Wall clock time and date at job start Tue Mar 31 2020 08:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 120.00423 * 2 1 4 4 N 1.46903 * 109.47020 * 123.36071 * 3 2 1 5 5 C 1.46901 * 110.99691 * 164.26552 * 4 3 2 6 6 C 1.50701 * 109.47256 * 293.95417 * 5 4 3 7 7 H 1.07998 * 119.99582 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00105 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00013 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47163 * 90.00292 * 10 8 6 12 12 H 1.48506 * 109.47354 * 210.00310 * 10 8 6 13 13 H 1.48499 * 109.47268 * 330.00604 * 10 8 6 14 14 C 1.46900 * 111.00293 * 288.21699 * 4 3 2 15 15 C 1.50701 * 109.47553 * 164.04275 * 14 4 3 16 16 C 1.39874 * 126.03903 * 277.56324 * 15 14 4 17 17 C 1.50699 * 125.89692 * 359.97438 * 16 15 14 18 18 N 1.30837 * 108.19738 * 179.81243 * 16 15 14 19 19 N 1.40082 * 108.20782 * 0.43499 * 18 16 15 20 20 C 1.46503 * 126.03652 * 179.73870 * 19 18 16 21 21 C 1.52997 * 109.47222 * 232.00347 * 20 19 18 22 22 C 1.52999 * 109.47032 * 352.00475 * 20 19 18 23 23 C 1.52995 * 109.47044 * 112.00244 * 20 19 18 24 24 C 1.34946 * 107.92491 * 359.71960 * 19 18 16 25 25 C 1.50697 * 126.12542 * 180.02562 * 24 19 18 26 26 H 1.08004 * 120.00154 * 185.12279 * 1 2 3 27 27 H 1.08002 * 119.99713 * 5.11755 * 1 2 3 28 28 H 1.08007 * 120.00179 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47053 * 3.36717 * 3 2 1 30 30 H 1.08995 * 109.47573 * 243.36075 * 3 2 1 31 31 H 1.08991 * 109.47548 * 53.95649 * 5 4 3 32 32 H 1.09005 * 109.46817 * 173.95374 * 5 4 3 33 33 H 0.96997 * 119.99875 * 179.97438 * 9 8 6 34 34 H 1.08995 * 109.47581 * 284.04485 * 14 4 3 35 35 H 1.09004 * 109.46843 * 44.04280 * 14 4 3 36 36 H 1.09000 * 109.47366 * 94.37982 * 17 16 15 37 37 H 1.09001 * 109.47142 * 214.37827 * 17 16 15 38 38 H 1.09004 * 109.47361 * 334.37658 * 17 16 15 39 39 H 1.09008 * 109.47012 * 59.99881 * 21 20 19 40 40 H 1.08999 * 109.47023 * 179.97438 * 21 20 19 41 41 H 1.09000 * 109.46961 * 300.00310 * 21 20 19 42 42 H 1.09000 * 109.47510 * 59.99892 * 22 20 19 43 43 H 1.08999 * 109.47502 * 180.02562 * 22 20 19 44 44 H 1.09007 * 109.47430 * 299.99659 * 22 20 19 45 45 H 1.09001 * 109.47358 * 64.77524 * 23 20 19 46 46 H 1.09004 * 109.47370 * 184.77361 * 23 20 19 47 47 H 1.09002 * 109.47490 * 304.77542 * 23 20 19 48 48 H 1.09001 * 109.47316 * 273.01163 * 25 24 19 49 49 H 1.09002 * 109.47363 * 33.00925 * 25 24 19 50 50 H 1.09000 * 109.47107 * 153.00987 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9680 1.3482 1.1568 5 6 3.9739 2.4072 0.9993 6 6 4.8829 2.0690 -0.1541 7 1 4.7290 1.1583 -0.7138 8 6 5.9116 2.9216 -0.4941 9 7 6.7052 2.6262 -1.5004 10 14 6.1782 4.4965 0.4745 11 1 7.1034 4.2314 1.6054 12 1 6.7662 5.5308 -0.4142 13 1 4.8769 4.9792 1.0024 14 6 2.2158 1.5184 2.4071 15 6 3.1003 1.1709 3.5768 16 6 3.3546 -0.1159 4.0624 17 6 2.7904 -1.3978 3.5062 18 7 4.1697 -0.0145 5.0808 19 7 4.4523 1.3427 5.2819 20 6 5.3204 1.8971 6.3238 21 6 4.5691 2.9917 7.0843 22 6 5.7244 0.7864 7.2954 23 6 6.5741 2.4922 5.6797 24 6 3.7842 2.0491 4.3462 25 6 3.7978 3.5475 4.1865 26 1 -0.5400 -0.9316 0.0835 27 1 -0.5400 0.9316 -0.0834 28 1 1.8500 -0.9354 -0.0004 29 1 1.3568 2.1327 0.0604 30 1 2.6443 1.3894 -0.9185 31 1 3.4749 3.3560 0.8025 32 1 4.5618 2.4886 1.9136 33 1 7.4287 3.2263 -1.7398 34 1 1.8870 2.5539 2.4953 35 1 1.3467 0.8606 2.4007 36 1 3.4963 -1.8272 2.7953 37 1 2.6198 -2.1028 4.3198 38 1 1.8468 -1.1905 3.0012 39 1 3.6759 2.5677 7.5432 40 1 5.2148 3.4039 7.8597 41 1 4.2813 3.7829 6.3920 42 1 6.2596 0.0066 6.7536 43 1 6.3698 1.1990 8.0708 44 1 4.8312 0.3624 7.7543 45 1 6.2936 3.3385 5.0526 46 1 7.2583 2.8283 6.4588 47 1 7.0636 1.7338 5.0687 48 1 3.0290 3.9876 4.8217 49 1 4.7744 3.9350 4.4766 50 1 3.5997 3.8038 3.1457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292770099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:21 Heat of formation + Delta-G solvation = 94.935231 kcal Electronic energy + Delta-G solvation = -26949.885088 eV Core-core repulsion = 23593.434054 eV Total energy + Delta-G solvation = -3356.451033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20386 -37.43373 -36.57255 -33.34335 -32.58591 -32.26273 -31.04671 -28.68739 -27.57020 -27.51523 -27.04050 -26.84508 -25.26420 -23.28350 -20.94081 -20.42449 -19.23634 -18.77788 -18.53589 -16.88911 -16.11619 -15.42792 -14.91449 -14.66925 -14.55863 -14.16064 -14.10490 -13.73730 -13.45709 -13.21311 -13.19270 -13.01234 -12.59926 -12.49238 -12.36821 -12.27930 -12.20012 -12.01504 -11.96279 -11.87606 -11.76063 -11.56330 -11.19059 -11.10872 -11.02093 -10.79954 -10.74052 -10.47485 -10.14115 -9.98731 -9.82879 -9.31668 -8.86933 -8.58910 -8.52991 -7.82658 -7.25197 -6.03023 -3.98571 2.25142 2.68623 2.72990 3.21107 3.25188 3.32057 3.33222 4.41843 4.43154 4.68748 4.78666 4.91589 5.05184 5.15467 5.18823 5.30286 5.35411 5.39806 5.49205 5.53843 5.59330 5.61094 5.61721 5.65258 5.66711 5.69512 5.75721 5.82982 5.94104 6.01801 6.07428 6.07607 6.12800 6.21149 6.23019 6.31897 6.43843 6.52850 6.59291 6.64945 6.90636 6.97518 7.05661 7.18808 7.22096 7.47300 7.68202 7.99824 8.16105 8.21985 8.71204 9.06944 9.59534 11.10430 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.006629 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.446057 B = 4222.563621 C = 6082.931407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.115 4.115 3 C 0.080 3.920 4 N -0.516 5.516 5 C 0.163 3.837 6 C -0.504 4.504 7 H 0.081 0.919 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.868 3.132 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.266 1.266 14 C 0.131 3.869 15 C -0.209 4.209 16 C 0.093 3.907 17 C -0.063 4.063 18 N -0.304 5.304 19 N -0.364 5.364 20 C 0.185 3.815 21 C -0.166 4.166 22 C -0.138 4.138 23 C -0.166 4.166 24 C 0.091 3.909 25 C -0.103 4.103 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.110 0.890 29 H 0.023 0.977 30 H 0.099 0.901 31 H -0.017 1.017 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 -0.320 15.637 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.134 4.134 3 C -0.047 4.047 4 N -0.239 5.239 5 C 0.037 3.963 6 C -0.542 4.542 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.695 3.305 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.191 1.191 14 C 0.002 3.998 15 C -0.221 4.221 16 C -0.073 4.073 17 C -0.122 4.122 18 N -0.126 5.126 19 N -0.148 5.148 20 C 0.102 3.898 21 C -0.224 4.224 22 C -0.196 4.196 23 C -0.224 4.224 24 C -0.036 4.036 25 C -0.161 4.161 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.042 0.958 30 H 0.117 0.883 31 H 0.001 0.999 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.441 -1.263 16.569 17.822 hybrid contribution -0.377 2.151 -0.273 2.200 sum -6.818 0.888 16.296 17.687 Atomic orbital electron populations 1.23687 0.95990 1.01080 1.05271 1.23125 0.95193 0.99548 0.95533 1.21192 0.94284 0.92603 0.96637 1.61846 1.13598 1.49209 0.99280 1.20206 0.90652 0.87622 0.97824 1.21077 1.11754 1.08158 1.13211 0.90104 1.24874 0.95778 0.97641 0.94997 1.69893 1.18410 1.37548 1.28218 0.86969 0.78748 0.84251 0.80495 1.20292 1.21279 1.19127 1.20271 0.93850 0.97972 0.87696 1.19524 1.08871 0.91676 1.01983 1.22036 0.95796 0.95822 0.93640 1.20069 1.00823 0.91413 0.99906 1.77160 1.20246 0.94257 1.20916 1.48487 1.37455 1.03977 1.24856 1.20551 0.89083 0.93971 0.86229 1.22392 1.00976 0.98340 1.00736 1.21844 1.02122 0.97709 0.97905 1.22358 0.96410 1.02070 1.01589 1.20600 0.96130 0.94832 0.92051 1.20767 1.02427 0.88648 1.04239 0.89113 0.89303 0.87223 0.95850 0.88298 0.99931 0.95173 0.92803 0.95712 0.91077 0.90400 0.92053 0.90768 0.91806 0.90576 0.91025 0.91141 0.91450 0.91742 0.91525 0.90694 0.91271 0.90749 0.91023 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.98 14.31 29.02 0.42 -2.57 16 2 C -0.12 -1.82 8.76 -36.02 -0.32 -2.14 16 3 C 0.08 1.52 5.26 -4.97 -0.03 1.49 16 4 N -0.52 -10.65 4.39 -238.96 -1.05 -11.70 16 5 C 0.16 3.91 2.75 -4.97 -0.01 3.89 16 6 C -0.50 -14.22 8.84 -34.44 -0.30 -14.53 16 7 H 0.08 2.49 7.50 -52.49 -0.39 2.10 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 10 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.13 2.33 4.74 -4.98 -0.02 2.31 16 15 C -0.21 -3.80 4.99 -105.05 -0.52 -4.32 16 16 C 0.09 1.66 7.22 -82.40 -0.59 1.06 16 17 C -0.06 -0.93 10.29 36.01 0.37 -0.56 16 18 N -0.30 -5.46 11.64 33.67 0.39 -5.07 16 19 N -0.36 -5.97 3.45 -44.54 -0.15 -6.12 16 20 C 0.18 2.36 1.06 -131.82 -0.14 2.22 16 21 C -0.17 -1.69 8.35 37.16 0.31 -1.38 16 22 C -0.14 -1.57 8.02 37.16 0.30 -1.28 16 23 C -0.17 -2.11 8.54 37.16 0.32 -1.80 16 24 C 0.09 1.56 5.77 -82.27 -0.47 1.09 16 25 C -0.10 -1.53 7.63 36.00 0.27 -1.25 16 26 H 0.09 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.09 1.15 7.85 -52.49 -0.41 0.74 16 28 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.02 0.42 7.71 -51.93 -0.40 0.02 16 30 H 0.10 2.13 6.59 -51.93 -0.34 1.79 16 31 H -0.02 -0.41 7.18 -51.93 -0.37 -0.78 16 32 H 0.03 0.74 4.90 -51.93 -0.25 0.49 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.02 0.43 7.25 -51.93 -0.38 0.06 16 35 H 0.07 1.16 6.47 -51.93 -0.34 0.82 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.00 7.31 -51.93 -0.38 0.62 16 39 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.73 4.97 -51.93 -0.26 0.47 16 42 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 45 H 0.07 0.89 5.72 -51.93 -0.30 0.59 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.07 0.89 7.63 -51.93 -0.40 0.50 16 49 H 0.07 0.99 4.90 -51.93 -0.25 0.74 16 50 H 0.09 1.47 5.77 -51.93 -0.30 1.17 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -32.00 383.08 -8.05 -40.05 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.59 Total: 3.21 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -0.53 Total: -15.89 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.04 Total: -49.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.00 -8.05 -40.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292770099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.982 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds