Wall clock time and date at job start Tue Mar 31 2020 08:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 N 1.46503 * 109.46967 * 179.97438 * 3 2 1 5 5 N 1.40084 * 126.03833 * 270.02420 * 4 3 2 6 6 C 1.30834 * 108.20635 * 179.70210 * 5 4 3 7 7 C 1.50696 * 125.90081 * 180.26080 * 6 5 4 8 8 C 1.39870 * 108.20275 * 0.43353 * 6 5 4 9 9 C 1.50705 * 126.04219 * 179.81944 * 8 6 5 10 10 N 1.46902 * 109.46924 * 269.69616 * 9 8 6 11 11 C 1.46904 * 110.99723 * 189.99998 * 10 9 8 12 12 C 1.50703 * 109.47215 * 76.31642 * 11 10 9 13 13 H 1.07998 * 119.99866 * 355.17888 * 12 11 10 14 14 C 1.37877 * 119.99879 * 175.18253 * 12 11 10 15 15 N 1.31516 * 119.99886 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99754 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47254 * 59.99593 * 16 14 12 18 18 H 1.48501 * 109.46806 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46934 * 299.99497 * 16 14 12 20 20 C 1.46902 * 111.00164 * 66.04619 * 10 9 8 21 21 C 1.52999 * 109.46791 * 196.21710 * 20 10 9 22 22 C 1.53001 * 117.49762 * 243.55567 * 21 20 10 23 23 C 1.53004 * 117.49539 * 174.89844 * 21 20 10 24 24 C 1.34947 * 126.03663 * 90.00269 * 4 3 2 25 25 C 1.50700 * 126.12812 * 359.97438 * 24 4 3 26 26 H 1.09008 * 109.46805 * 60.00454 * 1 2 3 27 27 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47375 * 300.00285 * 1 2 3 29 29 H 1.09002 * 109.47014 * 239.99707 * 2 1 3 30 30 H 1.08997 * 109.47101 * 119.99895 * 2 1 3 31 31 H 1.09002 * 109.47407 * 59.99947 * 3 2 1 32 32 H 1.09003 * 109.47326 * 299.99597 * 3 2 1 33 33 H 1.09004 * 109.47309 * 270.20523 * 7 6 5 34 34 H 1.09000 * 109.47341 * 30.20640 * 7 6 5 35 35 H 1.09003 * 109.47665 * 150.20621 * 7 6 5 36 36 H 1.08996 * 109.47262 * 149.69795 * 9 8 6 37 37 H 1.08997 * 109.46994 * 29.69635 * 9 8 6 38 38 H 1.08995 * 109.46826 * 316.31623 * 11 10 9 39 39 H 1.08997 * 109.47292 * 196.31615 * 11 10 9 40 40 H 0.96996 * 119.99499 * 180.02562 * 15 14 12 41 41 H 1.08998 * 109.46892 * 316.21832 * 20 10 9 42 42 H 1.08997 * 109.46929 * 76.21535 * 20 10 9 43 43 H 1.08996 * 115.55564 * 29.22861 * 21 20 10 44 44 H 1.09005 * 117.49573 * 359.97438 * 22 21 20 45 45 H 1.08998 * 117.49948 * 145.02347 * 22 21 20 46 46 H 1.09003 * 117.49705 * 214.98286 * 23 21 20 47 47 H 1.09003 * 117.49717 * 359.97438 * 23 21 20 48 48 H 1.09003 * 109.47203 * 270.02618 * 25 24 4 49 49 H 1.09002 * 109.46916 * 30.02779 * 25 24 4 50 50 H 1.09000 * 109.47313 * 150.03030 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3287 1.4421 1.1337 6 6 5.5743 1.4357 0.7336 7 6 6.7889 1.4275 1.6256 8 6 5.5840 1.4418 -0.6650 9 6 6.8087 1.4415 -1.5433 10 7 7.2070 2.8264 -1.8285 11 6 8.2456 2.8723 -2.8664 12 6 7.6185 2.6329 -4.2157 13 1 6.5694 2.3866 -4.2875 14 6 8.3840 2.7283 -5.3584 15 7 9.6614 3.0286 -5.2710 16 14 7.6064 2.4322 -7.0309 17 1 6.5127 3.4127 -7.2488 18 1 8.6343 2.5943 -8.0903 19 1 7.0540 1.0548 -7.0830 20 6 7.6536 3.5082 -0.6063 21 6 7.6719 5.0196 -0.8432 22 6 9.0246 5.7304 -0.7660 23 6 7.9961 5.9180 0.3521 24 6 4.2994 1.4423 -1.0903 25 6 3.8384 1.4416 -2.5251 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 7.0854 2.4532 1.8452 34 1 6.5532 0.9103 2.5557 35 1 7.6068 0.9130 1.1211 36 1 6.5852 0.9279 -2.4783 37 1 7.6224 0.9274 -1.0319 38 1 8.9901 2.1009 -2.6698 39 1 8.7254 3.8510 -2.8573 40 1 10.1998 3.0961 -6.0749 41 1 6.9691 3.2765 0.2097 42 1 8.6564 3.1688 -0.3468 43 1 6.9493 5.3904 -1.5700 44 1 9.9014 5.1213 -0.5461 45 1 9.1917 6.5690 -1.4419 46 1 7.4870 6.8800 0.4114 47 1 8.1960 5.4323 1.3073 48 1 3.7272 0.4138 -2.8705 49 1 2.8800 1.9555 -2.5990 50 1 4.5747 1.9550 -3.1435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:19 Heat of formation + Delta-G solvation = 87.492980 kcal Electronic energy + Delta-G solvation = -26145.182962 eV Core-core repulsion = 22788.409209 eV Total energy + Delta-G solvation = -3356.773754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11022 -37.67177 -35.84171 -35.09750 -32.82435 -32.54118 -31.32355 -28.88168 -27.92956 -27.41265 -25.80343 -24.79859 -23.38077 -21.92265 -21.78387 -20.96993 -19.66637 -19.18490 -18.81589 -16.34451 -16.33121 -15.48745 -15.31705 -15.16345 -14.54587 -14.25942 -13.97077 -13.79815 -13.53964 -13.30973 -13.03761 -12.94992 -12.76583 -12.37302 -12.29370 -12.23433 -12.02894 -11.86611 -11.75572 -11.50442 -11.31978 -11.22150 -11.10448 -11.05737 -10.97845 -10.71065 -10.56750 -10.49385 -9.98811 -9.89717 -9.73804 -9.26325 -9.07221 -8.71626 -8.35322 -7.86659 -7.08319 -5.95152 -3.95629 2.18289 2.71458 3.10049 3.35419 3.40209 3.41966 4.32529 4.47674 4.50491 4.65408 4.86127 4.96182 5.02461 5.03445 5.20004 5.28379 5.35972 5.37807 5.40585 5.43609 5.45652 5.60667 5.69249 5.70858 5.76227 5.78990 5.81396 5.91319 5.92961 5.96767 5.98704 6.06744 6.12466 6.28961 6.30551 6.35129 6.43531 6.48068 6.55569 6.63160 6.76506 6.91064 7.08805 7.39416 7.39773 7.48263 7.90351 8.09095 8.24038 8.37348 8.66724 9.11607 9.67611 11.15297 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.004855 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.111537 B = 5766.079627 C = 7644.128210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.137 3.863 4 N -0.377 5.377 5 N -0.308 5.308 6 C 0.077 3.923 7 C -0.074 4.074 8 C -0.214 4.214 9 C 0.139 3.861 10 N -0.527 5.527 11 C 0.192 3.808 12 C -0.499 4.499 13 H 0.060 0.940 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.082 3.918 21 C -0.125 4.125 22 C -0.179 4.179 23 C -0.192 4.192 24 C 0.102 3.898 25 C -0.094 4.094 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.024 0.976 38 H -0.015 1.015 39 H 0.039 0.961 40 H 0.260 0.740 41 H 0.072 0.928 42 H 0.020 0.980 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.364 -2.808 11.395 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.015 3.985 4 N -0.160 5.160 5 N -0.131 5.131 6 C -0.089 4.089 7 C -0.132 4.132 8 C -0.225 4.225 9 C 0.011 3.989 10 N -0.251 5.251 11 C 0.067 3.933 12 C -0.538 4.538 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.046 4.046 21 C -0.144 4.144 22 C -0.216 4.216 23 C -0.229 4.229 24 C -0.025 4.025 25 C -0.152 4.152 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.042 0.958 38 H 0.003 0.997 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.038 0.962 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.535 -2.523 12.090 18.323 hybrid contribution 0.874 -0.454 -1.392 1.705 sum -12.661 -2.977 10.698 16.841 Atomic orbital electron populations 1.21695 0.94597 1.02259 1.02100 1.21928 0.96329 0.96313 1.03314 1.21616 0.75082 0.97896 1.03908 1.48322 1.05496 1.58730 1.03450 1.77171 1.01088 1.26914 1.07891 1.22101 0.93250 0.99694 0.93848 1.20259 0.92703 1.02723 0.97543 1.19810 0.94511 1.15340 0.92843 1.20202 0.91057 0.90729 0.96957 1.62101 1.42243 1.13420 1.07363 1.19762 0.88048 0.96894 0.88596 1.21126 0.95951 1.46347 0.90393 0.92134 1.24958 0.94826 0.95746 0.99024 1.69947 1.05897 1.49289 1.28769 0.86655 0.78858 0.78632 0.83790 1.20313 1.21510 1.20368 1.21747 0.97479 0.91464 0.93954 1.22263 0.98679 0.93965 0.99448 1.22959 0.93708 1.03445 1.01444 1.22930 1.04872 1.01287 0.93828 1.20806 0.90628 1.00617 0.90405 1.20516 1.02327 1.02769 0.89612 0.92343 0.92160 0.92413 0.91332 0.91173 0.89290 0.89281 0.90541 0.91467 0.90574 0.89768 0.95757 0.99678 0.94338 0.93046 0.90996 0.96161 0.87371 0.89289 0.89329 0.89589 0.89599 0.90888 0.91999 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.31 6.26 -26.73 -0.17 -1.48 16 3 C 0.14 1.47 6.24 -4.04 -0.03 1.45 16 4 N -0.38 -5.65 3.61 -57.14 -0.21 -5.85 16 5 N -0.31 -5.16 12.58 33.67 0.42 -4.74 16 6 C 0.08 1.28 6.29 -82.41 -0.52 0.76 16 7 C -0.07 -1.00 9.22 36.00 0.33 -0.67 16 8 C -0.21 -3.75 5.00 -105.05 -0.52 -4.28 16 9 C 0.14 2.70 4.69 -4.97 -0.02 2.68 16 10 N -0.53 -11.16 4.37 -237.51 -1.04 -12.20 16 11 C 0.19 4.88 4.59 -4.97 -0.02 4.85 16 12 C -0.50 -13.57 8.63 -34.44 -0.30 -13.86 16 13 H 0.06 1.60 7.46 -52.49 -0.39 1.21 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.08 1.53 4.86 -3.82 -0.02 1.51 16 21 C -0.12 -2.25 4.99 -90.62 -0.45 -2.70 16 22 C -0.18 -2.97 10.01 -26.69 -0.27 -3.24 16 23 C -0.19 -2.83 10.25 -26.69 -0.27 -3.11 16 24 C 0.10 1.64 6.93 -82.26 -0.57 1.07 16 25 C -0.09 -1.31 9.72 36.01 0.35 -0.96 16 26 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.82 7.05 -51.93 -0.37 0.46 16 33 H 0.08 0.99 6.86 -51.93 -0.36 0.64 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.00 7.25 -51.93 -0.38 0.63 16 36 H 0.08 1.74 7.00 -51.93 -0.36 1.37 16 37 H 0.02 0.47 7.23 -51.93 -0.38 0.09 16 38 H -0.01 -0.40 7.99 -51.93 -0.41 -0.81 16 39 H 0.04 1.06 6.98 -51.93 -0.36 0.69 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 41 H 0.07 1.27 3.68 -51.93 -0.19 1.07 16 42 H 0.02 0.38 7.78 -51.93 -0.40 -0.02 16 43 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 44 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 45 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.06 0.72 7.08 -51.93 -0.37 0.35 16 50 H 0.10 1.71 7.55 -51.93 -0.39 1.32 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -30.82 395.70 -10.33 -41.15 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.99 Total: 2.31 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.21 Total: -17.20 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.08 Total: -48.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.82 -10.33 -41.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.645 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds