solvation = -3357.058342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30311 -37.97242 -36.41537 -35.29196 -33.24771 -32.34784 -31.67923 -29.82941 -27.42068 -27.05640 -25.57487 -24.12158 -22.55149 -22.06972 -21.22025 -20.86602 -20.24827 -20.13953 -19.53402 -16.93890 -16.51948 -15.88665 -15.36343 -15.20893 -14.76180 -14.52416 -14.14734 -13.90966 -13.88344 -13.65333 -13.35400 -13.31938 -13.11395 -12.56680 -12.39759 -12.17745 -12.04975 -11.82609 -11.69432 -11.60903 -11.28788 -11.02862 -10.99877 -10.85871 -10.65486 -10.60679 -10.54345 -10.51014 -10.16624 -10.06594 -9.55612 -9.52425 -9.45542 -9.10749 -8.44571 -8.40750 -7.21412 -6.00723 -4.01663 1.78478 2.40498 2.67024 3.33399 3.39360 3.42782 4.13270 4.28273 4.44191 4.62514 4.67939 4.84030 4.91136 5.03968 5.08921 5.13782 5.21225 5.27135 5.28554 5.35133 5.35823 5.46892 5.50300 5.64302 5.65843 5.75955 5.81059 5.83638 5.90949 5.95845 5.98897 5.99828 6.10495 6.15354 6.24155 6.25802 6.33047 6.38449 6.52215 6.55291 6.66500 6.80549 6.85105 6.91239 7.34326 7.38198 7.60791 7.84281 8.14365 8.25811 8.59245 9.06646 9.62460 11.10128 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.002612 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.443300 B =10715.899295 C =12593.054549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.249 4.249 3 C 0.043 3.957 4 N -0.288 5.288 5 N -0.368 5.368 6 C 0.133 3.867 7 C -0.129 4.129 8 C -0.113 4.113 9 C -0.111 4.111 10 C 0.059 3.941 11 N -0.536 5.536 12 C 0.192 3.808 13 C -0.507 4.507 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.091 3.909 22 C -0.130 4.130 23 C -0.192 4.192 24 C -0.185 4.185 25 C 0.050 3.950 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.180 0.820 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.059 0.941 40 H 0.033 0.967 41 H -0.012 1.012 42 H 0.261 0.739 43 H 0.089 0.911 44 H 0.019 0.981 45 H 0.108 0.892 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 -9.745 8.154 22.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.261 4.261 3 C -0.143 4.143 4 N -0.109 5.109 5 N -0.149 5.149 6 C 0.012 3.988 7 C -0.167 4.167 8 C -0.152 4.152 9 C -0.149 4.149 10 C -0.070 4.070 11 N -0.260 5.260 12 C 0.067 3.933 13 C -0.546 4.546 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.037 4.037 22 C -0.149 4.149 23 C -0.229 4.229 24 C -0.222 4.222 25 C -0.096 4.096 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.197 0.803 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.006 0.994 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.037 0.963 45 H 0.126 0.874 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.109 0.891 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.986 -9.260 7.823 20.867 hybrid contribution 0.183 -0.021 -0.141 0.231 sum -16.803 -9.281 7.682 20.676 Atomic orbital electron populations 1.20024 0.89497 1.01905 1.01417 1.20140 0.97041 0.91976 1.16899 1.23807 0.90044 0.99786 1.00665 1.77394 1.21133 0.88945 1.23434 1.48738 1.05478 1.04792 1.55932 1.21872 0.83758 0.92130 1.01046 1.21871 0.95938 1.02013 0.96914 1.21495 0.95150 0.98699 0.99820 1.21508 0.95502 1.00618 0.97229 1.22007 0.94599 0.98303 0.92110 1.62023 1.25800 1.03795 1.34332 1.19751 0.91759 0.85110 0.96630 1.21185 1.30775 1.06752 0.95842 0.91841 1.24990 0.96575 0.96392 0.96678 1.69960 1.40839 1.13688 1.29326 0.86528 0.78559 0.78517 0.83997 1.20643 1.21370 1.19863 1.21568 0.94214 0.89554 0.98402 1.22457 1.01567 0.88706 1.02136 1.23008 1.01795 1.02403 0.95671 1.22898 0.98505 1.03210 0.97630 1.22339 0.84411 0.99953 1.02924 0.92256 0.92376 0.92011 0.80296 0.89757 0.88779 0.91418 0.90220 0.91962 0.92137 0.91463 0.91503 0.96071 0.92246 0.94896 0.99422 0.92965 0.89236 0.96266 0.87432 0.89456 0.89608 0.89338 0.89117 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.37 36.00 0.37 -0.11 16 2 C -0.25 -2.45 6.10 -105.06 -0.64 -3.09 16 3 C 0.04 0.49 11.96 -17.36 -0.21 0.28 16 4 N -0.29 -3.95 12.42 30.62 0.38 -3.57 16 5 N -0.37 -4.25 3.68 -61.36 -0.23 -4.48 16 6 C 0.13 1.27 6.51 -4.04 -0.03 1.24 16 7 C -0.13 -1.50 5.40 -26.73 -0.14 -1.64 16 8 C -0.11 -1.34 5.21 -26.73 -0.14 -1.48 16 9 C -0.11 -1.77 5.25 -26.73 -0.14 -1.91 16 10 C 0.06 1.03 4.81 -3.82 -0.02 1.01 16 11 N -0.54 -11.38 4.36 -236.07 -1.03 -12.41 16 12 C 0.19 5.00 4.55 -4.98 -0.02 4.98 16 13 C -0.51 -14.23 8.23 -34.44 -0.28 -14.52 16 14 H 0.06 1.77 7.31 -52.49 -0.38 1.39 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 17 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.09 1.76 5.07 -3.83 -0.02 1.74 16 22 C -0.13 -2.07 5.15 -90.62 -0.47 -2.54 16 23 C -0.19 -2.52 10.09 -26.73 -0.27 -2.79 16 24 C -0.18 -2.51 10.25 -26.73 -0.27 -2.79 16 25 C 0.05 0.48 11.36 -17.23 -0.20 0.29 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.18 1.52 8.06 -52.49 -0.42 1.09 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.24 6.96 -51.93 -0.36 0.88 16 38 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 39 H 0.06 0.93 7.22 -51.93 -0.37 0.56 16 40 H 0.03 0.91 6.72 -51.93 -0.35 0.57 16 41 H -0.01 -0.34 8.12 -51.92 -0.42 -0.76 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.09 1.95 6.58 -51.93 -0.34 1.60 16 44 H 0.02 0.36 7.73 -51.93 -0.40 -0.04 16 45 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 46 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 405.38 15.07 6.11 6.11 Total: -1.00 -31.91 405.38 -10.98 -42.90 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -9.36 Total: 0.66 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.57 Total: -19.86 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.14 Total: -46.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.91 -10.98 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514761.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.829 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds