Wall clock time and date at job start Tue Mar 31 2020 08:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47127 * 2 1 4 4 C 1.53003 * 109.47222 * 119.99568 * 2 1 3 5 5 N 1.46898 * 109.47327 * 175.68711 * 4 2 1 6 6 C 1.46892 * 111.00155 * 75.67795 * 5 4 2 7 7 C 1.46903 * 111.00141 * 199.63749 * 5 4 2 8 8 N 1.46891 * 109.47140 * 239.99556 * 2 1 3 9 9 C 1.46907 * 111.00136 * 85.00020 * 8 2 1 10 10 C 1.50691 * 109.47332 * 179.97438 * 9 8 2 11 11 C 1.38291 * 119.92542 * 269.72431 * 10 9 8 12 12 C 1.38109 * 120.07504 * 179.72682 * 11 10 9 13 13 C 1.38912 * 119.92013 * 0.54994 * 12 11 10 14 14 N 1.39672 * 120.07114 * 179.75198 * 13 12 11 15 15 C 1.46504 * 120.00010 * 179.97438 * 14 13 12 16 16 C 1.46502 * 120.00301 * 359.97210 * 14 13 12 17 17 C 1.50705 * 109.46945 * 90.00083 * 16 14 13 18 18 H 1.07998 * 120.00117 * 0.02562 * 17 16 14 19 19 C 1.37870 * 119.99935 * 179.97438 * 17 16 14 20 20 N 1.31518 * 119.99898 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00300 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46817 * 89.99571 * 21 19 17 23 23 H 1.48494 * 109.47176 * 209.99807 * 21 19 17 24 24 H 1.48500 * 109.46721 * 329.99913 * 21 19 17 25 25 C 1.38916 * 119.85365 * 359.72429 * 13 12 11 26 26 C 1.38098 * 119.92506 * 0.02562 * 25 13 12 27 27 H 1.08999 * 109.47038 * 59.99811 * 1 2 3 28 28 H 1.09004 * 109.47084 * 300.00178 * 1 2 3 29 29 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47210 * 295.68753 * 4 2 1 31 31 H 1.09007 * 109.46695 * 55.68437 * 4 2 1 32 32 H 1.09002 * 109.47309 * 60.00161 * 6 5 4 33 33 H 1.08999 * 109.47544 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47531 * 300.00368 * 6 5 4 35 35 H 1.09003 * 109.46926 * 64.91552 * 7 5 4 36 36 H 1.08998 * 109.47264 * 184.92099 * 7 5 4 37 37 H 1.09005 * 109.46623 * 304.92148 * 7 5 4 38 38 H 1.00902 * 111.00383 * 321.05016 * 8 2 1 39 39 H 1.08997 * 109.46932 * 300.00656 * 9 8 2 40 40 H 1.09000 * 109.47057 * 59.99772 * 9 8 2 41 41 H 1.08000 * 119.96402 * 359.97438 * 11 10 9 42 42 H 1.07998 * 120.03841 * 180.27808 * 12 11 10 43 43 H 1.09001 * 109.47454 * 89.99353 * 15 14 13 44 44 H 1.08998 * 109.47171 * 209.99980 * 15 14 13 45 45 H 1.09003 * 109.47142 * 329.99404 * 15 14 13 46 46 H 1.08994 * 109.47321 * 210.00256 * 16 14 13 47 47 H 1.09001 * 109.47294 * 330.00612 * 16 14 13 48 48 H 0.97008 * 119.99978 * 180.02562 * 20 19 17 49 49 H 1.07999 * 120.03326 * 179.97438 * 25 13 12 50 50 H 1.08001 * 119.96387 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5053 -0.8120 1.1984 6 6 4.1244 0.4817 1.5157 7 6 3.9989 -1.8659 2.0949 8 7 2.0197 -0.6925 -1.1993 9 6 2.0825 0.2225 -2.3469 10 6 2.5885 -0.5217 -3.5556 11 6 3.9452 -0.5677 -3.8194 12 6 4.4128 -1.2535 -4.9232 13 6 3.5177 -1.8880 -5.7751 14 7 3.9868 -2.5781 -6.8952 15 6 3.0413 -3.2471 -7.7923 16 6 5.4242 -2.6330 -7.1729 17 6 6.0214 -3.8382 -6.4934 18 1 5.3931 -4.4976 -5.9131 19 6 7.3698 -4.0997 -6.6134 20 7 7.8911 -5.1512 -6.0200 21 14 8.4565 -2.9596 -7.6178 22 1 8.9951 -1.8893 -6.7405 23 1 9.5811 -3.7343 -8.2010 24 1 7.6571 -2.3489 -8.7101 25 6 2.1550 -1.8350 -5.5103 26 6 1.6947 -1.1518 -4.4020 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7412 -0.1646 2.1376 31 1 1.6149 -1.7241 1.2888 32 1 3.8280 0.7902 2.5183 33 1 5.2092 0.3864 1.4704 34 1 3.7952 1.2290 0.7936 35 1 3.6493 -2.8362 1.7421 36 1 5.0888 -1.8539 2.1044 37 1 3.6248 -1.6896 3.1034 38 1 1.4495 -1.4980 -1.4099 39 1 1.0871 0.6162 -2.5525 40 1 2.7588 1.0461 -2.1183 41 1 4.6403 -0.0700 -3.1593 42 1 5.4729 -1.2928 -5.1261 43 1 2.7312 -2.5549 -8.5752 44 1 3.5213 -4.1152 -8.2441 45 1 2.1679 -3.5691 -7.2252 46 1 5.5838 -2.7060 -8.2486 47 1 5.9020 -1.7290 -6.7952 48 1 8.8399 -5.3350 -6.1041 49 1 1.4565 -2.3269 -6.1710 50 1 0.6353 -1.1098 -4.1958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290197064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:11 Heat of formation + Delta-G solvation = 44.478204 kcal Electronic energy + Delta-G solvation = -25090.524138 eV Core-core repulsion = 21731.885124 eV Total energy + Delta-G solvation = -3358.639014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.10939 -38.23368 -36.34518 -35.16943 -32.63892 -31.55583 -30.46890 -28.84241 -28.19022 -27.61159 -27.03898 -25.56654 -23.79551 -22.43220 -21.87596 -21.37776 -20.48449 -19.48097 -16.89790 -16.71011 -15.93889 -15.71283 -15.29631 -15.11648 -14.67185 -14.53231 -14.24964 -14.08864 -13.72461 -13.49106 -13.04929 -13.01567 -12.88585 -12.84954 -12.49588 -12.39253 -12.22737 -11.98525 -11.79623 -11.70573 -11.64833 -11.54934 -11.40141 -11.30959 -10.94374 -10.82039 -10.56830 -10.55325 -10.20621 -10.00130 -9.53981 -8.84497 -8.61482 -8.24212 -8.22139 -8.06750 -6.35172 -6.10115 -4.09896 2.14575 2.25604 3.25128 3.32592 3.33363 3.89641 4.09991 4.27783 4.36179 4.68815 4.78951 4.96295 5.11458 5.18162 5.20239 5.22234 5.29482 5.34596 5.39148 5.43215 5.53617 5.58280 5.60599 5.64178 5.67348 5.80955 5.83424 5.87957 5.89547 5.92762 5.95777 6.00712 6.08876 6.27520 6.39305 6.44171 6.61513 6.79978 6.81104 7.00212 7.06039 7.07551 7.13082 7.26295 7.38567 7.57445 7.61553 7.63161 8.10028 8.39904 8.56152 8.97984 9.49797 11.02964 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.003329 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.442152 B = 8408.842214 C = 9720.792543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.073 0.927 4 C 0.068 3.932 5 N -0.522 5.522 6 C 0.028 3.972 7 C 0.027 3.973 8 N -0.657 5.657 9 C 0.118 3.882 10 C -0.165 4.165 11 C -0.047 4.047 12 C -0.188 4.188 13 C 0.240 3.760 14 N -0.612 5.612 15 C 0.099 3.901 16 C 0.221 3.779 17 C -0.534 4.534 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.872 3.128 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.266 1.266 25 C -0.219 4.219 26 C -0.069 4.069 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.016 0.984 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.338 0.662 39 H 0.022 0.978 40 H 0.068 0.932 41 H 0.113 0.887 42 H 0.127 0.873 43 H 0.035 0.965 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.265 0.735 49 H 0.112 0.888 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 11.642 11.460 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 H 0.091 0.909 4 C -0.061 4.061 5 N -0.245 5.245 6 C -0.121 4.121 7 C -0.122 4.122 8 N -0.287 5.287 9 C -0.010 4.010 10 C -0.168 4.168 11 C -0.066 4.066 12 C -0.211 4.211 13 C 0.134 3.866 14 N -0.319 5.319 15 C -0.045 4.045 16 C 0.100 3.900 17 C -0.572 4.572 18 H 0.095 0.905 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.699 3.301 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.242 4.242 26 C -0.089 4.089 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.156 0.844 39 H 0.040 0.960 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.145 0.855 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.074 0.926 49 H 0.130 0.870 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.711 11.373 10.970 20.279 hybrid contribution -0.435 0.589 0.159 0.749 sum -13.146 11.961 11.130 20.971 Atomic orbital electron populations 1.22515 0.97592 1.02193 1.02020 1.21544 0.91454 0.97923 0.91415 0.90866 1.22138 0.88054 1.00424 0.95485 1.61758 1.05507 1.05239 1.51974 1.22385 1.00008 0.91520 0.98146 1.22386 1.00763 0.95695 0.93313 1.60484 1.57010 1.08872 1.02373 1.20648 0.97908 0.94162 0.88287 1.19204 0.93649 1.06028 0.97888 1.20640 0.94378 0.96494 0.95114 1.20834 0.99815 1.03374 0.97053 1.17908 0.92168 0.89652 0.86881 1.46695 1.07032 1.53972 1.24153 1.21478 0.93173 0.96804 0.93013 1.19645 0.76681 0.97481 0.96215 1.21487 0.94087 1.09474 1.32168 0.90549 1.24897 0.97769 0.95100 0.95248 1.69909 1.12919 1.27047 1.43416 0.86917 0.80812 0.81289 0.81121 1.19873 1.21003 1.19053 1.20496 0.93678 1.08333 1.01683 1.20504 0.97825 0.96482 0.94061 0.92429 0.92460 0.92329 0.95061 0.91125 0.96596 0.91557 0.91546 0.91290 0.91511 0.96548 0.84351 0.95956 0.91367 0.86919 0.85526 0.94645 0.91334 0.92444 0.95539 0.95502 0.92551 0.86962 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.16 37.16 0.34 -1.13 16 2 C 0.09 0.85 2.60 -67.71 -0.18 0.68 16 3 H 0.07 0.73 6.75 -51.93 -0.35 0.38 16 4 C 0.07 0.67 4.68 -3.82 -0.02 0.65 16 5 N -0.52 -5.97 4.69 -251.25 -1.18 -7.15 16 6 C 0.03 0.28 9.39 60.06 0.56 0.84 16 7 C 0.03 0.28 9.52 60.07 0.57 0.85 16 8 N -0.66 -7.98 5.98 -107.99 -0.65 -8.63 16 9 C 0.12 1.49 5.61 -4.98 -0.03 1.46 16 10 C -0.16 -2.56 5.40 -104.59 -0.56 -3.13 16 11 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 12 C -0.19 -3.84 9.21 -39.38 -0.36 -4.21 16 13 C 0.24 4.87 6.55 -83.79 -0.55 4.32 16 14 N -0.61 -13.02 2.99 -180.99 -0.54 -13.56 16 15 C 0.10 1.73 10.19 59.85 0.61 2.34 16 16 C 0.22 5.28 3.98 -5.19 -0.02 5.26 16 17 C -0.53 -15.04 9.94 -34.44 -0.34 -15.38 16 18 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 21 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 25 C -0.22 -3.81 9.21 -39.38 -0.36 -4.18 16 26 C -0.07 -1.07 9.69 -39.61 -0.38 -1.46 16 27 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.03 0.28 7.96 -51.93 -0.41 -0.14 16 31 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 32 H 0.02 0.14 8.09 -51.93 -0.42 -0.28 16 33 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.07 0.66 6.97 -51.93 -0.36 0.30 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 37 H 0.02 0.15 8.13 -51.93 -0.42 -0.28 16 38 H 0.34 4.16 8.46 -39.29 -0.33 3.83 16 39 H 0.02 0.26 7.38 -51.93 -0.38 -0.13 16 40 H 0.07 0.86 7.99 -51.93 -0.42 0.44 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.13 2.79 6.14 -52.49 -0.32 2.46 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 45 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 46 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 47 H 0.03 0.64 5.63 -51.93 -0.29 0.35 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.11 1.76 6.14 -52.49 -0.32 1.44 16 50 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 393.71 15.07 5.93 5.93 Total: -1.00 -30.82 393.71 -10.44 -41.25 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.91 Total: 4.71 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.20 Total: -12.32 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -1.59 Total: -55.85 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.82 -10.44 -41.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290197064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.732 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds