Wall clock time and date at job start Tue Mar 31 2020 08:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.52269 * 2 1 4 4 C 1.53116 * 109.52190 * 239.87839 * 2 1 3 5 5 C 1.53167 * 109.20740 * 182.44100 * 4 2 1 6 6 N 1.46845 * 109.55961 * 59.13760 * 5 4 2 7 7 C 1.46897 * 111.00269 * 174.15761 * 6 5 4 8 8 C 1.52996 * 109.47569 * 301.73074 * 7 6 5 9 9 C 1.53001 * 109.46939 * 326.81424 * 8 7 6 10 10 C 1.52993 * 109.47164 * 86.81322 * 8 7 6 11 11 C 1.52995 * 109.47148 * 206.81804 * 8 7 6 12 12 C 1.50710 * 109.47226 * 179.97438 * 11 8 7 13 13 H 1.07995 * 119.99311 * 359.97438 * 12 11 8 14 14 C 1.37872 * 120.00035 * 179.97438 * 12 11 8 15 15 N 1.31514 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99839 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47454 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47403 * 120.00035 * 16 14 12 19 19 H 1.48498 * 109.47169 * 239.99892 * 16 14 12 20 20 C 1.46846 * 111.19548 * 298.25894 * 6 5 4 21 21 C 1.53036 * 109.52384 * 61.74368 * 20 6 5 22 22 H 1.09000 * 109.53552 * 180.86430 * 21 20 6 23 23 N 1.46499 * 109.50723 * 60.75731 * 21 20 6 24 24 C 1.36878 * 126.39878 * 311.44755 * 23 21 20 25 25 C 1.34668 * 106.82004 * 179.83625 * 24 23 21 26 26 N 1.34125 * 108.01841 * 0.42800 * 25 24 23 27 27 C 1.30499 * 109.25791 * 359.72357 * 26 25 24 28 28 H 1.08999 * 109.47168 * 299.99952 * 1 2 3 29 29 H 1.09009 * 109.47314 * 59.99508 * 1 2 3 30 30 H 1.08995 * 109.47661 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.50156 * 302.31823 * 4 2 1 32 32 H 1.09000 * 109.50685 * 62.43356 * 4 2 1 33 33 H 1.08998 * 109.44804 * 299.10811 * 5 4 2 34 34 H 1.09005 * 109.44804 * 179.16621 * 5 4 2 35 35 H 1.09007 * 109.47061 * 61.73224 * 7 6 5 36 36 H 1.09007 * 109.47386 * 181.72516 * 7 6 5 37 37 H 1.09005 * 109.47188 * 59.99870 * 9 8 7 38 38 H 1.09001 * 109.47397 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.46962 * 300.00508 * 9 8 7 40 40 H 1.09003 * 109.47677 * 74.45179 * 10 8 7 41 41 H 1.09006 * 109.47097 * 194.44914 * 10 8 7 42 42 H 1.08996 * 109.47527 * 314.44955 * 10 8 7 43 43 H 1.09000 * 109.46879 * 299.99394 * 11 8 7 44 44 H 1.08994 * 109.47646 * 59.99736 * 11 8 7 45 45 H 0.97006 * 119.99833 * 179.97438 * 15 14 12 46 46 H 1.08997 * 109.46144 * 301.72319 * 20 6 5 47 47 H 1.09010 * 109.46162 * 181.75298 * 20 6 5 48 48 H 1.08009 * 126.59021 * 359.97438 * 24 23 21 49 49 H 1.07996 * 125.99335 * 180.18821 * 25 24 23 50 50 H 1.07997 * 125.65469 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7242 -1.2483 5 6 3.5721 -0.7735 -1.2105 6 7 4.0115 -1.4767 0.0015 7 6 5.4684 -1.6644 0.0022 8 6 5.8818 -2.4531 -1.2419 9 6 4.7777 -3.4480 -1.6051 10 6 6.1020 -1.4875 -2.4080 11 6 7.1790 -3.2125 -0.9566 12 6 7.5858 -3.9900 -2.1819 13 1 6.9795 -3.9469 -3.0745 14 6 8.7320 -4.7561 -2.1631 15 7 9.4705 -4.8080 -1.0762 16 14 9.2358 -5.7202 -3.6816 17 1 8.2432 -5.4952 -4.7629 18 1 10.5746 -5.2650 -4.1354 19 1 9.2901 -7.1675 -3.3536 20 6 3.5708 -0.7732 1.2128 21 6 2.0416 -0.7245 1.2482 22 1 1.7146 -0.1889 2.1394 23 7 1.5092 -2.0890 1.2744 24 6 1.8738 -3.1191 0.4501 25 6 1.1450 -4.1899 0.8188 26 7 0.3501 -3.8210 1.8342 27 6 0.5628 -2.5639 2.1126 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6455 -1.7396 -1.2679 32 1 1.7152 -0.1883 -2.1395 33 1 3.9678 0.2421 -1.2047 34 1 3.9400 -1.3015 -2.0903 35 1 5.9601 -0.6915 -0.0043 36 1 5.7635 -2.2144 0.8959 37 1 3.8535 -2.9070 -1.8083 38 1 5.0723 -4.0103 -2.4912 39 1 4.6208 -4.1359 -0.7742 40 1 7.0410 -0.9527 -2.2647 41 1 6.1424 -2.0486 -3.3417 42 1 5.2797 -0.7733 -2.4487 43 1 7.9656 -2.5037 -0.6978 44 1 7.0221 -3.9004 -0.1258 45 1 10.2767 -5.3473 -1.0629 46 1 3.9666 0.2424 1.2072 47 1 3.9378 -1.3010 2.0931 48 1 2.6069 -3.0812 -0.3421 49 1 1.1897 -5.1723 0.3724 50 1 0.0643 -1.9971 2.8849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091961221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:34 Heat of formation + Delta-G solvation = 74.082885 kcal Electronic energy + Delta-G solvation = -27313.449804 eV Core-core repulsion = 23956.094545 eV Total energy + Delta-G solvation = -3357.355259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.11913 -39.59346 -37.05068 -34.03016 -32.82276 -32.14019 -30.25323 -28.96901 -28.45765 -27.02903 -26.45281 -25.34680 -23.57180 -22.73910 -21.78041 -21.26772 -20.64731 -19.92406 -18.03823 -16.62911 -16.22752 -16.12721 -15.49511 -15.02627 -14.69841 -14.43719 -14.22548 -13.99427 -13.72450 -13.47008 -13.28626 -13.09344 -12.93919 -12.81568 -12.64619 -12.22692 -12.00131 -11.93943 -11.86920 -11.60582 -11.04685 -11.02609 -10.89958 -10.83537 -10.73588 -10.56774 -10.47116 -10.22485 -9.90162 -9.77765 -9.66091 -9.34087 -8.96319 -8.85152 -8.33473 -8.21885 -8.08726 -5.97811 -3.98076 2.39307 2.95384 3.31560 3.39828 3.42519 3.46776 3.93157 4.26451 4.40415 4.47993 4.57272 4.80914 4.87976 5.02363 5.14560 5.20828 5.24033 5.36906 5.38427 5.41343 5.46194 5.54360 5.61416 5.67183 5.68867 5.79620 5.83666 5.92417 5.94746 5.99428 6.07184 6.18599 6.21388 6.28233 6.32103 6.50459 6.60193 6.70434 6.79781 7.07555 7.10018 7.11176 7.16354 7.27332 7.31975 7.48599 7.67131 7.82596 8.01847 8.35304 8.45677 9.07458 9.65256 11.13827 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.003898 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.500083 B = 7181.571925 C = 7687.713377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.125 4.125 5 C 0.029 3.971 6 N -0.527 5.527 7 C 0.066 3.934 8 C -0.057 4.057 9 C -0.122 4.122 10 C -0.143 4.143 11 C 0.036 3.964 12 C -0.506 4.506 13 H 0.059 0.941 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.886 3.114 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 C 0.043 3.957 21 C 0.144 3.856 22 H 0.099 0.901 23 N -0.440 5.440 24 C -0.013 4.013 25 C -0.062 4.062 26 N -0.497 5.497 27 C 0.155 3.845 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.113 0.887 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.012 0.988 44 H 0.016 0.984 45 H 0.258 0.742 46 H 0.049 0.951 47 H 0.082 0.918 48 H 0.199 0.801 49 H 0.162 0.838 50 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.382 12.562 3.108 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.163 4.163 5 C -0.098 4.098 6 N -0.251 5.251 7 C -0.061 4.061 8 C -0.058 4.058 9 C -0.179 4.179 10 C -0.199 4.199 11 C -0.001 4.001 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.086 4.086 21 C 0.040 3.960 22 H 0.117 0.883 23 N -0.123 5.123 24 C -0.146 4.146 25 C -0.209 4.209 26 N -0.216 5.216 27 C -0.126 4.126 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.130 0.870 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.216 0.784 49 H 0.179 0.821 50 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.942 11.651 3.589 20.873 hybrid contribution 1.513 0.811 -0.992 1.983 sum -15.429 12.463 2.597 20.003 Atomic orbital electron populations 1.21813 0.94456 1.02477 1.01671 1.21527 0.96415 0.99355 0.94807 0.89923 1.21938 0.95670 1.02039 0.96645 1.22841 0.94515 0.97003 0.95428 1.62153 1.14575 1.47681 1.00709 1.22351 0.84322 0.98640 1.00759 1.20625 0.98337 0.94862 0.91945 1.21845 0.96334 0.98283 1.01413 1.22191 0.99887 0.98456 0.99409 1.19149 0.89611 0.94344 0.97006 1.21250 1.07586 1.26950 0.98664 0.92327 1.25004 0.96753 0.96968 0.95803 1.69973 1.15515 1.40917 1.27287 0.86624 0.78380 0.79984 0.83537 1.19788 1.21241 1.21129 1.22361 0.92778 0.98067 0.95346 1.21531 0.94225 0.80761 0.99466 0.88299 1.45395 1.30482 1.09787 1.26675 1.23582 1.03737 0.87122 1.00186 1.22291 0.99748 0.99611 0.99248 1.70187 1.24870 1.10571 1.15954 1.24745 0.95869 0.92378 0.99641 0.92790 0.92361 0.92146 0.90014 0.91331 0.95089 0.86974 0.95417 0.90842 0.93702 0.92678 0.93369 0.93463 0.92349 0.93841 0.96995 0.96573 0.93214 0.93246 0.89965 0.78441 0.82081 0.79118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.99 37.16 0.33 -0.82 16 2 C -0.10 -0.84 2.61 -90.50 -0.24 -1.08 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -1.21 4.91 -26.58 -0.13 -1.34 16 5 C 0.03 0.33 2.95 -3.77 -0.01 0.32 16 6 N -0.53 -6.54 1.39 -234.58 -0.33 -6.87 16 7 C 0.07 1.03 4.59 -3.83 -0.02 1.01 16 8 C -0.06 -1.05 0.52 -154.52 -0.08 -1.13 16 9 C -0.12 -2.13 6.69 37.16 0.25 -1.88 16 10 C -0.14 -2.44 7.42 37.15 0.28 -2.16 16 11 C 0.04 0.88 3.85 -27.88 -0.11 0.77 16 12 C -0.51 -13.45 7.78 -34.44 -0.27 -13.72 16 13 H 0.06 1.52 5.78 -52.49 -0.30 1.21 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 16 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 C 0.04 0.46 5.00 -3.83 -0.02 0.44 16 21 C 0.14 1.30 2.89 -67.85 -0.20 1.10 16 22 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16 23 N -0.44 -5.01 1.85 -111.37 -0.21 -5.22 16 24 C -0.01 -0.17 8.13 -16.56 -0.13 -0.31 16 25 C -0.06 -0.92 11.87 -17.81 -0.21 -1.14 16 26 N -0.50 -7.55 11.25 -14.67 -0.17 -7.71 16 27 C 0.16 1.88 12.10 -90.37 -1.09 0.78 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.60 7.21 -51.93 -0.37 0.22 16 31 H 0.08 0.92 5.28 -51.93 -0.27 0.65 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.34 7.98 -51.93 -0.41 -0.07 16 34 H 0.11 1.42 3.33 -51.93 -0.17 1.24 16 35 H 0.03 0.42 7.88 -51.93 -0.41 0.01 16 36 H 0.07 1.25 7.84 -51.92 -0.41 0.84 16 37 H 0.04 0.66 3.79 -51.93 -0.20 0.46 16 38 H 0.05 1.06 6.62 -51.93 -0.34 0.72 16 39 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 41 H 0.06 1.06 7.08 -51.93 -0.37 0.70 16 42 H 0.04 0.61 4.52 -51.93 -0.23 0.38 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.02 0.43 8.11 -51.93 -0.42 0.00 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.94 8.11 -51.92 -0.42 0.52 16 48 H 0.20 2.74 3.12 -52.48 -0.16 2.58 16 49 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 50 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -30.10 358.57 -9.61 -39.71 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.28 Total: 1.85 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -1.75 Total: -17.71 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.04 Total: -45.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.10 -9.61 -39.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091961221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.789 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds