Wall clock time and date at job start Tue Mar 31 2020 08:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47281 * 2 1 4 4 N 1.30834 * 125.89805 * 275.69120 * 3 2 1 5 5 N 1.40082 * 108.20312 * 180.25897 * 4 3 2 6 6 C 1.46503 * 126.04014 * 179.73852 * 5 4 3 7 7 C 1.34949 * 107.92869 * 359.71928 * 5 4 3 8 8 C 1.50698 * 126.13197 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47343 * 93.69147 * 8 7 5 10 10 C 1.35320 * 107.74259 * 0.02562 * 7 5 4 11 11 C 1.50692 * 126.04018 * 180.02562 * 10 7 5 12 12 N 1.46509 * 109.46944 * 276.58306 * 11 10 7 13 13 C 1.36938 * 120.00238 * 96.17201 * 12 11 10 14 14 H 1.07997 * 120.00311 * 234.00057 * 13 12 11 15 15 C 1.38820 * 119.99843 * 53.99635 * 13 12 11 16 16 N 1.31618 * 119.99658 * 14.27012 * 15 13 12 17 17 Si 1.86796 * 120.00024 * 194.26422 * 15 13 12 18 18 H 1.48502 * 109.46925 * 60.00118 * 17 15 13 19 19 H 1.48492 * 109.47288 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47147 * 300.00522 * 17 15 13 21 21 C 1.46495 * 119.99840 * 276.17269 * 12 11 10 22 22 C 1.54966 * 110.92441 * 120.84263 * 21 12 11 23 23 C 1.54264 * 104.15952 * 156.29397 * 22 21 12 24 24 C 1.53875 * 106.64422 * 336.44680 * 23 22 21 25 25 C 1.54269 * 106.59572 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47127 * 64.87239 * 1 2 3 27 27 H 1.09002 * 109.47465 * 184.87653 * 1 2 3 28 28 H 1.09000 * 109.47202 * 304.87703 * 1 2 3 29 29 H 1.09000 * 109.47298 * 239.99925 * 2 1 3 30 30 H 1.09004 * 109.47461 * 120.00301 * 2 1 3 31 31 H 1.08996 * 109.47579 * 269.97707 * 6 5 4 32 32 H 1.09007 * 109.47082 * 29.97735 * 6 5 4 33 33 H 1.09003 * 109.47445 * 149.96984 * 6 5 4 34 34 H 1.08997 * 109.47286 * 213.69394 * 8 7 5 35 35 H 1.09003 * 109.46741 * 333.69519 * 8 7 5 36 36 H 1.09000 * 109.47253 * 64.87946 * 9 8 7 37 37 H 1.08993 * 109.47384 * 184.87841 * 9 8 7 38 38 H 1.09000 * 109.47370 * 304.88025 * 9 8 7 39 39 H 1.08998 * 109.47711 * 156.58253 * 11 10 7 40 40 H 1.08998 * 109.47633 * 36.57716 * 11 10 7 41 41 H 0.97005 * 119.99415 * 184.97454 * 16 15 13 42 42 H 1.08999 * 110.67181 * 357.53834 * 21 12 11 43 43 H 1.08999 * 110.47463 * 37.64585 * 22 21 12 44 44 H 1.08998 * 110.53325 * 274.97554 * 22 21 12 45 45 H 1.09000 * 110.03057 * 217.13796 * 23 22 21 46 46 H 1.09003 * 110.03021 * 95.75653 * 23 22 21 47 47 H 1.09000 * 110.03174 * 119.25724 * 24 23 22 48 48 H 1.08994 * 110.03423 * 240.64359 * 24 23 22 49 49 H 1.08992 * 110.48595 * 142.28962 * 25 24 23 50 50 H 1.09001 * 110.48201 * 264.79965 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1890 2.1791 -1.0546 5 7 2.6793 3.4212 -0.6315 6 6 2.9990 4.5610 -1.4946 7 6 2.8048 3.3827 0.7115 8 6 3.2991 4.5027 1.5903 9 6 2.1069 5.3133 2.1025 10 6 2.4083 2.1577 1.1278 11 6 2.3812 1.6717 2.5539 12 7 3.7133 1.1931 2.9322 13 6 4.5749 2.0224 3.5993 14 1 5.5678 2.1950 3.2110 15 6 4.1721 2.6414 4.7748 16 7 3.0894 2.2279 5.3986 17 14 5.1668 4.0609 5.4712 18 1 5.2119 5.1665 4.4808 19 1 4.5312 4.5432 6.7236 20 1 6.5483 3.6010 5.7630 21 6 4.1235 -0.1726 2.5966 22 6 5.3903 -0.1664 1.7041 23 6 6.0276 -1.5507 1.9438 24 6 5.5247 -2.0359 3.3148 25 6 4.5994 -0.9293 3.8616 26 1 -0.3633 0.4364 -0.9304 27 1 -0.3634 -1.0239 0.0874 28 1 -0.3633 0.5876 0.8431 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.0409 4.4982 -1.8085 32 1 2.3534 4.5443 -2.3727 33 1 2.8405 5.4888 -0.9449 34 1 3.8458 4.0865 2.4364 35 1 3.9593 5.1517 1.0148 36 1 1.4924 4.6868 2.7490 37 1 2.4676 6.1734 2.6664 38 1 1.5111 5.6571 1.2569 39 1 1.6627 0.8573 2.6468 40 1 2.0892 2.4905 3.2114 41 1 2.7674 2.7053 6.1792 42 1 3.3103 -0.7096 2.1083 43 1 6.0715 0.6260 2.0143 44 1 5.1184 -0.0481 0.6552 45 1 7.1141 -1.4648 1.9537 46 1 5.7153 -2.2456 1.1642 47 1 4.9676 -2.9657 3.2004 48 1 6.3673 -2.1863 3.9897 49 1 3.7502 -1.3669 4.3863 50 1 5.1523 -0.2617 4.5225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093563464.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:10 Heat of formation + Delta-G solvation = 64.498308 kcal Electronic energy + Delta-G solvation = -27529.930200 eV Core-core repulsion = 24172.159323 eV Total energy + Delta-G solvation = -3357.770877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68913 -37.46581 -34.66912 -34.43192 -32.72019 -31.45672 -30.94959 -28.83532 -27.70914 -26.97014 -26.24614 -24.86493 -23.07976 -22.96246 -21.83286 -19.43313 -19.28702 -18.76962 -18.47308 -16.30218 -15.67469 -15.26105 -15.05296 -14.68972 -14.30146 -14.04223 -13.89804 -13.60077 -13.35083 -13.12427 -12.70445 -12.63724 -12.57584 -12.38141 -11.98573 -11.88910 -11.65757 -11.39360 -11.20727 -11.07147 -10.91034 -10.83754 -10.80989 -10.58631 -10.48557 -10.37462 -10.33711 -10.15842 -9.96885 -9.92458 -9.60264 -9.45900 -9.27965 -8.40342 -8.37695 -7.43476 -6.26769 -5.65709 -3.51756 2.55327 3.10084 3.31961 3.39189 3.41263 3.54220 4.47239 4.92746 5.22772 5.33664 5.35420 5.38543 5.44865 5.47554 5.53843 5.54687 5.59572 5.62775 5.74206 5.85158 5.93556 5.97045 5.99986 6.12996 6.18557 6.20546 6.31147 6.35698 6.38000 6.45212 6.53478 6.55130 6.56358 6.64738 6.71175 6.72993 6.78115 6.81690 6.95671 7.00133 7.19895 7.26894 7.31481 7.45242 7.55775 7.59993 7.79095 7.88171 8.46312 8.72047 9.32833 9.83660 10.57908 11.22908 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.007927 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.826443 B = 3531.257265 C = 5201.172333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C 0.078 3.922 4 N -0.318 5.318 5 N -0.388 5.388 6 C 0.109 3.891 7 C 0.097 3.903 8 C -0.069 4.069 9 C -0.139 4.139 10 C -0.219 4.219 11 C 0.232 3.768 12 N -0.565 5.565 13 C -0.256 4.256 14 H 0.048 0.952 15 C 0.035 3.965 16 N -0.874 5.874 17 Si 0.876 3.124 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.179 3.821 22 C -0.133 4.133 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.124 4.124 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.254 0.746 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.043 0.957 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.047 0.953 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.673 0.237 -8.398 8.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.088 4.088 4 N -0.140 5.140 5 N -0.171 5.171 6 C -0.033 4.033 7 C -0.029 4.029 8 C -0.108 4.108 9 C -0.197 4.197 10 C -0.232 4.232 11 C 0.105 3.895 12 N -0.283 5.283 13 C -0.386 4.386 14 H 0.065 0.935 15 C -0.168 4.168 16 N -0.514 5.514 17 Si 0.705 3.295 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.071 3.929 22 C -0.172 4.172 23 C -0.158 4.158 24 C -0.162 4.162 25 C -0.163 4.163 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.821 0.460 -9.525 9.709 hybrid contribution 0.781 0.926 1.073 1.618 sum -1.040 1.386 -8.452 8.628 Atomic orbital electron populations 1.21678 0.94980 1.01306 1.01946 1.19920 0.95521 0.89747 1.02835 1.22049 0.99448 0.96255 0.91033 1.77077 1.22734 0.91248 1.22955 1.48165 1.52888 1.11156 1.04899 1.21596 1.01174 0.85925 0.94598 1.20767 1.01064 0.97672 0.83378 1.20373 0.97789 0.93212 0.99430 1.21656 0.98039 0.99592 1.00413 1.21131 1.09800 0.92898 0.99344 1.19052 0.87000 0.97345 0.86066 1.43546 1.13329 1.07347 1.64088 1.18617 0.96832 1.22509 1.00664 0.93501 1.25524 0.97186 0.99185 0.94909 1.70048 1.24304 1.37706 1.19301 0.86848 0.80583 0.83527 0.78561 1.20493 1.21617 1.20620 1.21335 0.92940 0.86548 0.92033 1.22715 0.99968 0.95524 0.99024 1.22046 0.99170 0.97761 0.96839 1.22097 0.99073 0.98585 0.96405 1.22621 0.97920 0.96079 0.99669 0.93066 0.92572 0.92335 0.91459 0.89771 0.91807 0.90264 0.90275 0.86093 0.92641 0.91688 0.92690 0.94027 0.95176 0.90784 0.93611 0.93273 0.91447 0.93818 0.93316 0.93286 0.93335 0.93237 0.93419 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 37.16 0.37 -1.60 16 2 C -0.04 -0.66 6.20 -27.88 -0.17 -0.83 16 3 C 0.08 1.49 6.47 -82.41 -0.53 0.96 16 4 N -0.32 -6.16 12.58 33.67 0.42 -5.74 16 5 N -0.39 -6.94 4.01 -63.88 -0.26 -7.20 16 6 C 0.11 1.41 11.07 59.85 0.66 2.07 16 7 C 0.10 1.87 6.19 -82.26 -0.51 1.36 16 8 C -0.07 -1.25 5.70 -27.89 -0.16 -1.40 16 9 C -0.14 -2.24 9.89 37.15 0.37 -1.87 16 10 C -0.22 -4.46 5.67 -105.06 -0.60 -5.06 16 11 C 0.23 5.14 4.98 -5.19 -0.03 5.11 16 12 N -0.56 -12.92 2.33 -164.71 -0.38 -13.30 16 13 C -0.26 -6.31 5.86 -15.06 -0.09 -6.40 16 14 H 0.05 1.22 6.88 -52.49 -0.36 0.86 16 15 C 0.03 0.88 4.74 -17.43 -0.08 0.79 16 16 N -0.87 -23.22 12.41 55.49 0.69 -22.53 16 17 Si 0.88 19.99 29.58 -169.99 -5.03 14.96 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.18 3.71 3.42 -65.90 -0.23 3.49 16 22 C -0.13 -2.58 6.40 -25.03 -0.16 -2.74 16 23 C -0.12 -2.00 6.80 -25.61 -0.17 -2.17 16 24 C -0.12 -2.09 6.80 -25.61 -0.17 -2.26 16 25 C -0.12 -2.53 6.35 -25.07 -0.16 -2.69 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.39 5.51 -51.93 -0.29 1.10 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 33 H 0.08 0.87 7.58 -51.93 -0.39 0.48 16 34 H 0.12 2.57 5.89 -51.93 -0.31 2.26 16 35 H 0.05 0.88 7.55 -51.93 -0.39 0.49 16 36 H 0.06 1.15 7.85 -51.93 -0.41 0.74 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 40 H 0.07 1.80 6.32 -51.93 -0.33 1.48 16 41 H 0.25 6.63 8.32 -40.82 -0.34 6.29 16 42 H 0.05 0.99 5.97 -51.93 -0.31 0.68 16 43 H 0.07 1.44 6.69 -51.93 -0.35 1.10 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 50 H 0.08 1.86 7.12 -51.93 -0.37 1.49 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -27.60 385.71 -9.34 -36.94 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.94 Total: 4.29 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.66 Total: -13.24 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.47 Total: -48.77 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.60 -9.34 -36.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563464.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.442 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds