Wall clock time and date at job start Tue Mar 31 2020 08:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 C 1.52999 * 109.47304 * 120.00154 * 2 1 3 5 5 C 1.53007 * 109.46821 * 64.99740 * 4 2 1 6 6 O 1.42908 * 109.46914 * 179.97438 * 5 4 2 7 7 C 1.35892 * 116.99751 * 180.02562 * 6 5 4 8 8 C 1.38736 * 120.05364 * 180.02562 * 7 6 5 9 9 C 1.38145 * 119.94336 * 180.02562 * 8 7 6 10 10 C 1.38264 * 120.05726 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.94504 * 179.97438 * 10 9 8 12 12 N 1.46895 * 109.47089 * 90.00169 * 11 10 9 13 13 C 1.46904 * 110.99841 * 66.04861 * 12 11 10 14 14 C 1.46899 * 111.00230 * 190.00004 * 12 11 10 15 15 H 1.09002 * 109.47043 * 55.00375 * 14 12 11 16 16 C 1.52997 * 109.47254 * 295.00304 * 14 12 11 17 17 C 1.50699 * 109.47244 * 175.00202 * 14 12 11 18 18 H 1.08000 * 119.99792 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99902 * 179.97438 * 17 14 12 20 20 N 1.31515 * 120.00126 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99745 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47256 * 90.00491 * 21 19 17 23 23 H 1.48506 * 109.46930 * 210.00332 * 21 19 17 24 24 H 1.48499 * 109.47104 * 330.00193 * 21 19 17 25 25 C 1.38261 * 120.10998 * 0.26069 * 10 9 8 26 26 C 1.38146 * 120.05869 * 359.44202 * 25 10 9 27 27 H 1.09010 * 109.46557 * 299.99468 * 1 2 3 28 28 H 1.08996 * 109.47192 * 59.99698 * 1 2 3 29 29 H 1.09001 * 109.46942 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46791 * 239.99901 * 2 1 3 31 31 H 1.08995 * 109.46909 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47412 * 300.00166 * 3 2 1 33 33 H 1.09003 * 109.46706 * 60.00252 * 3 2 1 34 34 H 1.09003 * 109.47065 * 305.00389 * 4 2 1 35 35 H 1.08995 * 109.47456 * 184.99853 * 4 2 1 36 36 H 1.08995 * 109.47106 * 60.00449 * 5 4 2 37 37 H 1.09001 * 109.47283 * 299.99828 * 5 4 2 38 38 H 1.08005 * 120.02948 * 359.97438 * 8 7 6 39 39 H 1.08000 * 119.96948 * 179.97438 * 9 8 7 40 40 H 1.09002 * 109.47076 * 330.00310 * 11 10 9 41 41 H 1.09000 * 109.47366 * 210.00937 * 11 10 9 42 42 H 1.08992 * 109.47139 * 183.95276 * 13 12 11 43 43 H 1.08998 * 109.46871 * 303.95426 * 13 12 11 44 44 H 1.09004 * 109.46908 * 63.95125 * 13 12 11 45 45 H 1.09002 * 109.47153 * 300.00004 * 16 14 12 46 46 H 1.08998 * 109.47533 * 59.99633 * 16 14 12 47 47 H 1.08996 * 109.47853 * 179.97438 * 16 14 12 48 48 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 49 49 H 1.08001 * 119.97418 * 179.69957 * 25 10 9 50 50 H 1.07994 * 120.03134 * 180.25274 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 8 2.1122 -2.8694 2.3544 7 6 1.8358 -4.1960 2.4568 8 6 2.2683 -4.9124 3.5634 9 6 1.9865 -6.2610 3.6649 10 6 1.2747 -6.8969 2.6646 11 6 0.9693 -8.3683 2.7776 12 7 -0.3141 -8.5503 3.4687 13 6 -1.4246 -8.0237 2.6640 14 6 -0.5335 -9.9626 3.8083 15 1 0.3120 -10.3324 4.3884 16 6 -0.6673 -10.7814 2.5229 17 6 -1.7958 -10.0935 4.6210 18 1 -2.3772 -9.2155 4.8609 19 6 -2.2091 -11.3344 5.0575 20 7 -1.5015 -12.4036 4.7650 21 14 -3.7742 -11.4967 6.0643 22 1 -4.9286 -11.7074 5.1542 23 1 -3.6522 -12.6551 6.9855 24 1 -3.9859 -10.2568 6.8535 25 6 0.8478 -6.1865 1.5580 26 6 1.1216 -4.8364 1.4546 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6054 -0.2618 2.1370 35 1 3.1264 -0.6444 1.2951 36 1 2.0699 -2.6550 0.3002 37 1 0.5489 -2.2724 1.1420 38 1 2.8254 -4.4163 4.3444 39 1 2.3233 -6.8191 4.5259 40 1 1.7599 -8.8610 3.3437 41 1 0.9103 -8.8048 1.7806 42 1 -2.3535 -8.1073 3.2280 43 1 -1.2366 -6.9767 2.4266 44 1 -1.5075 -8.5965 1.7403 45 1 -1.5129 -10.4116 1.9429 46 1 0.2456 -10.6867 1.9350 47 1 -0.8297 -11.8294 2.7748 48 1 -1.7920 -13.2765 5.0724 49 1 0.2962 -6.6865 0.7756 50 1 0.7844 -4.2810 0.5919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:40 Heat of formation + Delta-G solvation = -27.280058 kcal Electronic energy + Delta-G solvation = -24704.709316 eV Core-core repulsion = 21310.665879 eV Total energy + Delta-G solvation = -3394.043437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.13343 -38.30204 -36.98876 -36.19304 -32.84965 -31.13727 -30.74872 -29.70600 -28.18730 -27.58606 -26.31710 -25.14746 -24.37034 -23.25915 -22.13555 -20.79907 -20.36356 -19.13922 -18.07434 -16.41243 -16.22117 -15.99998 -15.37283 -15.14361 -14.88713 -14.55781 -14.33411 -14.03749 -13.91233 -13.55882 -13.28687 -13.09394 -13.02266 -12.78361 -12.55459 -12.41453 -11.99703 -11.95150 -11.65724 -11.31337 -11.23977 -11.15907 -11.11744 -10.98572 -10.98071 -10.74832 -10.69235 -10.55657 -10.53049 -10.35997 -9.99719 -9.78059 -8.86677 -8.76611 -8.37183 -7.90899 -7.08616 -5.98988 -4.02434 1.55269 1.63587 3.11025 3.32129 3.38748 3.43315 3.95220 4.41732 4.43335 4.44403 4.54891 4.79818 4.91224 4.95481 5.08121 5.10360 5.20190 5.22240 5.24919 5.32351 5.37973 5.39550 5.46314 5.50122 5.60635 5.62697 5.63382 5.76546 5.85122 5.90792 5.96116 5.98455 6.17639 6.25833 6.33620 6.44113 6.46134 6.55444 6.69976 6.84093 6.92970 6.96775 6.98831 7.14590 7.50325 7.51323 7.74292 7.86129 8.14583 8.41246 8.62717 9.03671 9.62429 11.08048 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.026368 B = 0.002313 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.650483 B =12101.837905 C =12441.264546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.114 4.114 5 C 0.059 3.941 6 O -0.320 6.320 7 C 0.117 3.883 8 C -0.153 4.153 9 C -0.061 4.061 10 C -0.094 4.094 11 C 0.092 3.908 12 N -0.529 5.529 13 C 0.032 3.968 14 C 0.210 3.790 15 H 0.039 0.961 16 C -0.173 4.173 17 C -0.498 4.498 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.076 4.076 26 C -0.210 4.210 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.016 0.984 45 H 0.030 0.970 46 H 0.007 0.993 47 H 0.088 0.912 48 H 0.260 0.740 49 H 0.119 0.881 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 21.936 -10.171 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.017 4.017 6 O -0.234 6.234 7 C 0.072 3.928 8 C -0.172 4.172 9 C -0.080 4.080 10 C -0.095 4.095 11 C -0.036 4.036 12 N -0.252 5.252 13 C -0.116 4.116 14 C 0.104 3.896 15 H 0.057 0.943 16 C -0.232 4.232 17 C -0.536 4.536 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.095 4.095 26 C -0.229 4.229 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.049 0.951 46 H 0.026 0.974 47 H 0.106 0.894 48 H 0.069 0.931 49 H 0.137 0.863 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.685 22.121 -9.553 25.292 hybrid contribution -1.094 -0.760 -0.501 1.423 sum 6.591 21.361 -10.055 24.512 Atomic orbital electron populations 1.21953 0.94964 1.02115 1.02083 1.21048 0.96147 0.96427 0.97639 1.21821 1.01072 0.95493 1.01993 1.21606 1.02084 0.92585 0.98890 1.22839 0.99101 0.92672 0.87039 1.86009 1.74741 1.19568 1.43081 1.18919 0.96250 0.82510 0.95126 1.20386 1.05115 0.94078 0.97611 1.20885 0.96196 0.93005 0.97891 1.19923 0.98492 0.96855 0.94243 1.20977 0.94660 0.90375 0.97625 1.62385 0.99499 1.22066 1.41257 1.22281 0.96041 0.97370 0.95924 1.19333 0.97546 0.80363 0.92360 0.94269 1.22407 0.96558 1.05639 0.98597 1.21122 1.07569 0.92907 1.32032 0.91955 1.24933 0.97232 0.95852 0.96368 1.69886 1.38739 0.98444 1.46366 0.86526 0.83362 0.77637 0.80053 1.20877 1.21321 1.19860 1.20855 0.97824 0.93122 0.97653 1.21105 1.05507 0.96165 1.00110 0.92373 0.92498 0.92392 0.90948 0.92538 0.92469 0.92484 0.90771 0.90865 0.92344 0.91922 0.85638 0.85185 0.90774 0.94870 0.91040 0.93679 0.96542 0.95110 0.97381 0.89356 0.93054 0.86254 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.95 37.16 0.33 -0.61 16 2 C -0.09 -0.58 2.92 -90.62 -0.26 -0.84 16 3 C -0.15 -0.78 9.19 37.16 0.34 -0.44 16 4 C -0.11 -0.86 5.05 -26.73 -0.14 -1.00 16 5 C 0.06 0.55 4.50 37.16 0.17 0.72 16 6 O -0.32 -4.07 10.14 -19.40 -0.20 -4.27 16 7 C 0.12 1.63 6.69 -39.21 -0.26 1.37 16 8 C -0.15 -2.17 9.99 -39.43 -0.39 -2.57 16 9 C -0.06 -0.93 9.69 -39.61 -0.38 -1.31 16 10 C -0.09 -1.53 4.88 -104.60 -0.51 -2.04 16 11 C 0.09 1.68 4.56 -4.98 -0.02 1.66 16 12 N -0.53 -11.44 4.73 -237.73 -1.13 -12.56 16 13 C 0.03 0.65 8.56 60.07 0.51 1.16 16 14 C 0.21 5.27 2.34 -68.87 -0.16 5.11 16 15 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 16 C -0.17 -4.17 8.28 37.16 0.31 -3.86 16 17 C -0.50 -13.64 7.94 -34.44 -0.27 -13.91 16 18 H 0.06 1.72 6.75 -52.49 -0.35 1.37 16 19 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 20 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 21 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.08 -1.11 7.90 -39.61 -0.31 -1.43 16 26 C -0.21 -2.81 9.04 -39.43 -0.36 -3.17 16 27 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 37 H 0.06 0.57 6.09 -51.93 -0.32 0.25 16 38 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.07 1.35 7.94 -51.93 -0.41 0.94 16 41 H 0.03 0.61 6.88 -51.93 -0.36 0.25 16 42 H 0.07 1.54 6.53 -51.93 -0.34 1.20 16 43 H 0.04 0.81 5.91 -51.93 -0.31 0.50 16 44 H 0.02 0.32 6.28 -51.93 -0.33 0.00 16 45 H 0.03 0.72 6.39 -51.93 -0.33 0.39 16 46 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 47 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.12 1.64 8.00 -52.49 -0.42 1.22 16 50 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -29.08 384.52 -10.11 -39.19 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.68 Total: -0.06 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -1.51 Total: -19.68 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.50 Total: -37.40 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.08 -10.11 -39.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.911 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds