Wall clock time and date at job start Tue Mar 31 2020 09:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48501 * 109.46821 * 239.99797 * 3 2 1 5 5 H 1.48491 * 109.47369 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46851 * 120.00190 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.39040 * 120.00065 * 64.99681 * 12 9 7 14 14 N 1.32408 * 119.71201 * 0.02562 * 13 12 9 15 15 C 1.31952 * 121.63075 * 179.97438 * 14 13 12 16 16 C 1.38054 * 120.87941 * 359.97438 * 15 14 13 17 17 C 1.38849 * 119.33058 * 359.97438 * 16 15 14 18 18 C 1.38407 * 118.49491 * 359.73260 * 17 16 15 19 19 Br 1.89096 * 120.45581 * 180.26014 * 18 17 16 20 20 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 21 21 H 0.97002 * 119.99610 * 244.99753 * 12 9 7 22 22 H 1.08008 * 119.56149 * 179.97438 * 15 14 13 23 23 H 1.07993 * 120.33437 * 180.02562 * 16 15 14 24 24 H 1.08003 * 120.74596 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 3.0941 -4.1001 1.0907 14 7 2.9949 -3.2820 2.1272 15 6 3.7776 -3.4040 3.1825 16 6 4.7346 -4.3971 3.2438 17 6 4.8710 -5.2770 2.1783 18 6 4.0320 -5.1283 1.0877 19 35 4.1646 -6.3003 -0.3904 20 1 -0.4849 0.8400 -0.0004 21 1 2.3171 -4.5326 -0.7619 22 1 3.6680 -2.7178 4.0093 23 1 5.3703 -4.4892 4.1120 24 1 5.6119 -6.0625 2.2023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083891813.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:19 Heat of formation + Delta-G solvation = -47.336243 kcal Electronic energy + Delta-G solvation = -15511.419192 eV Core-core repulsion = 12597.807006 eV Total energy + Delta-G solvation = -2913.612187 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 305.946 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11277 -35.31958 -34.94906 -34.01144 -33.05160 -32.97897 -30.52013 -28.70953 -26.11910 -23.47374 -22.76924 -19.11966 -18.15241 -17.70893 -16.38403 -15.82346 -15.44724 -14.81523 -14.56679 -14.29706 -13.84444 -13.52917 -13.06377 -12.11403 -12.03347 -11.35737 -11.22963 -11.17635 -11.09745 -10.84761 -10.59790 -10.36074 -10.29740 -10.18208 -9.43642 -9.21399 -9.15961 -8.82781 -8.07444 -6.68022 -5.26722 1.11124 1.42014 1.62922 2.07525 3.11308 3.14499 3.20308 3.86122 3.91965 4.14714 4.65485 4.72193 4.92931 5.04980 5.21016 5.51235 5.70789 5.79685 6.08148 6.22700 6.48448 6.72400 7.33582 7.36203 7.98188 8.20353 8.91088 10.27326 Molecular weight = 305.95amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.006475 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.994487 B = 4323.046624 C = 4839.332277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.134 3.866 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.993 4.993 8 H 0.100 0.900 9 S 2.696 3.304 10 O -0.971 6.971 11 O -0.996 6.996 12 N -1.041 6.041 13 C 0.437 3.563 14 N -0.485 5.485 15 C 0.167 3.833 16 C -0.222 4.222 17 C -0.016 4.016 18 C -0.199 4.199 19 Br -0.045 7.045 20 H 0.291 0.709 21 H 0.421 0.579 22 H 0.167 0.833 23 H 0.141 0.859 24 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -10.550 3.598 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.083 4.083 3 Si 0.748 3.252 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.128 5.128 8 H 0.119 0.881 9 S 2.797 3.203 10 O -0.961 6.961 11 O -0.986 6.986 12 N -0.780 5.780 13 C 0.200 3.800 14 N -0.200 5.200 15 C 0.007 3.993 16 C -0.245 4.245 17 C -0.043 4.043 18 C -0.286 4.286 19 Br 0.039 6.961 20 H 0.102 0.898 21 H 0.257 0.743 22 H 0.184 0.816 23 H 0.159 0.841 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.164 -10.267 3.041 14.764 hybrid contribution 1.620 0.485 -0.042 1.692 sum 11.784 -9.782 2.999 15.606 Atomic orbital electron populations 1.69885 1.06725 1.30822 1.40372 1.24708 0.94473 1.00655 0.88509 0.86156 0.79814 0.79541 0.79736 1.18975 1.20136 1.18815 1.30130 1.05668 1.10533 1.66447 0.88146 1.01282 0.72153 0.73659 0.73196 1.93395 1.71566 1.86488 1.44618 1.93415 1.72016 1.87311 1.45879 1.54720 1.50572 1.49926 1.22792 1.17793 0.86748 0.88265 0.87242 1.67634 1.26322 1.25599 1.00415 1.22745 0.88094 0.94446 0.94023 1.21953 1.03252 0.98798 1.00465 1.21286 0.95175 0.97266 0.90609 1.22320 1.06194 1.01977 0.98110 1.96623 1.97957 1.61057 1.40502 0.89835 0.74319 0.81553 0.84116 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.03 13.19 55.43 0.73 -24.30 14 2 C 0.13 3.77 5.46 -17.81 -0.10 3.67 14 3 Si 0.92 20.83 29.54 -169.99 -5.02 15.81 14 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 14 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 14 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 14 7 C -0.99 -27.76 9.33 30.60 0.29 -27.47 14 8 H 0.10 2.62 7.81 -52.49 -0.41 2.21 14 9 S 2.70 73.53 4.66 -107.50 -0.50 73.03 14 10 O -0.97 -28.85 16.89 -57.17 -0.97 -29.81 14 11 O -1.00 -29.36 18.02 -57.17 -1.03 -30.39 14 12 N -1.04 -22.39 5.80 31.14 0.18 -22.21 14 13 C 0.44 8.62 7.33 -154.96 -1.14 7.49 14 14 N -0.48 -9.96 8.33 -12.41 -0.10 -10.06 14 15 C 0.17 2.52 11.17 -17.57 -0.20 2.32 14 16 C -0.22 -2.60 10.10 -39.42 -0.40 -3.00 14 17 C -0.02 -0.19 9.93 -39.29 -0.39 -0.58 14 18 C -0.20 -3.12 6.27 -39.17 -0.25 -3.36 14 19 Br -0.05 -0.61 32.15 -68.01 -2.19 -2.80 14 20 H 0.29 7.74 8.31 -40.82 -0.34 7.40 14 21 H 0.42 7.91 7.21 -34.47 -0.25 7.66 14 22 H 0.17 2.00 8.06 -52.48 -0.42 1.58 14 23 H 0.14 1.10 8.06 -52.49 -0.42 0.68 14 24 H 0.14 1.28 8.06 -52.48 -0.42 0.86 14 LS Contribution 256.99 15.07 3.87 3.87 Total: -1.00 -35.41 256.99 -8.26 -43.67 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -1.06 Total: 4.13 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -2.18 Total: -20.94 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.81 Total: -56.57 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -2.00 Total: -60.20 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 73.53 SS G_CDS: -0.50 Total: 73.03 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.19 Total: -2.80 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -35.41 -8.26 -43.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083891813.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.666 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds