Wall clock time and date at job start Tue Mar 31 2020 08:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46980 * 2 1 4 4 C 1.53000 * 109.47427 * 119.99948 * 2 1 3 5 5 N 1.46898 * 109.47481 * 175.36975 * 4 2 1 6 6 C 1.46905 * 111.00078 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.46677 * 179.97438 * 6 5 4 8 8 C 1.38289 * 119.92440 * 269.72302 * 7 6 5 9 9 C 1.38105 * 120.07219 * 179.72763 * 8 7 6 10 10 C 1.38914 * 119.92656 * 0.55157 * 9 8 7 11 11 N 1.39669 * 120.07579 * 179.74533 * 10 9 8 12 12 C 1.46501 * 119.99920 * 179.97438 * 11 10 9 13 13 C 1.46503 * 119.99984 * 359.97438 * 11 10 9 14 14 C 1.50701 * 109.46549 * 90.00096 * 13 11 10 15 15 H 1.07994 * 120.00747 * 0.02562 * 14 13 11 16 16 C 1.37885 * 119.99670 * 179.97438 * 14 13 11 17 17 N 1.31523 * 119.99700 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00002 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47428 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47446 * 120.00201 * 18 16 14 21 21 H 1.48502 * 109.47070 * 239.99782 * 18 16 14 22 22 C 1.38910 * 119.84884 * 359.72421 * 10 9 8 23 23 C 1.38106 * 119.92583 * 359.97438 * 22 10 9 24 24 N 1.46896 * 109.47426 * 239.99927 * 2 1 3 25 25 C 1.46903 * 111.00292 * 306.57098 * 24 2 1 26 26 C 1.46905 * 110.99865 * 70.52002 * 24 2 1 27 27 H 1.08996 * 109.47435 * 300.00106 * 1 2 3 28 28 H 1.09002 * 109.46980 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47424 * 60.00199 * 1 2 3 30 30 H 1.08998 * 109.47280 * 295.36783 * 4 2 1 31 31 H 1.09000 * 109.47108 * 55.36585 * 4 2 1 32 32 H 1.00893 * 111.00175 * 56.04231 * 5 4 2 33 33 H 1.08994 * 109.46719 * 299.99670 * 6 5 4 34 34 H 1.08996 * 109.46705 * 59.99647 * 6 5 4 35 35 H 1.07998 * 119.96110 * 359.97438 * 8 7 6 36 36 H 1.08000 * 120.03766 * 180.27066 * 9 8 7 37 37 H 1.09002 * 109.47428 * 90.00210 * 12 11 10 38 38 H 1.09003 * 109.46736 * 210.00219 * 12 11 10 39 39 H 1.08998 * 109.47278 * 329.99989 * 12 11 10 40 40 H 1.09000 * 109.46894 * 209.99829 * 13 11 10 41 41 H 1.09000 * 109.47070 * 330.00037 * 13 11 10 42 42 H 0.96994 * 119.99602 * 179.97438 * 17 16 14 43 43 H 1.07997 * 120.03996 * 179.97438 * 22 10 9 44 44 H 1.08006 * 119.96374 * 179.97438 * 23 22 10 45 45 H 1.09005 * 109.46844 * 59.99735 * 25 24 2 46 46 H 1.08995 * 109.47220 * 179.97438 * 25 24 2 47 47 H 1.09005 * 109.46740 * 299.99854 * 25 24 2 48 48 H 1.09003 * 109.47093 * 54.24080 * 26 24 2 49 49 H 1.09005 * 109.47006 * 174.22986 * 26 24 2 50 50 H 1.08996 * 109.47434 * 294.23636 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5047 -0.8188 1.1946 6 6 4.0310 -1.5078 2.3805 7 6 5.5330 -1.5892 2.2888 8 6 6.1290 -2.6797 1.6823 9 6 7.5051 -2.7548 1.5915 10 6 8.2909 -1.7388 2.1205 11 7 9.6829 -1.8140 2.0352 12 6 10.5101 -0.7413 2.5932 13 6 10.3159 -2.9657 1.3877 14 6 10.4932 -2.6811 -0.0815 15 1 10.1675 -1.7367 -0.4919 16 6 11.0724 -3.6260 -0.9018 17 7 11.4705 -4.7755 -0.4018 18 14 11.2928 -3.2731 -2.7228 19 1 10.7671 -1.9191 -3.0318 20 1 12.7359 -3.3349 -3.0679 21 1 10.5503 -4.2849 -3.5165 22 6 7.6891 -0.6475 2.7342 23 6 6.3123 -0.5758 2.8160 24 7 2.0197 -0.6925 -1.1994 25 6 1.4248 -2.0307 -1.3145 26 6 1.7640 0.1029 -2.4077 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 1.7461 -0.1617 2.1373 31 1 1.6105 -1.7221 1.2917 32 1 3.9242 0.0928 1.0898 33 1 3.7508 -0.9541 3.2766 34 1 3.6153 -2.5141 2.4304 35 1 5.5176 -3.4717 1.2756 36 1 7.9698 -3.6046 1.1138 37 1 10.7440 -0.9666 3.6337 38 1 11.4350 -0.6612 2.0220 39 1 9.9668 0.2021 2.5390 40 1 11.2895 -3.1484 1.8425 41 1 9.6850 -3.8456 1.5139 42 1 11.8776 -5.4404 -0.9789 43 1 8.2971 0.1439 3.1469 44 1 5.8437 0.2722 3.2934 45 1 0.3404 -1.9419 -1.3804 46 1 1.8041 -2.5211 -2.2110 47 1 1.6883 -2.6220 -0.4374 48 1 2.1874 1.0995 -2.2831 49 1 2.2260 -0.3831 -3.2671 50 1 0.6890 0.1824 -2.5697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264367484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:05 Heat of formation + Delta-G solvation = 42.351793 kcal Electronic energy + Delta-G solvation = -24944.797762 eV Core-core repulsion = 21586.066539 eV Total energy + Delta-G solvation = -3358.731222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.07839 -38.63939 -36.27076 -34.69255 -32.66748 -31.43195 -30.36270 -29.54511 -27.75632 -27.71353 -26.53681 -25.03580 -24.04767 -23.22223 -21.91104 -21.46016 -19.93554 -19.41240 -16.71994 -16.49533 -16.38149 -15.58525 -15.25640 -14.98211 -14.79370 -14.47235 -14.22727 -14.13393 -13.74528 -13.59763 -13.49182 -12.90152 -12.79619 -12.60083 -12.49758 -12.24859 -12.11978 -11.92975 -11.81426 -11.68395 -11.56853 -11.34618 -11.29098 -11.20574 -10.90382 -10.83245 -10.64777 -10.53220 -10.20824 -9.83041 -9.69104 -8.78213 -8.46753 -8.25906 -8.19469 -8.11402 -6.40860 -5.97040 -4.13007 2.19415 2.30347 3.29138 3.37187 3.42949 3.84258 4.19550 4.29135 4.45865 4.64490 4.77896 4.83635 5.10854 5.16071 5.17618 5.25676 5.28802 5.37985 5.41936 5.42400 5.45400 5.53846 5.56110 5.64310 5.69766 5.74877 5.80851 5.86000 5.91827 5.93276 5.97844 6.08163 6.14576 6.32880 6.46898 6.51429 6.71494 6.95597 7.01914 7.02383 7.08717 7.24128 7.26331 7.33476 7.45157 7.60773 7.68559 7.85778 8.20153 8.32339 8.54912 8.96654 9.53844 10.99666 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.003212 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.363855 B = 8716.559511 C =10162.994359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.081 3.919 3 H 0.078 0.922 4 C 0.068 3.932 5 N -0.665 5.665 6 C 0.116 3.884 7 C -0.169 4.169 8 C -0.049 4.049 9 C -0.188 4.188 10 C 0.241 3.759 11 N -0.617 5.617 12 C 0.099 3.901 13 C 0.249 3.751 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.223 4.223 23 C -0.069 4.069 24 N -0.517 5.517 25 C 0.024 3.976 26 C 0.023 3.977 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.069 0.931 32 H 0.340 0.660 33 H 0.022 0.978 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.263 0.737 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.022 0.978 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.550 9.080 3.859 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.028 4.028 3 H 0.096 0.904 4 C -0.062 4.062 5 N -0.296 5.296 6 C -0.012 4.012 7 C -0.172 4.172 8 C -0.068 4.068 9 C -0.211 4.211 10 C 0.134 3.866 11 N -0.323 5.323 12 C -0.045 4.045 13 C 0.129 3.871 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.246 4.246 23 C -0.088 4.088 24 N -0.239 5.239 25 C -0.124 4.124 26 C -0.126 4.126 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.040 0.960 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -18.688 8.254 3.452 20.719 hybrid contribution -0.737 0.941 -0.564 1.322 sum -19.425 9.195 2.888 21.685 Atomic orbital electron populations 1.22445 0.97666 1.02413 1.02127 1.21751 0.92013 0.98051 0.90996 0.90374 1.21984 0.89708 0.99901 0.94637 1.60368 1.03393 1.25654 1.40138 1.20649 0.91948 0.98575 0.90058 1.19163 0.93592 0.97423 1.06974 1.20626 0.93733 0.96715 0.95744 1.20892 0.93189 1.00801 1.06182 1.17944 0.84119 0.92930 0.91599 1.47085 1.01624 1.23353 1.60190 1.21458 0.95662 0.90312 0.97088 1.19283 0.92966 0.82974 0.91876 1.21630 1.39628 1.02156 0.93382 0.92181 1.24966 0.95302 0.94903 0.98945 1.69945 1.41244 1.06543 1.35780 0.86469 0.77654 0.78549 0.84987 1.19678 1.21020 1.20824 1.20501 0.94670 0.99657 1.09745 1.20487 0.92997 0.96984 0.98369 1.62065 1.57896 1.02525 1.01429 1.22403 0.96100 0.90932 1.02938 1.22409 0.98433 0.98485 0.93229 0.92142 0.91978 0.92488 0.95562 0.91274 0.84130 0.95942 0.91354 0.87093 0.85164 0.94713 0.91515 0.92736 0.95270 0.94616 0.92749 0.87070 0.87880 0.95996 0.91745 0.90926 0.91692 0.91415 0.96166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 8.43 37.15 0.31 -1.09 16 2 C 0.08 0.75 2.54 -67.72 -0.17 0.58 16 3 H 0.08 0.72 7.98 -51.93 -0.41 0.31 16 4 C 0.07 0.67 4.87 -3.82 -0.02 0.65 16 5 N -0.66 -8.18 6.22 -115.06 -0.72 -8.90 16 6 C 0.12 1.49 5.81 -4.97 -0.03 1.46 16 7 C -0.17 -2.67 5.40 -104.59 -0.56 -3.24 16 8 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 9 C -0.19 -3.93 9.21 -39.38 -0.36 -4.29 16 10 C 0.24 5.00 6.55 -83.79 -0.55 4.45 16 11 N -0.62 -13.50 2.99 -181.00 -0.54 -14.05 16 12 C 0.10 1.78 10.19 59.85 0.61 2.39 16 13 C 0.25 6.35 4.91 -5.19 -0.03 6.32 16 14 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.06 1.70 5.46 -17.81 -0.10 1.60 16 17 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 18 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.22 -3.96 9.21 -39.38 -0.36 -4.32 16 23 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 24 N -0.52 -5.56 4.70 -243.17 -1.14 -6.70 16 25 C 0.02 0.24 8.77 60.07 0.53 0.77 16 26 C 0.02 0.21 9.29 60.07 0.56 0.77 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.47 6.33 -51.93 -0.33 0.14 16 29 H 0.06 0.42 6.83 -51.93 -0.35 0.07 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.69 6.79 -51.93 -0.35 0.34 16 32 H 0.34 4.27 8.72 -39.30 -0.34 3.92 16 33 H 0.02 0.26 8.08 -51.93 -0.42 -0.16 16 34 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.13 3.00 6.14 -52.49 -0.32 2.68 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 40 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 44 H 0.10 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.02 0.19 6.21 -51.93 -0.32 -0.13 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.77 6.59 -51.93 -0.34 0.42 16 48 H 0.06 0.58 8.01 -51.93 -0.42 0.16 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.02 0.17 6.89 -51.93 -0.36 -0.19 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -29.49 391.74 -10.75 -40.24 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.70 Total: 3.81 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.26 Total: -11.71 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -1.66 Total: -54.90 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.49 -10.75 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264367484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.593 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds