Wall clock time and date at job start Tue Mar 31 2020 09:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00019 * 2 1 4 4 H 1.48493 * 109.47402 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47120 * 300.00485 * 3 2 1 6 6 H 1.48501 * 109.46907 * 60.00366 * 3 2 1 7 7 C 1.38795 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00441 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00448 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47416 * 180.02562 * 10 9 7 12 12 O 1.20832 * 120.00044 * 359.97438 * 11 10 9 13 13 O 1.34255 * 120.00299 * 179.97438 * 11 10 9 14 14 C 1.35958 * 117.00000 * 179.97438 * 13 11 10 15 15 C 1.38805 * 120.06235 * 90.00599 * 14 13 11 16 16 Cl 1.73602 * 120.02967 * 359.69365 * 15 14 13 17 17 C 1.38259 * 119.93734 * 179.97438 * 15 14 13 18 18 C 1.38266 * 120.06141 * 0.02562 * 17 15 14 19 19 C 1.38249 * 120.12851 * 359.95959 * 18 17 15 20 20 C 1.38261 * 120.07021 * 0.04234 * 19 18 17 21 21 Cl 1.73596 * 120.03635 * 180.02562 * 20 19 18 22 22 H 0.96999 * 120.00711 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47208 * 59.99539 * 10 9 7 24 24 H 1.09003 * 109.47174 * 299.99539 * 10 9 7 25 25 H 1.08001 * 119.97070 * 179.97438 * 17 15 14 26 26 H 1.08001 * 119.92870 * 180.02562 * 18 17 15 27 27 H 1.08004 * 119.96669 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7957 -5.5016 -0.0011 13 8 2.8410 -6.3391 -0.0018 14 6 2.2982 -7.5856 -0.0018 15 6 2.0202 -8.2229 -1.2031 16 17 2.3578 -7.4258 -2.7080 17 6 1.4687 -9.4908 -1.2001 18 6 1.1937 -10.1236 -0.0020 19 6 1.4699 -9.4914 1.1961 20 6 2.0213 -8.2235 1.1994 21 17 2.3683 -7.4308 2.7043 22 1 -0.4851 0.8400 0.0004 23 1 3.1246 -3.7313 0.8894 24 1 3.1245 -3.7314 -0.8906 25 1 1.2518 -9.9870 -2.1346 26 1 0.7633 -11.1142 -0.0021 27 1 1.2544 -9.9883 2.1305 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192504172.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:49 Heat of formation + Delta-G solvation = -61.867148 kcal Electronic energy + Delta-G solvation = -17519.488249 eV Core-core repulsion = 14228.090055 eV Total energy + Delta-G solvation = -3291.398195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 305.967 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.25489 -39.00059 -36.94649 -36.61428 -36.45509 -32.50798 -31.01064 -30.97118 -29.33310 -25.60003 -23.73975 -23.30493 -21.25341 -18.40601 -17.95986 -17.15565 -17.08153 -16.40357 -15.15015 -15.07935 -14.86540 -14.67612 -14.23769 -14.04627 -13.23406 -12.79424 -12.75645 -12.58764 -12.51571 -12.09852 -11.36181 -11.33002 -11.23275 -11.11256 -11.10909 -10.85300 -10.84469 -10.31827 -9.93721 -9.14417 -9.04923 -9.03886 -8.39784 -6.63592 -6.29581 -4.02640 0.53507 0.63165 1.59410 2.03153 2.45475 2.49369 3.09399 3.18750 3.24966 3.29354 3.46678 4.11841 4.35105 4.54679 4.61849 4.75940 4.98831 5.06554 5.25831 5.50050 5.57935 5.64434 5.71159 5.80498 6.00943 6.09471 6.55322 7.53889 8.02202 8.28539 9.16108 10.77955 Molecular weight = 305.97amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.003966 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.133254 B = 7058.298279 C = 7794.085391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.078 0.922 9 S -0.053 6.053 10 C -0.125 4.125 11 C 0.480 3.520 12 O -0.463 6.463 13 O -0.288 6.288 14 C 0.111 3.889 15 C -0.032 4.032 16 Cl -0.038 7.038 17 C -0.096 4.096 18 C -0.096 4.096 19 C -0.096 4.096 20 C -0.032 4.032 21 Cl -0.038 7.038 22 H 0.269 0.731 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -20.854 -0.004 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.096 0.904 9 S 0.174 5.826 10 C -0.273 4.273 11 C 0.321 3.679 12 O -0.344 6.344 13 O -0.205 6.205 14 C 0.067 3.933 15 C -0.059 4.059 16 Cl -0.009 7.009 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.059 4.059 21 Cl -0.009 7.009 22 H 0.079 0.921 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.165 0.835 26 H 0.165 0.835 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.533 -20.846 -0.004 21.144 hybrid contribution 1.911 1.360 0.000 2.345 sum 5.444 -19.487 -0.004 20.233 Atomic orbital electron populations 1.70013 1.05984 1.27589 1.46593 1.25004 0.95073 0.99127 0.94300 0.86063 0.79638 0.81549 0.77961 1.19460 1.20480 1.20486 1.22876 0.95097 0.91006 1.59387 0.90433 1.85460 1.03817 0.96471 1.96898 1.23336 1.07431 0.89662 1.06863 1.23853 0.85287 0.86451 0.72275 1.90706 1.16341 1.84733 1.42663 1.84736 1.39362 1.11606 1.84804 1.17943 0.99308 0.85637 0.90450 1.21118 1.02460 0.95269 0.87089 1.98415 1.93474 1.79706 1.29265 1.21106 0.97917 0.92475 1.00027 1.21139 0.99035 1.00503 0.90757 1.21102 0.97939 0.92459 1.00027 1.21115 1.02440 0.95296 0.87079 1.98414 1.93260 1.79929 1.29256 0.92080 0.87501 0.87509 0.83544 0.83541 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.66 13.22 55.49 0.73 -24.93 15 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 15 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 15 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.54 -14.95 9.50 30.94 0.29 -14.66 15 8 H 0.08 2.05 7.80 -52.48 -0.41 1.64 15 9 S -0.05 -1.40 20.57 -107.50 -2.21 -3.62 15 10 C -0.13 -2.59 6.27 36.01 0.23 -2.36 15 11 C 0.48 9.46 7.92 36.01 0.29 9.75 15 12 O -0.46 -10.30 15.60 -18.75 -0.29 -10.59 15 13 O -0.29 -4.94 8.94 -23.70 -0.21 -5.15 15 14 C 0.11 1.68 4.90 -39.16 -0.19 1.49 15 15 C -0.03 -0.42 6.33 -39.36 -0.25 -0.67 15 16 Cl -0.04 -0.52 28.50 -51.86 -1.48 -2.00 15 17 C -0.10 -0.94 9.83 -39.56 -0.39 -1.33 15 18 C -0.10 -0.77 10.04 -39.57 -0.40 -1.17 15 19 C -0.10 -0.94 9.82 -39.57 -0.39 -1.33 15 20 C -0.03 -0.42 6.33 -39.37 -0.25 -0.67 15 21 Cl -0.04 -0.52 28.50 -51.86 -1.48 -2.00 15 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 23 H 0.11 2.04 8.14 -51.92 -0.42 1.61 15 24 H 0.11 2.04 8.14 -51.91 -0.42 1.61 15 25 H 0.15 1.03 8.06 -52.49 -0.42 0.60 15 26 H 0.15 0.65 8.06 -52.49 -0.42 0.22 15 27 H 0.15 1.03 8.06 -52.48 -0.42 0.60 15 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -32.40 299.22 -8.27 -40.66 By element: Atomic # 1 Polarization: -2.40 SS G_CDS: -1.66 Total: -4.05 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.16 Total: -8.95 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.73 Total: -24.93 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.50 Total: -15.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.21 Total: -3.62 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -2.96 Total: -3.99 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.40 -8.27 -40.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192504172.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.204 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds