Wall clock time and date at job start Tue Mar 31 2020 08:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.52269 * 2 1 4 4 C 1.53116 * 109.52190 * 239.87839 * 2 1 3 5 5 C 1.53167 * 109.20740 * 182.44100 * 4 2 1 6 6 N 1.46845 * 109.55961 * 59.13760 * 5 4 2 7 7 C 1.46897 * 111.00269 * 174.15761 * 6 5 4 8 8 C 1.52996 * 109.47569 * 301.73074 * 7 6 5 9 9 C 1.53001 * 109.46939 * 326.81424 * 8 7 6 10 10 C 1.52993 * 109.47164 * 86.81322 * 8 7 6 11 11 C 1.52995 * 109.47148 * 206.81804 * 8 7 6 12 12 C 1.50710 * 109.47226 * 179.97438 * 11 8 7 13 13 H 1.07995 * 119.99311 * 359.97438 * 12 11 8 14 14 C 1.37872 * 120.00035 * 179.97438 * 12 11 8 15 15 N 1.31514 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99839 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47454 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47403 * 120.00035 * 16 14 12 19 19 H 1.48498 * 109.47169 * 239.99892 * 16 14 12 20 20 C 1.46846 * 111.19548 * 298.25894 * 6 5 4 21 21 C 1.53036 * 109.52384 * 61.74368 * 20 6 5 22 22 H 1.09000 * 109.53552 * 180.86430 * 21 20 6 23 23 N 1.46499 * 109.50723 * 60.75731 * 21 20 6 24 24 C 1.36878 * 126.39878 * 311.44755 * 23 21 20 25 25 C 1.34668 * 106.82004 * 179.83625 * 24 23 21 26 26 N 1.34125 * 108.01841 * 0.42800 * 25 24 23 27 27 C 1.30499 * 109.25791 * 359.72357 * 26 25 24 28 28 H 1.08999 * 109.47168 * 299.99952 * 1 2 3 29 29 H 1.09009 * 109.47314 * 59.99508 * 1 2 3 30 30 H 1.08995 * 109.47661 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.50156 * 302.31823 * 4 2 1 32 32 H 1.09000 * 109.50685 * 62.43356 * 4 2 1 33 33 H 1.08998 * 109.44804 * 299.10811 * 5 4 2 34 34 H 1.09005 * 109.44804 * 179.16621 * 5 4 2 35 35 H 1.09007 * 109.47061 * 61.73224 * 7 6 5 36 36 H 1.09007 * 109.47386 * 181.72516 * 7 6 5 37 37 H 1.09005 * 109.47188 * 59.99870 * 9 8 7 38 38 H 1.09001 * 109.47397 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.46962 * 300.00508 * 9 8 7 40 40 H 1.09003 * 109.47677 * 74.45179 * 10 8 7 41 41 H 1.09006 * 109.47097 * 194.44914 * 10 8 7 42 42 H 1.08996 * 109.47527 * 314.44955 * 10 8 7 43 43 H 1.09000 * 109.46879 * 299.99394 * 11 8 7 44 44 H 1.08994 * 109.47646 * 59.99736 * 11 8 7 45 45 H 0.97006 * 119.99833 * 179.97438 * 15 14 12 46 46 H 1.08997 * 109.46144 * 301.72319 * 20 6 5 47 47 H 1.09010 * 109.46162 * 181.75298 * 20 6 5 48 48 H 1.08009 * 126.59021 * 359.97438 * 24 23 21 49 49 H 1.07996 * 125.99335 * 180.18821 * 25 24 23 50 50 H 1.07997 * 125.65469 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7242 -1.2483 5 6 3.5721 -0.7735 -1.2105 6 7 4.0115 -1.4767 0.0015 7 6 5.4684 -1.6644 0.0022 8 6 5.8818 -2.4531 -1.2419 9 6 4.7777 -3.4480 -1.6051 10 6 6.1020 -1.4875 -2.4080 11 6 7.1790 -3.2125 -0.9566 12 6 7.5858 -3.9900 -2.1819 13 1 6.9795 -3.9469 -3.0745 14 6 8.7320 -4.7561 -2.1631 15 7 9.4705 -4.8080 -1.0762 16 14 9.2358 -5.7202 -3.6816 17 1 8.2432 -5.4952 -4.7629 18 1 10.5746 -5.2650 -4.1354 19 1 9.2901 -7.1675 -3.3536 20 6 3.5708 -0.7732 1.2128 21 6 2.0416 -0.7245 1.2482 22 1 1.7146 -0.1889 2.1394 23 7 1.5092 -2.0890 1.2744 24 6 1.8738 -3.1191 0.4501 25 6 1.1450 -4.1899 0.8188 26 7 0.3501 -3.8210 1.8342 27 6 0.5628 -2.5639 2.1126 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6455 -1.7396 -1.2679 32 1 1.7152 -0.1883 -2.1395 33 1 3.9678 0.2421 -1.2047 34 1 3.9400 -1.3015 -2.0903 35 1 5.9601 -0.6915 -0.0043 36 1 5.7635 -2.2144 0.8959 37 1 3.8535 -2.9070 -1.8083 38 1 5.0723 -4.0103 -2.4912 39 1 4.6208 -4.1359 -0.7742 40 1 7.0410 -0.9527 -2.2647 41 1 6.1424 -2.0486 -3.3417 42 1 5.2797 -0.7733 -2.4487 43 1 7.9656 -2.5037 -0.6978 44 1 7.0221 -3.9004 -0.1258 45 1 10.2767 -5.3473 -1.0629 46 1 3.9666 0.2424 1.2072 47 1 3.9378 -1.3010 2.0931 48 1 2.6069 -3.0812 -0.3421 49 1 1.1897 -5.1723 0.3724 50 1 0.0643 -1.9971 2.8849 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091961221.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:33 Heat of formation + Delta-G solvation = 60.129078 kcal Electronic energy + Delta-G solvation = -27314.054886 eV Core-core repulsion = 23956.094545 eV Total energy + Delta-G solvation = -3357.960341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.06134 -40.66490 -38.26921 -35.39865 -34.00663 -33.64856 -31.17642 -29.99544 -29.56030 -28.74373 -27.92278 -26.57723 -24.69074 -24.24046 -22.70839 -22.17615 -21.67453 -20.78272 -19.58072 -18.32040 -17.50606 -17.03246 -16.62232 -16.31418 -16.00171 -15.75630 -15.20616 -14.94236 -14.81935 -14.64584 -14.37799 -14.29620 -14.23334 -14.02006 -13.79165 -13.53623 -13.22690 -13.13522 -12.88406 -12.73857 -12.57608 -12.52184 -12.34485 -12.24014 -12.01128 -11.88224 -11.66668 -11.59244 -11.37015 -11.26548 -10.80349 -10.75391 -10.50610 -10.43998 -10.25728 -9.23175 -9.09437 -8.13836 -6.20437 1.39246 1.41032 1.42738 1.52326 2.09969 2.41685 2.43528 2.94460 3.20743 3.54831 3.67115 3.87260 3.97620 4.03109 4.19207 4.23240 4.27386 4.32055 4.38904 4.46249 4.52314 4.59421 4.63092 4.72361 4.77192 4.84560 4.87132 4.89071 4.91445 4.99482 5.00296 5.12162 5.14747 5.17544 5.22025 5.29968 5.31970 5.45314 5.53130 5.57856 5.58862 5.60749 5.69242 5.88050 5.93446 6.03822 6.12091 6.21018 6.37312 6.59451 6.95477 7.35312 7.47275 8.98625 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.003898 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.500083 B = 7181.571925 C = 7687.713377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.105 0.895 4 C -0.121 4.121 5 C 0.030 3.970 6 N -0.533 5.533 7 C 0.080 3.920 8 C -0.052 4.052 9 C -0.109 4.109 10 C -0.135 4.135 11 C 0.043 3.957 12 C -0.510 4.510 13 H 0.065 0.935 14 C -0.004 4.004 15 N -0.938 5.938 16 Si 0.953 3.047 17 H -0.260 1.260 18 H -0.282 1.282 19 H -0.285 1.285 20 C 0.043 3.957 21 C 0.143 3.857 22 H 0.133 0.867 23 N -0.434 5.434 24 C -0.014 4.014 25 C -0.090 4.090 26 N -0.537 5.537 27 C 0.166 3.834 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.034 0.966 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.082 0.918 43 H -0.017 1.017 44 H -0.019 1.019 45 H 0.259 0.741 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.193 0.807 49 H 0.157 0.843 50 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.330 15.147 2.592 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.123 0.877 4 C -0.159 4.159 5 C -0.097 4.097 6 N -0.257 5.257 7 C -0.048 4.048 8 C -0.052 4.052 9 C -0.166 4.166 10 C -0.192 4.192 11 C 0.005 3.995 12 C -0.549 4.549 13 H 0.083 0.917 14 C -0.200 4.200 15 N -0.580 5.580 16 Si 0.779 3.221 17 H -0.184 1.184 18 H -0.208 1.208 19 H -0.211 1.211 20 C -0.086 4.086 21 C 0.041 3.959 22 H 0.150 0.850 23 N -0.116 5.116 24 C -0.148 4.148 25 C -0.236 4.236 26 N -0.256 5.256 27 C -0.116 4.116 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.001 0.999 44 H -0.001 1.001 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.210 0.790 49 H 0.175 0.825 50 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -18.903 14.255 3.057 23.872 hybrid contribution 2.093 0.046 -0.777 2.233 sum -16.811 14.301 2.279 22.188 Atomic orbital electron populations 1.21749 0.93893 1.01262 1.02901 1.21529 0.96708 0.99972 0.93226 0.87694 1.21892 0.94071 1.01580 0.98350 1.22801 0.95834 0.97130 0.93943 1.62045 1.12051 1.49249 1.02372 1.21990 0.86777 0.97995 0.98037 1.20451 0.95474 0.95190 0.94101 1.21722 0.97410 0.97816 0.99611 1.22130 1.00748 0.98515 0.97808 1.19026 0.91990 0.93421 0.95023 1.21649 1.07312 1.26447 0.99445 0.91660 1.25887 0.97080 0.98313 0.98758 1.70114 1.16152 1.42180 1.29553 0.85572 0.78212 0.78218 0.80124 1.18376 1.20844 1.21083 1.22417 0.93975 0.98607 0.93590 1.21819 0.92877 0.79641 1.01601 0.84973 1.45499 1.30018 1.10352 1.25767 1.23440 1.03415 0.87594 1.00392 1.22420 1.00854 1.00210 1.00128 1.70146 1.26124 1.12533 1.16804 1.25399 0.95081 0.91726 0.99408 0.91096 0.91697 0.94494 0.91815 0.89827 0.93777 0.88540 0.94790 0.93069 0.90512 0.94740 0.95090 0.94856 0.93644 0.89995 0.99854 1.00112 0.93266 0.91193 0.91258 0.78999 0.82510 0.75584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.99 71.98 0.65 -1.00 16 2 C -0.10 -1.16 2.61 -10.72 -0.03 -1.18 16 3 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -1.95 4.91 30.69 0.15 -1.80 16 5 C 0.03 0.58 2.95 86.37 0.25 0.84 16 6 N -0.53 -12.36 1.39 -896.09 -1.25 -13.61 16 7 C 0.08 2.46 4.59 86.30 0.40 2.86 16 8 C -0.05 -1.92 0.52 -52.19 -0.03 -1.95 16 9 C -0.11 -3.85 6.69 71.98 0.48 -3.37 16 10 C -0.14 -4.53 7.42 71.98 0.53 -4.00 16 11 C 0.04 2.18 3.85 29.85 0.11 2.29 16 12 C -0.51 -27.91 7.78 25.60 0.20 -27.71 16 13 H 0.07 3.42 5.78 -2.91 -0.02 3.40 16 14 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 15 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 16 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 C 0.04 0.77 5.00 86.33 0.43 1.20 16 21 C 0.14 2.04 2.89 45.04 0.13 2.17 16 22 H 0.13 1.11 8.09 -2.39 -0.02 1.09 16 23 N -0.43 -8.95 1.85 -506.28 -0.94 -9.88 16 24 C -0.01 -0.37 8.13 83.09 0.68 0.31 16 25 C -0.09 -2.72 11.87 83.52 0.99 -1.73 16 26 N -0.54 -16.05 11.25 -200.32 -2.25 -18.30 16 27 C 0.17 3.65 12.10 180.26 2.18 5.84 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.04 0.62 7.21 -2.39 -0.02 0.60 16 31 H 0.06 1.30 5.28 -2.38 -0.01 1.29 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.79 7.98 -2.39 -0.02 0.77 16 34 H 0.10 2.18 3.33 -2.38 -0.01 2.18 16 35 H 0.03 1.00 7.88 -2.38 -0.02 0.98 16 36 H 0.05 1.80 7.84 -2.38 -0.02 1.78 16 37 H 0.08 2.22 3.79 -2.38 -0.01 2.21 16 38 H 0.03 1.34 6.62 -2.39 -0.02 1.32 16 39 H 0.03 1.17 8.07 -2.38 -0.02 1.16 16 40 H 0.03 1.19 8.06 -2.39 -0.02 1.17 16 41 H 0.04 1.62 7.08 -2.38 -0.02 1.61 16 42 H 0.08 2.11 4.52 -2.39 -0.01 2.10 16 43 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H -0.02 -1.12 8.11 -2.39 -0.02 -1.14 16 45 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 46 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.47 8.11 -2.38 -0.02 1.45 16 48 H 0.19 5.27 3.12 -2.91 -0.01 5.27 16 49 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 50 H 0.23 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -68.94 358.57 6.38 -62.56 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.92 Total: 16.90 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 7.60 Total: -27.00 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -4.15 Total: -98.96 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.94 6.38 -62.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091961221.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.687 kcal (2) G-P(sol) polarization free energy of solvation -68.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds