Wall clock time and date at job start Tue Mar 31 2020 08:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47680 * 2 1 4 4 C 1.53001 * 109.47133 * 239.99844 * 2 1 3 5 5 N 1.46903 * 109.47171 * 184.01591 * 4 2 1 6 6 C 1.46897 * 110.99752 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47032 * 179.97438 * 6 5 4 8 8 C 1.38285 * 119.92421 * 269.72855 * 7 6 5 9 9 C 1.38114 * 120.07429 * 179.72534 * 8 7 6 10 10 C 1.38908 * 119.92259 * 0.54526 * 9 8 7 11 11 N 1.39677 * 120.07607 * 179.75352 * 10 9 8 12 12 C 1.46498 * 120.00098 * 179.97438 * 11 10 9 13 13 C 1.46496 * 119.99791 * 359.97060 * 11 10 9 14 14 C 1.50700 * 109.47107 * 90.00292 * 13 11 10 15 15 H 1.07999 * 120.00048 * 0.02562 * 14 13 11 16 16 C 1.37878 * 119.99944 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99822 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00188 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47272 * 89.99981 * 18 16 14 20 20 H 1.48504 * 109.46887 * 209.99798 * 18 16 14 21 21 H 1.48496 * 109.47051 * 330.00008 * 18 16 14 22 22 C 1.38913 * 119.85219 * 359.72216 * 10 9 8 23 23 C 1.38109 * 119.92410 * 0.02562 * 22 10 9 24 24 N 1.46904 * 109.46991 * 119.99783 * 2 1 3 25 25 C 1.46900 * 111.00045 * 291.76852 * 24 2 1 26 26 C 1.46893 * 111.00292 * 55.72861 * 24 2 1 27 27 H 1.09000 * 109.47126 * 60.00299 * 1 2 3 28 28 H 1.09001 * 109.47406 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46829 * 299.99988 * 1 2 3 30 30 H 1.09001 * 109.47182 * 64.01210 * 4 2 1 31 31 H 1.08997 * 109.46857 * 304.01020 * 4 2 1 32 32 H 1.00903 * 110.99456 * 303.94814 * 5 4 2 33 33 H 1.09001 * 109.47035 * 299.99599 * 6 5 4 34 34 H 1.08995 * 109.47338 * 59.99611 * 6 5 4 35 35 H 1.08005 * 119.96605 * 359.97296 * 8 7 6 36 36 H 1.07995 * 120.03713 * 180.27123 * 9 8 7 37 37 H 1.08997 * 109.47170 * 89.99649 * 12 11 10 38 38 H 1.09001 * 109.47083 * 209.99558 * 12 11 10 39 39 H 1.08997 * 109.46869 * 329.99248 * 12 11 10 40 40 H 1.08997 * 109.47609 * 210.00410 * 13 11 10 41 41 H 1.09001 * 109.47509 * 330.00453 * 13 11 10 42 42 H 0.96999 * 119.99870 * 180.02562 * 17 16 14 43 43 H 1.08004 * 120.03877 * 179.97438 * 22 10 9 44 44 H 1.08003 * 119.95914 * 179.97438 * 23 22 10 45 45 H 1.09004 * 109.46997 * 65.77275 * 25 24 2 46 46 H 1.09000 * 109.47248 * 185.76622 * 25 24 2 47 47 H 1.09000 * 109.47731 * 305.77371 * 25 24 2 48 48 H 1.09002 * 109.47193 * 59.99378 * 26 24 2 49 49 H 1.09001 * 109.47724 * 179.97438 * 26 24 2 50 50 H 1.09007 * 109.47142 * 300.00293 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5058 -0.8059 -1.2017 6 6 4.0321 -1.4935 -2.3883 7 6 5.5353 -1.5604 -2.3047 8 6 6.3022 -0.5442 -2.8446 9 6 7.6799 -0.5996 -2.7647 10 6 8.2954 -1.6832 -2.1510 11 7 9.6886 -1.7450 -2.0730 12 6 10.3360 -2.8883 -1.4249 13 6 10.5024 -0.6665 -2.6392 14 6 10.7421 0.3867 -1.5884 15 1 10.3298 0.2647 -0.5977 16 6 11.4887 1.5056 -1.8914 17 7 11.6983 2.4245 -0.9741 18 14 12.2024 1.7163 -3.6048 19 1 11.2284 2.4393 -4.4613 20 1 13.4638 2.4958 -3.5231 21 1 12.4826 0.3814 -4.1919 22 6 7.5222 -2.7050 -1.6146 23 6 6.1448 -2.6407 -1.6934 24 7 2.0196 -0.6925 1.1995 25 6 1.7156 0.0776 2.4129 26 6 1.4671 -2.0508 1.2857 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.7366 -0.1677 -2.1378 31 1 1.6192 -1.7261 -1.2858 32 1 3.9178 0.1099 -1.1024 33 1 3.6251 -2.5036 -2.4333 34 1 3.7425 -0.9448 -3.2845 35 1 5.8232 0.2957 -3.3259 36 1 8.2781 0.1965 -3.1827 37 1 10.5250 -3.6661 -2.1647 38 1 11.2803 -2.5691 -0.9839 39 1 9.6843 -3.2801 -0.6440 40 1 11.4581 -1.0698 -2.9740 41 1 9.9790 -0.2224 -3.4859 42 1 12.2232 3.2119 -1.1874 43 1 7.9976 -3.5491 -1.1371 44 1 5.5431 -3.4350 -1.2768 45 1 0.6357 0.1199 2.5554 46 1 2.1771 -0.4048 3.2746 47 1 2.1082 1.0892 2.3093 48 1 1.7660 -2.6212 0.4063 49 1 1.8460 -2.5411 2.1825 50 1 0.3793 -1.9982 1.3320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264367486.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:08 Heat of formation + Delta-G solvation = 47.166043 kcal Electronic energy + Delta-G solvation = -24919.571319 eV Core-core repulsion = 21561.048858 eV Total energy + Delta-G solvation = -3358.522461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.13734 -38.67751 -36.35173 -34.74231 -32.60795 -31.45555 -30.48192 -29.65423 -28.28993 -27.74653 -26.57560 -25.10864 -24.02582 -23.09469 -22.00873 -21.28442 -19.93762 -19.42579 -16.91723 -16.76141 -16.48903 -15.60478 -15.31016 -15.00688 -14.71171 -14.53807 -14.37735 -14.15342 -13.76057 -13.60369 -13.40465 -13.04227 -12.87080 -12.62072 -12.51950 -12.41842 -12.25487 -11.97058 -11.85366 -11.74582 -11.58202 -11.56343 -11.41450 -11.28763 -10.95982 -10.85111 -10.59443 -10.56891 -10.22233 -10.01003 -9.55799 -8.86316 -8.63708 -8.28148 -8.25236 -8.13716 -6.36207 -6.12221 -4.12008 2.12876 2.24572 3.22792 3.30656 3.31455 3.83408 4.09169 4.26269 4.34038 4.61881 4.75691 4.83453 5.09850 5.15642 5.16716 5.18084 5.29135 5.31494 5.40133 5.41388 5.45471 5.52775 5.54608 5.63306 5.67224 5.73854 5.80723 5.83289 5.83783 5.91405 5.95662 6.00018 6.06037 6.28012 6.37134 6.42388 6.60707 6.77972 6.79243 6.95178 7.01200 7.06929 7.10740 7.24818 7.30658 7.55491 7.58692 7.60227 8.08875 8.38690 8.54514 8.96207 9.47679 11.00839 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.016974 B = 0.002828 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.210776 B = 9899.576210 C =10378.846311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.081 3.919 3 H 0.080 0.920 4 C 0.067 3.933 5 N -0.666 5.666 6 C 0.115 3.885 7 C -0.166 4.166 8 C -0.067 4.067 9 C -0.188 4.188 10 C 0.240 3.760 11 N -0.612 5.612 12 C 0.099 3.901 13 C 0.221 3.779 14 C -0.533 4.533 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.872 3.128 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.266 1.266 22 C -0.218 4.218 23 C -0.049 4.049 24 N -0.517 5.517 25 C 0.022 3.978 26 C 0.025 3.975 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.343 0.657 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.035 0.965 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.020 0.980 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.378 -8.365 -0.253 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.029 4.029 3 H 0.098 0.902 4 C -0.063 4.063 5 N -0.297 5.297 6 C -0.013 4.013 7 C -0.169 4.169 8 C -0.087 4.087 9 C -0.210 4.210 10 C 0.134 3.866 11 N -0.318 5.318 12 C -0.045 4.045 13 C 0.099 3.901 14 C -0.572 4.572 15 H 0.095 0.905 16 C -0.131 4.131 17 N -0.533 5.533 18 Si 0.699 3.301 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.241 4.241 23 C -0.068 4.068 24 N -0.240 5.240 25 C -0.126 4.126 26 C -0.123 4.123 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.039 0.961 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -19.505 -8.807 0.143 21.402 hybrid contribution -0.493 1.151 -1.273 1.786 sum -19.998 -7.656 -1.130 21.443 Atomic orbital electron populations 1.22446 0.97669 1.02314 1.02230 1.21760 0.91999 0.98254 0.90841 0.90184 1.21994 0.89650 0.99874 0.94779 1.60410 1.03657 1.25659 1.39983 1.20650 0.91807 0.98546 0.90314 1.19182 0.93709 0.97375 1.06621 1.20645 0.93178 0.96897 0.97965 1.20766 0.94422 0.99458 1.06400 1.17906 0.83721 0.93018 0.91929 1.46694 1.02004 1.22457 1.60665 1.21485 0.98347 0.88321 0.96352 1.19644 0.90023 0.85910 0.94474 1.21497 1.33156 1.03250 0.99304 0.90515 1.24904 0.95718 0.95559 0.96871 1.69909 1.39805 1.10040 1.33557 0.86915 0.79220 0.78787 0.85197 1.19941 1.20984 1.19028 1.20571 0.93757 1.00716 1.09094 1.20490 0.93358 0.96848 0.96121 1.62066 1.58369 1.02188 1.01328 1.22413 0.98253 0.98878 0.93069 1.22392 0.96421 0.90670 1.02856 0.92085 0.92102 0.92416 0.95445 0.91317 0.83837 0.91447 0.95765 0.87469 0.85556 0.94609 0.91328 0.92346 0.95504 0.95549 0.92543 0.86845 0.87232 0.96113 0.91469 0.91568 0.90934 0.91863 0.96052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 8.47 37.16 0.31 -1.10 16 2 C 0.08 0.75 2.55 -67.71 -0.17 0.58 16 3 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 4 C 0.07 0.66 4.82 -3.82 -0.02 0.64 16 5 N -0.67 -8.17 6.24 -115.06 -0.72 -8.89 16 6 C 0.12 1.45 5.81 -4.98 -0.03 1.42 16 7 C -0.17 -2.58 5.39 -104.59 -0.56 -3.15 16 8 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 9 C -0.19 -3.77 9.21 -39.38 -0.36 -4.14 16 10 C 0.24 4.87 6.55 -83.79 -0.55 4.32 16 11 N -0.61 -12.99 2.99 -181.01 -0.54 -13.53 16 12 C 0.10 1.73 10.19 59.85 0.61 2.34 16 13 C 0.22 5.25 3.98 -5.20 -0.02 5.23 16 14 C -0.53 -14.95 9.94 -34.44 -0.34 -15.30 16 15 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 18 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 22 C -0.22 -3.86 9.21 -39.38 -0.36 -4.22 16 23 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 24 N -0.52 -5.42 4.73 -243.17 -1.15 -6.57 16 25 C 0.02 0.20 9.24 60.06 0.56 0.76 16 26 C 0.02 0.23 8.80 60.06 0.53 0.76 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.45 6.34 -51.93 -0.33 0.12 16 29 H 0.06 0.43 6.75 -51.93 -0.35 0.08 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.66 6.70 -51.93 -0.35 0.32 16 32 H 0.34 4.49 8.72 -39.29 -0.34 4.15 16 33 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 35 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.13 2.72 6.14 -52.49 -0.32 2.40 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 39 H 0.06 0.92 6.20 -51.93 -0.32 0.60 16 40 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 41 H 0.03 0.63 5.63 -51.93 -0.29 0.33 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.11 1.81 6.14 -52.48 -0.32 1.49 16 44 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 45 H 0.02 0.17 6.82 -51.93 -0.35 -0.19 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 48 H 0.07 0.71 6.50 -51.93 -0.34 0.37 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.02 0.17 6.23 -51.93 -0.32 -0.15 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -30.48 387.94 -10.39 -40.87 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.66 Total: 5.10 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.28 Total: -12.61 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -1.64 Total: -55.36 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.48 -10.39 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264367486.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.039 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds