Wall clock time and date at job start Tue Mar 31 2020 08:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34952 * 126.03466 * 2 1 4 4 C 1.35321 * 107.74304 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.03434 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47198 * 89.99858 * 5 4 3 7 7 H 1.08998 * 110.35581 * 307.13899 * 6 5 4 8 8 C 1.54597 * 110.30826 * 69.28029 * 6 5 4 9 9 C 1.54940 * 102.92213 * 140.87009 * 8 6 5 10 10 N 1.48528 * 103.22627 * 322.58830 * 9 8 6 11 11 C 1.46907 * 111.00010 * 159.71776 * 10 9 8 12 12 C 1.53002 * 109.47074 * 58.11066 * 11 10 9 13 13 C 1.52996 * 109.47099 * 43.99430 * 12 11 10 14 14 C 1.53001 * 109.46924 * 283.99801 * 12 11 10 15 15 C 1.52995 * 109.47186 * 163.99684 * 12 11 10 16 16 C 1.50698 * 109.46953 * 179.97438 * 15 12 11 17 17 H 1.08002 * 120.00270 * 0.02562 * 16 15 12 18 18 C 1.37884 * 120.00063 * 179.72167 * 16 15 12 19 19 N 1.31508 * 120.00347 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99624 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47445 * 89.99923 * 20 18 16 22 22 H 1.48508 * 109.46998 * 209.99686 * 20 18 16 23 23 H 1.48503 * 109.47397 * 329.99692 * 20 18 16 24 24 C 1.47898 * 105.82253 * 39.20877 * 10 9 8 25 25 C 1.39861 * 107.92094 * 0.26042 * 4 3 2 26 26 N 1.30840 * 108.20249 * 359.55703 * 25 4 3 27 27 H 1.09003 * 109.47391 * 90.00090 * 1 2 3 28 28 H 1.09011 * 109.46942 * 210.00051 * 1 2 3 29 29 H 1.09002 * 109.47485 * 329.99492 * 1 2 3 30 30 H 1.07999 * 126.12316 * 359.97438 * 3 2 1 31 31 H 1.08994 * 109.47180 * 329.99734 * 5 4 3 32 32 H 1.08999 * 109.46873 * 210.00335 * 5 4 3 33 33 H 1.08998 * 110.72776 * 259.23263 * 8 6 5 34 34 H 1.09009 * 110.72530 * 22.34054 * 8 6 5 35 35 H 1.08999 * 110.66646 * 204.15310 * 9 8 6 36 36 H 1.09000 * 110.66472 * 81.02189 * 9 8 6 37 37 H 1.09000 * 109.46757 * 298.11093 * 11 10 9 38 38 H 1.08991 * 109.47372 * 178.10957 * 11 10 9 39 39 H 1.08997 * 109.47325 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.47351 * 300.00076 * 13 12 11 41 41 H 1.08999 * 109.47143 * 59.99793 * 13 12 11 42 42 H 1.09000 * 109.47148 * 317.02378 * 14 12 11 43 43 H 1.09004 * 109.47521 * 77.02867 * 14 12 11 44 44 H 1.08998 * 109.46821 * 197.02549 * 14 12 11 45 45 H 1.08997 * 109.46992 * 60.00066 * 15 12 11 46 46 H 1.08996 * 109.47035 * 299.99599 * 15 12 11 47 47 H 0.97000 * 119.99989 * 180.02562 * 19 18 16 48 48 H 1.08991 * 109.92613 * 94.02028 * 24 10 9 49 49 H 1.09001 * 109.91534 * 215.32070 * 24 10 9 50 50 H 1.07999 * 125.90108 * 179.73184 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5454 -0.0002 6 6 5.1825 1.8419 1.4423 7 1 4.3377 2.2378 2.0059 8 6 5.7259 0.5621 2.1182 9 6 6.9131 1.0926 2.9607 10 7 7.5018 2.1449 2.0935 11 6 8.3174 3.0799 2.8801 12 6 9.4246 2.3087 3.6013 13 6 10.0538 1.2998 2.6384 14 6 8.8314 1.5671 4.8010 15 6 10.4958 3.2877 4.0858 16 6 11.5861 2.5281 4.7967 17 1 11.5216 1.4543 4.8929 18 6 12.6690 3.2032 5.3188 19 7 13.6207 2.5403 5.9387 20 14 12.7843 5.0596 5.1455 21 1 12.1331 5.7071 6.3125 22 1 14.2122 5.4636 5.0882 23 1 12.0994 5.4839 3.8980 24 6 6.3558 2.8390 1.4671 25 6 3.5346 -0.7320 -0.0070 26 7 2.2891 -1.1327 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.9279 2.1194 -0.0004 31 1 4.5440 2.4806 -0.5134 32 1 5.5819 1.0347 -0.5147 33 1 4.9678 0.1131 2.7598 34 1 6.0692 -0.1530 1.3705 35 1 7.6367 0.2992 3.1481 36 1 6.5584 1.5207 3.8983 37 1 7.6876 3.5827 3.6140 38 1 8.7636 3.8202 2.2162 39 1 10.8423 0.7500 3.1523 40 1 9.2906 0.6022 2.2933 41 1 10.4763 1.8280 1.7837 42 1 8.1343 2.2216 5.3242 43 1 8.3046 0.6780 4.4543 44 1 9.6327 1.2734 5.4790 45 1 10.0476 4.0064 4.7718 46 1 10.9185 3.8159 3.2312 47 1 14.3823 3.0153 6.3063 48 1 6.0857 3.7157 2.0557 49 1 6.6123 3.1358 0.4502 50 1 4.4053 -1.3709 -0.0131 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093870672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:35 Heat of formation + Delta-G solvation = 78.783993 kcal Electronic energy + Delta-G solvation = -25421.219679 eV Core-core repulsion = 22064.068276 eV Total energy + Delta-G solvation = -3357.151404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44591 -39.43659 -36.58033 -34.08563 -32.82086 -31.99854 -30.40770 -29.36618 -27.93590 -27.09042 -26.34718 -25.59305 -24.57718 -22.15410 -21.45238 -20.78080 -20.50829 -19.77905 -17.92183 -17.11822 -16.69969 -15.81152 -15.53893 -15.46206 -14.68478 -14.32506 -14.04044 -14.02008 -13.61348 -13.56937 -13.22486 -13.04895 -12.98122 -12.81912 -12.72040 -12.32331 -12.23045 -11.81338 -11.60946 -11.36280 -11.17989 -11.07924 -10.85907 -10.84724 -10.61058 -10.54802 -10.43898 -10.24020 -10.12805 -9.69383 -9.65659 -9.62236 -9.10981 -8.84481 -8.54073 -8.46099 -8.05478 -5.96601 -3.92197 1.64405 2.26818 2.59925 3.34606 3.42300 3.46375 4.20906 4.32139 4.51525 4.55023 4.68027 4.73741 4.82627 4.88111 4.89395 4.99729 5.22322 5.33395 5.36753 5.45953 5.53183 5.58759 5.64742 5.66635 5.76050 5.81686 5.84593 5.94285 6.00466 6.09593 6.14713 6.21241 6.26994 6.31152 6.40208 6.44921 6.52445 6.63117 6.70574 6.75519 6.90700 7.14356 7.19305 7.26931 7.27550 7.40457 7.44801 7.46687 7.58251 7.89537 8.63700 9.09483 9.66696 11.16484 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.040654 B = 0.002438 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.569982 B =11480.340752 C =11756.042942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.049 3.951 4 C -0.226 4.226 5 C -0.030 4.030 6 C -0.090 4.090 7 H 0.067 0.933 8 C -0.117 4.117 9 C 0.030 3.970 10 N -0.507 5.507 11 C 0.055 3.945 12 C -0.048 4.048 13 C -0.116 4.116 14 C -0.151 4.151 15 C -0.003 4.003 16 C -0.505 4.505 17 H 0.078 0.922 18 C 0.063 3.937 19 N -0.906 5.906 20 Si 0.876 3.124 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.266 1.266 24 C 0.037 3.963 25 C 0.056 3.944 26 N -0.301 5.301 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.170 0.830 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.044 0.956 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.034 0.966 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.007 0.993 46 H 0.015 0.985 47 H 0.261 0.739 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.965 -2.139 -12.664 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.096 4.096 4 C -0.237 4.237 5 C -0.069 4.069 6 C -0.109 4.109 7 H 0.085 0.915 8 C -0.155 4.155 9 C -0.098 4.098 10 N -0.231 5.231 11 C -0.073 4.073 12 C -0.048 4.048 13 C -0.174 4.174 14 C -0.208 4.208 15 C -0.041 4.041 16 C -0.543 4.543 17 H 0.096 0.904 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.704 3.296 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.191 1.191 24 C -0.091 4.091 25 C -0.130 4.130 26 N -0.122 5.122 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.187 0.813 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.094 0.906 50 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -26.415 -3.327 -12.964 29.612 hybrid contribution 0.120 2.343 0.728 2.456 sum -26.295 -0.984 -12.236 29.019 Atomic orbital electron populations 1.21817 0.74477 1.04381 1.03194 1.48429 1.06502 1.03946 1.57470 1.22317 0.91000 0.93225 1.03065 1.20142 0.94478 0.94069 1.15007 1.19972 0.93558 0.97502 0.95841 1.21995 0.96980 0.95907 0.96019 0.91452 1.22593 0.96978 0.96927 0.98975 1.23692 0.95629 0.95879 0.94555 1.64836 1.17281 1.11772 1.29192 1.22529 0.95148 0.94392 0.95230 1.20385 0.93873 0.96279 0.94257 1.21634 0.99600 0.98203 0.97916 1.22357 1.00752 0.99109 0.98537 1.19620 0.93985 0.94682 0.95824 1.21145 1.03146 0.95752 1.34261 0.90393 1.25025 0.95731 0.97900 0.95043 1.69908 1.10532 1.35683 1.38450 0.86846 0.76960 0.86866 0.78974 1.20572 1.21590 1.19104 1.22954 0.90344 0.95587 1.00260 1.23837 0.95025 0.94735 0.99428 1.77354 1.01862 1.08275 1.24741 0.90919 0.89405 0.89626 0.81264 0.91637 0.90546 0.91950 0.90838 0.88761 0.93820 0.95559 0.91335 0.92392 0.93483 0.94038 0.94713 0.93021 0.90824 0.97511 0.96685 0.92936 0.94384 0.90579 0.80133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 11.47 59.84 0.69 1.17 16 2 N -0.38 -3.39 4.01 -68.16 -0.27 -3.66 16 3 C 0.05 0.40 11.40 -17.22 -0.20 0.21 16 4 C -0.23 -2.07 5.03 -105.05 -0.53 -2.60 16 5 C -0.03 -0.26 4.86 -27.88 -0.14 -0.39 16 6 C -0.09 -0.89 2.98 -89.26 -0.27 -1.16 16 7 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 8 C -0.12 -1.27 6.02 -24.87 -0.15 -1.42 16 9 C 0.03 0.40 4.11 -1.90 -0.01 0.39 16 10 N -0.51 -7.28 4.31 -230.46 -0.99 -8.27 16 11 C 0.05 0.92 4.19 -3.82 -0.02 0.91 16 12 C -0.05 -0.93 0.53 -154.51 -0.08 -1.01 16 13 C -0.12 -2.25 7.73 37.16 0.29 -1.97 16 14 C -0.15 -2.82 7.15 37.16 0.27 -2.56 16 15 C 0.00 -0.08 3.05 -27.89 -0.09 -0.16 16 16 C -0.51 -14.04 7.96 -34.44 -0.27 -14.32 16 17 H 0.08 2.31 6.07 -52.49 -0.32 1.99 16 18 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 19 N -0.91 -27.95 13.96 55.43 0.77 -27.18 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 24 C 0.04 0.43 6.36 -2.75 -0.02 0.41 16 25 C 0.06 0.57 11.71 -17.37 -0.20 0.36 16 26 N -0.30 -3.41 12.58 30.62 0.39 -3.03 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.69 7.99 -51.93 -0.42 0.28 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.78 7.76 -51.92 -0.40 0.37 16 35 H 0.09 1.34 4.66 -51.93 -0.24 1.10 16 36 H 0.04 0.61 7.01 -51.93 -0.36 0.25 16 37 H 0.03 0.44 7.63 -51.93 -0.40 0.04 16 38 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 39 H 0.06 1.25 6.62 -51.93 -0.34 0.90 16 40 H 0.05 0.81 5.61 -51.93 -0.29 0.52 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.61 7.64 -51.93 -0.40 0.22 16 43 H 0.05 0.84 4.51 -51.93 -0.23 0.61 16 44 H 0.07 1.59 6.25 -51.93 -0.32 1.27 16 45 H 0.01 0.16 7.58 -51.93 -0.39 -0.23 16 46 H 0.01 0.36 7.18 -51.93 -0.37 -0.01 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.04 0.45 7.66 -51.93 -0.40 0.06 16 49 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 50 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -32.50 374.42 -8.64 -41.14 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.68 Total: -1.55 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -0.82 Total: -20.39 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.11 Total: -42.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.50 -8.64 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093870672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.924 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds