Wall clock time and date at job start Tue Mar 31 2020 08:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99903 * 2 1 4 4 C 1.52996 * 109.47167 * 147.61195 * 3 2 1 5 5 C 1.53009 * 109.46902 * 296.05323 * 4 3 2 6 6 C 1.52998 * 109.47357 * 56.05430 * 4 3 2 7 7 C 1.52998 * 109.47428 * 176.05416 * 4 3 2 8 8 C 1.50696 * 109.47377 * 179.97438 * 7 4 3 9 9 H 1.08004 * 120.00202 * 0.02562 * 8 7 4 10 10 C 1.37879 * 120.00108 * 179.97438 * 8 7 4 11 11 N 1.31517 * 119.99974 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00213 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46969 * 89.99835 * 12 10 8 14 14 H 1.48499 * 109.47044 * 210.00231 * 12 10 8 15 15 H 1.48501 * 109.46810 * 330.00434 * 12 10 8 16 16 C 1.46899 * 110.99637 * 236.04177 * 2 1 3 17 17 H 1.09007 * 109.70977 * 168.42145 * 16 2 1 18 18 C 1.53362 * 109.68745 * 288.96440 * 16 2 1 19 19 C 1.53101 * 109.51376 * 169.67763 * 18 16 2 20 20 C 1.53363 * 109.50944 * 289.73351 * 19 18 16 21 21 C 1.50826 * 108.38510 * 49.94106 * 20 19 18 22 22 C 1.35751 * 124.11786 * 343.42659 * 21 20 19 23 23 C 1.39294 * 107.98597 * 180.11217 * 22 21 20 24 24 N 1.31076 * 108.08066 * 359.62526 * 23 22 21 25 25 N 1.34326 * 128.03480 * 163.36712 * 21 20 19 26 26 C 1.46501 * 126.09356 * 0.16905 * 25 21 20 27 27 H 1.09007 * 109.47239 * 188.53703 * 1 2 3 28 28 H 1.09001 * 109.47254 * 308.52923 * 1 2 3 29 29 H 1.08996 * 109.47306 * 68.53218 * 1 2 3 30 30 H 1.09004 * 109.46665 * 267.60478 * 3 2 1 31 31 H 1.08997 * 109.47098 * 27.60815 * 3 2 1 32 32 H 1.08995 * 109.46738 * 64.80475 * 5 4 3 33 33 H 1.09002 * 109.47143 * 184.80194 * 5 4 3 34 34 H 1.08999 * 109.46678 * 304.80276 * 5 4 3 35 35 H 1.08994 * 109.47555 * 53.69107 * 6 4 3 36 36 H 1.09004 * 109.47311 * 173.69749 * 6 4 3 37 37 H 1.09003 * 109.46900 * 293.68834 * 6 4 3 38 38 H 1.08998 * 109.47320 * 299.99920 * 7 4 3 39 39 H 1.09005 * 109.47106 * 59.99588 * 7 4 3 40 40 H 0.96996 * 119.99919 * 180.02562 * 11 10 8 41 41 H 1.09003 * 109.46143 * 289.68485 * 18 16 2 42 42 H 1.08993 * 109.46053 * 49.67047 * 18 16 2 43 43 H 1.09007 * 109.46833 * 49.74207 * 19 18 16 44 44 H 1.08999 * 109.46887 * 169.71846 * 19 18 16 45 45 H 1.09001 * 109.68387 * 169.67062 * 20 19 18 46 46 H 1.09005 * 109.68026 * 290.17708 * 20 19 18 47 47 H 1.07995 * 125.95996 * 179.78471 * 23 22 21 48 48 H 1.09002 * 109.46683 * 89.99729 * 26 25 21 49 49 H 1.08989 * 109.47230 * 209.99995 * 26 25 21 50 50 H 1.09001 * 109.46716 * 330.00471 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.3153 1.4110 0.7727 5 6 3.0596 1.0514 2.2377 6 6 4.2933 0.4043 0.1636 7 6 3.9130 2.8170 0.6895 8 6 5.2128 2.8562 1.4511 9 1 5.5765 1.9671 1.9447 10 6 5.9383 4.0268 1.5168 11 7 5.4957 5.1094 0.9153 12 14 7.5499 4.0752 2.4602 13 1 8.6682 3.7249 1.5481 14 1 7.7640 5.4402 3.0045 15 1 7.4985 3.0989 3.5780 16 6 1.9953 -0.7661 -1.1375 17 1 3.0656 -0.5857 -1.2385 18 6 1.7424 -2.2621 -0.9143 19 6 2.0538 -3.0311 -2.2011 20 6 0.9894 -2.7126 -3.2583 21 6 0.8392 -1.2144 -3.3459 22 6 1.2883 -0.3477 -2.4025 23 6 0.9720 0.9433 -2.8191 24 7 0.3616 0.8594 -3.9760 25 7 0.2637 -0.4961 -4.3243 26 6 -0.3563 -1.0326 -5.5384 27 1 -0.3634 -1.0163 0.1526 28 1 -0.3634 0.6401 0.8039 29 1 -0.3634 0.3761 -0.9563 30 1 2.1657 1.6952 -1.0268 31 1 1.2754 2.0369 0.4762 32 1 2.7143 0.0197 2.3036 33 1 3.9834 1.1623 2.8056 34 1 2.2991 1.7161 2.6475 35 1 4.3891 0.5921 -0.9058 36 1 5.2679 0.5107 0.6400 37 1 3.9196 -0.6072 0.3228 38 1 4.0952 3.0732 -0.3542 39 1 3.2163 3.5343 1.1234 40 1 6.0063 5.9328 0.9612 41 1 2.3847 -2.6232 -0.1110 42 1 0.6984 -2.4172 -0.6422 43 1 3.0348 -2.7351 -2.5728 44 1 2.0516 -4.1013 -1.9943 45 1 1.3024 -3.1074 -4.2249 46 1 0.0390 -3.1612 -2.9691 47 1 1.1936 1.8546 -2.2837 48 1 -1.4128 -1.2253 -5.3520 49 1 -0.2560 -0.3094 -6.3475 50 1 0.1387 -1.9625 -5.8186 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093864443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:59 Heat of formation + Delta-G solvation = 76.309090 kcal Electronic energy + Delta-G solvation = -26907.372839 eV Core-core repulsion = 23550.114115 eV Total energy + Delta-G solvation = -3357.258724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70878 -38.50686 -36.26769 -34.69678 -33.10065 -32.07369 -29.70596 -29.10420 -27.33098 -26.83478 -26.30309 -26.04001 -24.56518 -22.95584 -21.87434 -21.21313 -20.59368 -18.51823 -17.83856 -16.75757 -16.07082 -15.94130 -15.22265 -14.81278 -14.70302 -14.37904 -14.22202 -14.03299 -13.44391 -13.29809 -13.03474 -13.01879 -12.87232 -12.65252 -12.44390 -12.27507 -11.93092 -11.79631 -11.75173 -11.28381 -11.11184 -10.98554 -10.85201 -10.67774 -10.63542 -10.44478 -10.39303 -10.25537 -10.23257 -9.92172 -9.48136 -9.23559 -8.88177 -8.76888 -8.24555 -8.17211 -7.78129 -5.89331 -3.88733 1.85361 2.46658 2.85122 3.37896 3.44443 3.47447 4.29883 4.41511 4.41761 4.55404 4.73346 4.85070 4.95512 5.07545 5.09269 5.16446 5.30055 5.40098 5.46543 5.49717 5.55348 5.60065 5.68231 5.75828 5.82996 5.94372 5.98052 6.02480 6.13154 6.16161 6.23849 6.31535 6.35610 6.44945 6.47467 6.69817 6.72160 6.81097 6.91883 6.95327 7.02538 7.33319 7.34990 7.39496 7.54055 7.63307 7.75076 7.80155 7.95876 8.11919 8.57168 9.16888 9.73571 11.22376 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.003711 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.794419 B = 7542.709327 C = 7939.821884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.520 5.520 3 C 0.057 3.943 4 C -0.050 4.050 5 C -0.116 4.116 6 C -0.128 4.128 7 C 0.032 3.968 8 C -0.504 4.504 9 H 0.059 0.941 10 C 0.054 3.946 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.283 1.283 14 H -0.289 1.289 15 H -0.274 1.274 16 C 0.145 3.855 17 H 0.107 0.893 18 C -0.109 4.109 19 C -0.113 4.113 20 C -0.052 4.052 21 C 0.081 3.919 22 C -0.252 4.252 23 C 0.056 3.944 24 N -0.303 5.303 25 N -0.374 5.374 26 C 0.103 3.897 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.012 0.988 39 H 0.013 0.987 40 H 0.258 0.742 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.186 0.814 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 -17.793 -9.475 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.241 5.241 3 C -0.070 4.070 4 C -0.050 4.050 5 C -0.174 4.174 6 C -0.185 4.185 7 C -0.005 4.005 8 C -0.542 4.542 9 H 0.077 0.923 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.199 1.199 16 C 0.035 3.965 17 H 0.125 0.875 18 C -0.146 4.146 19 C -0.151 4.151 20 C -0.091 4.091 21 C -0.047 4.047 22 C -0.265 4.265 23 C -0.128 4.128 24 N -0.124 5.124 25 N -0.156 5.156 26 C -0.039 4.039 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.031 0.969 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.202 0.798 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.426 -17.222 -10.146 23.536 hybrid contribution 0.859 0.356 0.178 0.947 sum -11.567 -16.865 -9.968 22.751 Atomic orbital electron populations 1.22420 0.88751 1.01201 1.00035 1.62228 1.06665 1.14900 1.40315 1.22535 0.97797 0.87467 0.99249 1.20539 0.91945 0.98207 0.94351 1.21612 1.00646 0.99037 0.96055 1.21905 1.00082 0.97527 0.99010 1.19131 0.95273 0.89338 0.96784 1.21252 1.05495 0.95764 1.31684 0.92256 1.25010 0.97733 0.95932 0.95928 1.69969 1.38740 1.00896 1.44218 0.86695 0.84480 0.77133 0.80296 1.20883 1.21463 1.19918 1.20693 0.99504 0.92722 0.83566 0.87516 1.21605 1.02157 0.94091 0.96792 1.21551 0.98411 1.00196 0.94953 1.20321 1.00610 0.87818 1.00387 1.20910 0.98379 0.95129 0.90329 1.20761 1.12076 0.92147 1.01472 1.23923 0.97120 0.98695 0.93083 1.77555 1.24395 0.93927 1.16512 1.48208 1.45595 1.04571 1.17259 1.21764 0.97927 0.99530 0.84658 0.92388 0.92132 0.95421 0.93978 0.92014 0.93938 0.92586 0.94692 0.94454 0.92136 0.93681 0.96981 0.96877 0.93259 0.90751 0.91836 0.91239 0.90955 0.90751 0.90175 0.79783 0.91075 0.89460 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.85 60.06 0.53 0.86 16 2 N -0.52 -7.63 3.80 -235.98 -0.90 -8.52 16 3 C 0.06 0.98 3.69 -3.83 -0.01 0.97 16 4 C -0.05 -0.99 0.60 -154.51 -0.09 -1.09 16 5 C -0.12 -2.26 8.12 37.16 0.30 -1.96 16 6 C -0.13 -2.42 6.65 37.16 0.25 -2.17 16 7 C 0.03 0.81 4.04 -27.89 -0.11 0.70 16 8 C -0.50 -13.83 7.50 -34.44 -0.26 -14.09 16 9 H 0.06 1.59 5.72 -52.48 -0.30 1.29 16 10 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 12 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.14 1.96 1.61 -68.61 -0.11 1.85 16 17 H 0.11 1.62 4.36 -51.93 -0.23 1.40 16 18 C -0.11 -1.18 5.38 -26.49 -0.14 -1.32 16 19 C -0.11 -0.98 5.90 -26.49 -0.16 -1.13 16 20 C -0.05 -0.44 5.90 -27.63 -0.16 -0.60 16 21 C 0.08 0.98 6.73 -82.33 -0.55 0.43 16 22 C -0.25 -3.52 4.14 -105.05 -0.44 -3.95 16 23 C 0.06 0.88 9.37 -17.48 -0.16 0.72 16 24 N -0.30 -4.74 12.59 30.54 0.38 -4.36 16 25 N -0.37 -4.70 4.00 -63.88 -0.26 -4.96 16 26 C 0.10 0.79 11.32 59.85 0.68 1.47 16 27 H 0.06 0.70 6.68 -51.92 -0.35 0.36 16 28 H 0.06 0.80 7.83 -51.93 -0.41 0.39 16 29 H 0.03 0.39 5.56 -51.93 -0.29 0.10 16 30 H 0.04 0.75 4.65 -51.93 -0.24 0.51 16 31 H 0.06 1.08 7.55 -51.93 -0.39 0.69 16 32 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 33 H 0.06 1.18 6.47 -51.93 -0.34 0.84 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.70 7.21 -51.93 -0.37 0.32 16 36 H 0.06 1.25 6.44 -51.93 -0.33 0.91 16 37 H 0.04 0.74 6.44 -51.93 -0.33 0.41 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 43 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.50 7.76 -51.93 -0.40 0.10 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.19 2.92 5.75 -52.49 -0.30 2.62 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.09 0.64 8.14 -51.94 -0.42 0.22 16 50 H 0.08 0.43 7.57 -51.93 -0.39 0.04 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -31.82 365.70 -8.45 -40.26 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.36 Total: -0.45 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.54 Total: -17.87 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.03 Total: -44.21 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.82 -8.45 -40.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093864443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.570 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds