Wall clock time and date at job start Tue Mar 31 2020 08:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47316 * 2 1 4 4 C 1.53000 * 109.47178 * 120.00000 * 2 1 3 5 5 C 1.53001 * 109.47417 * 174.99867 * 4 2 1 6 6 O 1.42897 * 109.47411 * 179.97438 * 5 4 2 7 7 C 1.35900 * 117.00265 * 179.97438 * 6 5 4 8 8 C 1.38726 * 120.05752 * 179.97438 * 7 6 5 9 9 C 1.38149 * 119.94477 * 180.02562 * 8 7 6 10 10 C 1.38266 * 120.05411 * 0.28574 * 9 8 7 11 11 C 1.50696 * 119.94508 * 179.70262 * 10 9 8 12 12 N 1.46898 * 109.47368 * 89.99244 * 11 10 9 13 13 C 1.46899 * 110.99935 * 293.95509 * 12 11 10 14 14 C 1.46899 * 111.00184 * 170.00343 * 12 11 10 15 15 H 1.09010 * 109.47102 * 310.00291 * 14 12 11 16 16 C 1.52997 * 109.47402 * 69.99560 * 14 12 11 17 17 C 1.50697 * 109.47328 * 190.00428 * 14 12 11 18 18 H 1.07998 * 120.00211 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99884 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00123 * 179.97438 * 19 17 14 21 21 Si 1.86799 * 120.00241 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46969 * 89.99684 * 21 19 17 23 23 H 1.48498 * 109.47213 * 209.99503 * 21 19 17 24 24 H 1.48497 * 109.46980 * 329.99894 * 21 19 17 25 25 C 1.38264 * 120.10762 * 359.44038 * 10 9 8 26 26 C 1.38144 * 120.05928 * 0.55731 * 25 10 9 27 27 H 1.09004 * 109.46955 * 300.00012 * 1 2 3 28 28 H 1.08999 * 109.47085 * 60.00264 * 1 2 3 29 29 H 1.09003 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47229 * 239.99541 * 2 1 3 31 31 H 1.09001 * 109.47346 * 59.99613 * 3 2 1 32 32 H 1.09000 * 109.47342 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47302 * 300.00133 * 3 2 1 34 34 H 1.09002 * 109.47390 * 54.99470 * 4 2 1 35 35 H 1.09000 * 109.47046 * 295.00081 * 4 2 1 36 36 H 1.08997 * 109.46746 * 59.99653 * 5 4 2 37 37 H 1.08995 * 109.46765 * 299.99933 * 5 4 2 38 38 H 1.08000 * 120.02799 * 0.02562 * 8 7 6 39 39 H 1.08002 * 119.97030 * 179.97438 * 9 8 7 40 40 H 1.08996 * 109.47057 * 209.99743 * 11 10 9 41 41 H 1.09005 * 109.46844 * 329.99277 * 11 10 9 42 42 H 1.08995 * 109.47343 * 60.00292 * 13 12 11 43 43 H 1.09001 * 109.46908 * 179.97438 * 13 12 11 44 44 H 1.08999 * 109.47602 * 299.99722 * 13 12 11 45 45 H 1.09004 * 109.46511 * 60.00724 * 16 14 12 46 46 H 1.09001 * 109.47264 * 179.97438 * 16 14 12 47 47 H 1.09000 * 109.47591 * 300.00776 * 16 14 12 48 48 H 0.96991 * 120.00651 * 180.02562 * 20 19 17 49 49 H 1.08007 * 119.96975 * 180.26053 * 25 10 9 50 50 H 1.08006 * 120.02939 * 179.70744 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8311 1.1880 6 8 4.0412 -1.5042 2.3550 7 6 5.3841 -1.6858 2.4576 8 6 5.9154 -2.3312 3.5647 9 6 7.2809 -2.5142 3.6669 10 6 8.1184 -2.0494 2.6696 11 6 9.6081 -2.2443 2.7868 12 7 9.9848 -3.5226 2.1687 13 6 9.4242 -4.6550 2.9178 14 6 11.4443 -3.6404 2.0506 15 1 11.8453 -2.7389 1.5871 16 6 12.0562 -3.8136 3.4422 17 6 11.7846 -4.8366 1.1997 18 1 10.9956 -5.4485 0.7880 19 6 13.1032 -5.1499 0.9466 20 7 13.4002 -6.1942 0.2044 21 14 14.4679 -4.0912 1.6580 22 1 14.8578 -4.6163 2.9912 23 1 15.6430 -4.1230 0.7506 24 1 13.9879 -2.6930 1.7976 25 6 7.5908 -1.4108 1.5626 26 6 6.2260 -1.2255 1.4557 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6054 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 3.9994 0.1674 1.1420 37 1 3.8531 -1.3940 0.3003 38 1 5.2621 -2.6904 4.3461 39 1 7.6950 -3.0162 4.5288 40 1 10.1223 -1.4291 2.2779 41 1 9.8918 -2.2521 3.8392 42 1 8.3369 -4.5799 2.9302 43 1 9.7180 -5.5888 2.4384 44 1 9.8013 -4.6368 3.9403 45 1 11.6553 -4.7151 3.9056 46 1 13.1392 -3.9015 3.3545 47 1 11.8101 -2.9483 4.0577 48 1 14.3278 -6.4149 0.0266 49 1 8.2467 -1.0524 0.7829 50 1 5.8148 -0.7224 0.5929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:37 Heat of formation + Delta-G solvation = -19.058874 kcal Electronic energy + Delta-G solvation = -24720.931558 eV Core-core repulsion = 21327.244618 eV Total energy + Delta-G solvation = -3393.686940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.17748 -38.40459 -37.10660 -36.29964 -32.78845 -31.31636 -30.87525 -29.90928 -28.83534 -27.59441 -26.39819 -25.24479 -24.25895 -23.54372 -22.06370 -20.84059 -20.36853 -19.23360 -18.11412 -16.62518 -16.42661 -16.08150 -15.63278 -15.14527 -14.93641 -14.57777 -14.40430 -14.20789 -13.90741 -13.69707 -13.32354 -13.29075 -13.07377 -12.84425 -12.61648 -12.48605 -12.21037 -12.04373 -12.01372 -11.69191 -11.37967 -11.23447 -11.20921 -11.17291 -11.10376 -11.01447 -10.75757 -10.62065 -10.55831 -10.21710 -9.99526 -9.51277 -9.05095 -8.83140 -8.57194 -7.97021 -7.29023 -6.04785 -4.02523 1.49002 1.58567 3.07955 3.26113 3.36101 3.38808 3.88636 4.40526 4.41613 4.42812 4.54198 4.79137 4.89645 4.93008 4.97779 5.07336 5.08955 5.21761 5.22411 5.24309 5.29509 5.39300 5.42124 5.47800 5.55192 5.57557 5.59966 5.75722 5.77858 5.86540 5.90150 5.95222 6.03292 6.13842 6.18108 6.25700 6.30170 6.32718 6.41163 6.49979 6.57371 6.72592 6.89482 6.90081 6.91306 7.20564 7.46080 7.65283 7.96129 8.09789 8.68463 9.03932 9.57312 11.08409 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.028566 B = 0.002329 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.954959 B =12016.905673 C =12305.059335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.153 4.153 4 C -0.114 4.114 5 C 0.058 3.942 6 O -0.320 6.320 7 C 0.119 3.881 8 C -0.154 4.154 9 C -0.075 4.075 10 C -0.098 4.098 11 C 0.089 3.911 12 N -0.517 5.517 13 C 0.030 3.970 14 C 0.180 3.820 15 H 0.038 0.962 16 C -0.186 4.186 17 C -0.499 4.499 18 H 0.082 0.918 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.886 3.114 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.269 1.269 25 C -0.059 4.059 26 C -0.209 4.209 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.028 0.972 48 H 0.263 0.737 49 H 0.126 0.874 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.020 13.957 3.688 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.211 4.211 4 C -0.151 4.151 5 C -0.017 4.017 6 O -0.234 6.234 7 C 0.074 3.926 8 C -0.173 4.173 9 C -0.093 4.093 10 C -0.098 4.098 11 C -0.039 4.039 12 N -0.240 5.240 13 C -0.118 4.118 14 C 0.073 3.927 15 H 0.056 0.944 16 C -0.245 4.245 17 C -0.537 4.537 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.225 1.225 24 H -0.194 1.194 25 C -0.078 4.078 26 C -0.228 4.228 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.073 0.927 49 H 0.144 0.856 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.219 13.783 3.248 26.348 hybrid contribution 1.373 0.516 0.980 1.764 sum -20.846 14.299 4.228 25.630 Atomic orbital electron populations 1.21821 0.94628 1.01982 1.01946 1.21049 0.96171 0.96380 0.97719 1.21945 1.01266 0.95813 1.02032 1.21604 0.92854 1.01859 0.98826 1.22854 0.95189 0.96533 0.87123 1.86004 1.19883 1.74453 1.43068 1.18923 0.81941 0.96669 0.95033 1.20316 0.95130 1.04014 0.97853 1.20879 0.92060 0.97732 0.98671 1.19834 0.96021 0.99271 0.94700 1.21036 0.90605 0.94620 0.97606 1.62198 1.12996 0.99693 1.49135 1.22343 0.98087 0.95930 0.95447 1.19810 0.82626 0.98565 0.91731 0.94375 1.22830 1.00874 0.99824 1.00978 1.20934 0.93146 1.09945 1.29687 0.90011 1.24927 0.98435 0.94951 0.95031 1.69877 1.18674 1.26721 1.38622 0.86884 0.81792 0.81597 0.77993 1.20836 1.22464 1.19387 1.20845 0.93916 0.96338 0.96692 1.21176 0.94509 1.07123 0.99969 0.92546 0.92449 0.92489 0.90821 0.92459 0.92416 0.92483 0.90799 0.90869 0.91965 0.92104 0.85695 0.85758 0.90725 0.94796 0.93128 0.90319 0.96582 0.92419 0.93745 0.95337 0.92677 0.85624 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.19 37.16 0.34 -0.44 16 2 C -0.09 -0.58 2.92 -90.62 -0.26 -0.84 16 3 C -0.15 -0.89 8.95 37.15 0.33 -0.56 16 4 C -0.11 -0.85 5.05 -26.73 -0.14 -0.98 16 5 C 0.06 0.54 4.50 37.16 0.17 0.70 16 6 O -0.32 -3.97 10.14 -19.42 -0.20 -4.17 16 7 C 0.12 1.61 6.69 -39.22 -0.26 1.35 16 8 C -0.15 -2.07 9.99 -39.43 -0.39 -2.47 16 9 C -0.07 -1.05 7.96 -39.60 -0.32 -1.37 16 10 C -0.10 -1.50 4.88 -104.60 -0.51 -2.01 16 11 C 0.09 1.53 4.68 -4.98 -0.02 1.50 16 12 N -0.52 -10.70 4.69 -237.74 -1.12 -11.81 16 13 C 0.03 0.58 8.26 60.06 0.50 1.08 16 14 C 0.18 4.24 1.90 -68.87 -0.13 4.11 16 15 H 0.04 0.93 6.99 -51.92 -0.36 0.57 16 16 C -0.19 -4.04 7.92 37.16 0.29 -3.74 16 17 C -0.50 -13.93 8.49 -34.44 -0.29 -14.22 16 18 H 0.08 2.51 7.37 -52.49 -0.39 2.12 16 19 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 20 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 21 Si 0.89 21.91 24.38 -169.99 -4.14 17.77 16 22 H -0.28 -6.80 6.87 56.52 0.39 -6.41 16 23 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 25 C -0.06 -0.86 9.69 -39.61 -0.38 -1.25 16 26 C -0.21 -2.75 9.04 -39.43 -0.36 -3.11 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.53 6.09 -51.93 -0.32 0.21 16 37 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.12 1.59 8.03 -52.49 -0.42 1.17 16 40 H 0.07 1.24 7.88 -51.93 -0.41 0.84 16 41 H 0.03 0.56 7.00 -51.93 -0.36 0.19 16 42 H 0.05 0.88 6.16 -51.93 -0.32 0.56 16 43 H 0.08 1.70 6.76 -51.93 -0.35 1.35 16 44 H 0.02 0.29 6.46 -51.93 -0.34 -0.05 16 45 H 0.06 1.23 6.42 -51.93 -0.33 0.90 16 46 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 47 H 0.03 0.53 6.91 -51.93 -0.36 0.17 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 50 H 0.12 1.34 6.30 -52.48 -0.33 1.01 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -30.58 378.65 -9.12 -39.70 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.61 Total: -0.07 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.53 Total: -20.40 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.34 Total: -38.54 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.20 Total: -4.17 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.14 Total: 17.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.58 -9.12 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.641 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds