Wall clock time and date at job start Tue Mar 31 2020 09:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00350 * 2 1 4 4 H 1.48502 * 109.46874 * 269.99980 * 3 2 1 5 5 H 1.48506 * 109.47096 * 29.99734 * 3 2 1 6 6 H 1.48491 * 109.47346 * 149.99824 * 3 2 1 7 7 C 1.37878 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00468 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46952 * 180.02562 * 9 7 2 11 11 C 1.53010 * 109.47194 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47251 * 179.97438 * 11 10 9 13 13 O 1.42106 * 109.47038 * 289.05398 * 12 11 10 14 14 C 1.76201 * 102.99972 * 180.02562 * 12 11 10 15 15 C 1.38220 * 120.00211 * 94.99520 * 14 12 11 16 16 C 1.38333 * 119.99985 * 179.97438 * 15 14 12 17 17 Cl 1.73597 * 119.99724 * 180.02562 * 16 15 14 18 18 C 1.38375 * 119.99840 * 359.97438 * 16 15 14 19 19 C 1.38176 * 120.00275 * 359.97438 * 18 16 15 20 20 C 1.38339 * 119.99805 * 275.20919 * 14 12 11 21 21 Cl 1.73599 * 120.00014 * 0.02562 * 20 14 12 22 22 H 0.97005 * 120.00512 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47289 * 59.99626 * 9 7 2 24 24 H 1.08999 * 109.47186 * 299.99923 * 9 7 2 25 25 H 1.09002 * 109.47513 * 60.00098 * 10 9 7 26 26 H 1.09004 * 109.47554 * 299.99472 * 10 9 7 27 27 H 1.09002 * 109.46753 * 59.99702 * 11 10 9 28 28 H 1.08999 * 109.47121 * 299.99845 * 11 10 9 29 29 H 1.08002 * 119.99616 * 359.97438 * 15 14 12 30 30 H 1.07999 * 119.99707 * 180.02562 * 18 16 15 31 31 H 1.08002 * 119.99736 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4801 -4.9872 0.0046 12 16 2.6589 -6.3659 0.0050 13 8 3.2982 -6.4430 -1.2617 14 6 1.6115 -7.7829 0.0064 15 6 1.2840 -8.4014 -1.1855 16 6 0.4621 -9.5141 -1.1843 17 17 0.0514 -10.2913 -2.6813 18 6 -0.0317 -10.0082 0.0101 19 6 0.2965 -9.3905 1.2018 20 6 1.1133 -8.2736 1.2000 21 17 1.5196 -7.4930 2.6965 22 1 -0.4851 0.8400 0.0004 23 1 0.6239 -2.5575 -0.8879 24 1 0.6246 -2.5563 0.8920 25 1 2.8718 -3.6036 0.8927 26 1 2.8718 -3.6052 -0.8873 27 1 0.8531 -5.0459 -0.8851 28 1 0.8538 -5.0439 0.8948 29 1 1.6698 -8.0159 -2.1177 30 1 -0.6730 -10.8772 0.0111 31 1 -0.0886 -9.7765 2.1340 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084259612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:35 Heat of formation + Delta-G solvation = -43.732828 kcal Electronic energy + Delta-G solvation = -17461.874072 eV Core-core repulsion = 14307.095335 eV Total energy + Delta-G solvation = -3154.778737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 305.999 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.65250 -37.15375 -36.56324 -35.64878 -34.46087 -32.04318 -31.69411 -30.82434 -27.53241 -23.87996 -23.28992 -23.08921 -20.38482 -18.58021 -17.25758 -16.38901 -16.35587 -16.09453 -15.11162 -14.78203 -14.63843 -14.42560 -14.35264 -13.94375 -12.84729 -12.76900 -12.64789 -12.39849 -12.18150 -12.00241 -11.52626 -11.37009 -11.35822 -11.29887 -10.88703 -10.81485 -10.71289 -10.28746 -9.82407 -9.76521 -9.38787 -9.11455 -9.01212 -8.36410 -8.20767 -6.01086 -4.03942 0.32443 0.64917 1.54260 1.67069 1.88868 2.64801 3.07556 3.32292 3.38421 3.41749 3.84970 4.31613 4.45556 4.50298 4.80251 4.90130 5.28112 5.34596 5.40927 5.48152 5.55268 5.60027 5.66056 6.09403 6.15101 6.46771 6.65659 7.01017 7.64905 7.76952 7.97985 8.39193 9.02909 9.60360 11.10125 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.003333 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.090629 B = 8399.789782 C = 8993.650467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.093 4.093 11 C -0.433 4.433 12 S 1.314 4.686 13 O -0.847 6.847 14 C -0.438 4.438 15 C -0.033 4.033 16 C -0.047 4.047 17 Cl -0.061 7.061 18 C -0.072 4.072 19 C -0.113 4.113 20 C 0.035 3.965 21 Cl -0.042 7.042 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.020 0.980 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -22.919 5.322 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.572 4.572 12 S 1.512 4.488 13 O -0.843 6.843 14 C -0.533 4.533 15 C -0.053 4.053 16 C -0.075 4.075 17 Cl -0.032 7.032 18 C -0.091 4.091 19 C -0.132 4.132 20 C 0.007 3.993 21 Cl -0.012 7.012 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.469 -22.837 5.301 23.490 hybrid contribution -1.260 0.748 -1.819 2.336 sum 0.210 -22.089 3.481 22.362 Atomic orbital electron populations 1.69962 1.06092 1.26646 1.50785 1.25023 0.94851 0.99297 0.95255 0.86586 0.79877 0.83372 0.78139 1.20690 1.21212 1.19739 1.21265 0.93152 0.90980 1.50733 0.92486 1.19087 0.93767 0.90748 0.97477 1.21344 0.99069 0.91687 1.01123 1.27738 1.11668 1.10105 1.07687 1.70018 0.87060 0.82632 1.09055 1.93076 1.63360 1.83149 1.44704 1.28041 1.13358 1.17420 0.94447 1.21063 0.93084 0.92532 0.98601 1.21128 1.01449 0.96920 0.88037 1.98389 1.92543 1.80038 1.32275 1.21164 0.98189 0.99578 0.90127 1.21123 0.98263 0.94876 0.98957 1.20566 0.97207 0.94585 0.86990 1.98425 1.92219 1.79613 1.30972 0.92981 0.96656 0.96155 0.91916 0.92750 0.89563 0.86709 0.83350 0.83708 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.92 13.28 55.43 0.74 -26.18 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 10 C -0.09 -1.87 5.16 -26.73 -0.14 -2.01 16 11 C -0.43 -7.07 5.88 37.16 0.22 -6.85 16 12 S 1.31 17.99 12.45 -107.50 -1.34 16.65 16 13 O -0.85 -15.90 16.78 -35.23 -0.59 -16.49 16 14 C -0.44 -5.44 5.63 -39.55 -0.22 -5.66 16 15 C -0.03 -0.43 9.23 -39.55 -0.37 -0.80 16 16 C -0.05 -0.53 6.32 -39.50 -0.25 -0.77 16 17 Cl -0.06 -0.65 28.96 -51.86 -1.50 -2.15 16 18 C -0.07 -0.62 9.83 -39.55 -0.39 -1.01 16 19 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 20 C 0.03 0.35 6.32 -39.49 -0.25 0.10 16 21 Cl -0.04 -0.37 27.80 -51.86 -1.44 -1.81 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 28 H 0.11 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.15 2.15 7.34 -52.49 -0.39 1.76 16 30 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -34.06 316.23 -10.03 -44.10 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -3.31 Total: -4.17 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -2.33 Total: -31.31 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.59 Total: -16.49 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 17.99 SS G_CDS: -1.34 Total: 16.65 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.94 Total: -3.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.06 -10.03 -44.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084259612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.363 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds